File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/773d42770feac8d4bd23cf6ff027f1/.command.log
Size
747 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/57794e08d71a1294256ef3d8b792f7/1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/773d42770feac8d4bd23cf6ff027f1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/773d42770feac8d4bd23cf6ff027f1/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1: vaf_p90=0.999742 -> CONTAMINATED (~0.0%)

Output saved to: 1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.predictions.csv
Summary: 1/1 samples flagged as contaminated