File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/77004480fbeeb34d9edaaec51329e9/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 15:48:02
                             Started mapping on |	Jun 08 15:54:38
                                    Finished on |	Jun 08 16:53:16
       Mapping speed, Million of reads per hour |	301.52

                          Number of input reads |	294656435
                      Average input read length |	244
                                    UNIQUE READS:
                   Uniquely mapped reads number |	265949553
                        Uniquely mapped reads % |	90.26%
                          Average mapped length |	243.23
                       Number of splices: Total |	296174417
            Number of splices: Annotated (sjdb) |	292685027
                       Number of splices: GT/AG |	293170534
                       Number of splices: GC/AG |	1863032
                       Number of splices: AT/AC |	220514
               Number of splices: Non-canonical |	920337
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.94
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.61
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	24177752
             % of reads mapped to multiple loci |	8.21%
        Number of reads mapped to too many loci |	166582
             % of reads mapped to too many loci |	0.06%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	4032642
                 % of reads unmapped: too short |	1.37%
                Number of reads unmapped: other |	329906
                     % of reads unmapped: other |	0.11%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%