File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/c985401a75412598ac22a0734b85b1/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/c985401a75412598ac22a0734b85b1/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/13/2a6e380dd8d598b7fede8bbc584d5b/1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/d03c0c49131fe43942b54e5d01c495/1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/c985401a75412598ac22a0734b85b1/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5
Successfully converted 1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5 to 1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1_kallisto_mqc.tsv
  Sample: 1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1
  Mean Fragment Length: 104.1 bp
  Median Fragment Length: 98.0 bp
  pct_mito_est_counts: 0.011%
  pct_ribo_est_counts: 0.727%
  pct_hk_est_counts: 0.481%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.021%
  pct_ribo_tpm: 2.118%
  pct_hk_tpm: 0.709%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.491%