Using GATK jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar
Running:
java -Dsamjdk.use_async_io_read_samtools=false -Dsamjdk.use_async_io_write_samtools=true -Dsamjdk.use_async_io_write_tribble=false -Dsamjdk.compression_level=2 -Xmx60620M -XX:-UsePerfData -XX:ParallelGCThreads=2 -jar /usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar MarkDuplicates --INPUT 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --TMP_DIR . --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa -REMOVE_DUPLICATES false -VALIDATION_STRINGENCY LENIENT
08:17:20.425 INFO NativeLibraryLoader - Loading libgkl_compression.so from jar:file:/usr/local/share/gatk4-4.4.0.0-0/gatk-package-4.4.0.0-local.jar!/com/intel/gkl/native/libgkl_compression.so
[Mon Jun 08 08:17:20 GMT 2026] MarkDuplicates --INPUT 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam --OUTPUT 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.md.bam --METRICS_FILE 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics --REMOVE_DUPLICATES false --TMP_DIR . --VALIDATION_STRINGENCY LENIENT --CREATE_INDEX true --REFERENCE_SEQUENCE ref_genome.fa --MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP 50000 --MAX_FILE_HANDLES_FOR_READ_ENDS_MAP 8000 --SORTING_COLLECTION_SIZE_RATIO 0.25 --TAG_DUPLICATE_SET_MEMBERS false --REMOVE_SEQUENCING_DUPLICATES false --TAGGING_POLICY DontTag --CLEAR_DT true --DUPLEX_UMI false --FLOW_MODE false --FLOW_QUALITY_SUM_STRATEGY false --USE_END_IN_UNPAIRED_READS false --USE_UNPAIRED_CLIPPED_END false --UNPAIRED_END_UNCERTAINTY 0 --FLOW_SKIP_FIRST_N_FLOWS 0 --FLOW_Q_IS_KNOWN_END false --FLOW_EFFECTIVE_QUALITY_THRESHOLD 15 --ADD_PG_TAG_TO_READS true --ASSUME_SORTED false --DUPLICATE_SCORING_STRATEGY SUM_OF_BASE_QUALITIES --PROGRAM_RECORD_ID MarkDuplicates --PROGRAM_GROUP_NAME MarkDuplicates --READ_NAME_REGEX <optimized capture of last three ':' separated fields as numeric values> --OPTICAL_DUPLICATE_PIXEL_DISTANCE 100 --MAX_OPTICAL_DUPLICATE_SET_SIZE 300000 --VERBOSITY INFO --QUIET false --COMPRESSION_LEVEL 2 --MAX_RECORDS_IN_RAM 500000 --CREATE_MD5_FILE false --help false --version false --showHidden false --USE_JDK_DEFLATER false --USE_JDK_INFLATER false
[Mon Jun 08 08:17:20 GMT 2026] Executing as ?@nf-2dcabdee700ca1fbe3b8bd8d67670382-29e3d-l8lrr on Linux 6.12.88 amd64; OpenJDK 64-Bit Server VM 17.0.3-internal+0-adhoc..src; Deflater: Intel; Inflater: Intel; Provider GCS is available; Picard version: Version:4.4.0.0
INFO 2026-06-08 08:17:20 MarkDuplicates Start of doWork freeMemory: 105828920; totalMemory: 134217728; maxMemory: 63585648640
INFO 2026-06-08 08:17:20 MarkDuplicates Reading input file and constructing read end information.
INFO 2026-06-08 08:17:20 MarkDuplicates Will retain up to 230382784 data points before spilling to disk.
INFO 2026-06-08 08:17:24 MarkDuplicates Read 1,000,000 records. Elapsed time: 00:00:02s. Time for last 1,000,000: 2s. Last read position: chr1:1,517,352
INFO 2026-06-08 08:17:24 MarkDuplicates Tracking 3500 as yet unmatched pairs. 150 records in RAM.
INFO 2026-06-08 08:17:26 MarkDuplicates Read 2,000,000 records. Elapsed time: 00:00:04s. Time for last 1,000,000: 1s. Last read position: chr1:6,197,692
INFO 2026-06-08 08:17:26 MarkDuplicates Tracking 6737 as yet unmatched pairs. 19 records in RAM.
INFO 2026-06-08 08:17:28 MarkDuplicates Read 3,000,000 records. Elapsed time: 00:00:06s. Time for last 1,000,000: 2s. Last read position: chr1:9,356,537
INFO 2026-06-08 08:17:28 MarkDuplicates Tracking 10336 as yet unmatched pairs. 174 records in RAM.
INFO 2026-06-08 08:17:30 MarkDuplicates Read 4,000,000 records. Elapsed time: 00:00:08s. Time for last 1,000,000: 2s. Last read position: chr1:12,386,185
INFO 2026-06-08 08:17:30 MarkDuplicates Tracking 13351 as yet unmatched pairs. 35 records in RAM.
INFO 2026-06-08 08:17:31 MarkDuplicates Read 5,000,000 records. Elapsed time: 00:00:09s. Time for last 1,000,000: 1s. Last read position: chr1:16,992,052
INFO 2026-06-08 08:17:31 MarkDuplicates Tracking 16302 as yet unmatched pairs. 115 records in RAM.
INFO 2026-06-08 08:17:33 MarkDuplicates Read 6,000,000 records. Elapsed time: 00:00:11s. Time for last 1,000,000: 1s. Last read position: chr1:20,851,269
INFO 2026-06-08 08:17:33 MarkDuplicates Tracking 19445 as yet unmatched pairs. 65 records in RAM.
INFO 2026-06-08 08:17:35 MarkDuplicates Read 7,000,000 records. Elapsed time: 00:00:13s. Time for last 1,000,000: 1s. Last read position: chr1:22,490,050
INFO 2026-06-08 08:17:35 MarkDuplicates Tracking 22625 as yet unmatched pairs. 53 records in RAM.
INFO 2026-06-08 08:17:37 MarkDuplicates Read 8,000,000 records. Elapsed time: 00:00:15s. Time for last 1,000,000: 1s. Last read position: chr1:24,669,123
INFO 2026-06-08 08:17:37 MarkDuplicates Tracking 25682 as yet unmatched pairs. 138 records in RAM.
INFO 2026-06-08 08:17:38 MarkDuplicates Read 9,000,000 records. Elapsed time: 00:00:16s. Time for last 1,000,000: 1s. Last read position: chr1:27,335,381
INFO 2026-06-08 08:17:38 MarkDuplicates Tracking 28699 as yet unmatched pairs. 153 records in RAM.
INFO 2026-06-08 08:17:40 MarkDuplicates Read 10,000,000 records. Elapsed time: 00:00:18s. Time for last 1,000,000: 1s. Last read position: chr1:31,665,196
INFO 2026-06-08 08:17:40 MarkDuplicates Tracking 31822 as yet unmatched pairs. 169 records in RAM.
INFO 2026-06-08 08:17:41 MarkDuplicates Read 11,000,000 records. Elapsed time: 00:00:20s. Time for last 1,000,000: 1s. Last read position: chr1:35,189,357
INFO 2026-06-08 08:17:41 MarkDuplicates Tracking 35219 as yet unmatched pairs. 410 records in RAM.
INFO 2026-06-08 08:17:43 MarkDuplicates Read 12,000,000 records. Elapsed time: 00:00:21s. Time for last 1,000,000: 1s. Last read position: chr1:39,334,649
INFO 2026-06-08 08:17:43 MarkDuplicates Tracking 37995 as yet unmatched pairs. 90 records in RAM.
INFO 2026-06-08 08:17:45 MarkDuplicates Read 13,000,000 records. Elapsed time: 00:00:23s. Time for last 1,000,000: 1s. Last read position: chr1:42,958,686
INFO 2026-06-08 08:17:45 MarkDuplicates Tracking 41507 as yet unmatched pairs. 530 records in RAM.
INFO 2026-06-08 08:17:47 MarkDuplicates Read 14,000,000 records. Elapsed time: 00:00:25s. Time for last 1,000,000: 1s. Last read position: chr1:45,345,976
INFO 2026-06-08 08:17:47 MarkDuplicates Tracking 44317 as yet unmatched pairs. 41 records in RAM.
INFO 2026-06-08 08:17:49 MarkDuplicates Read 15,000,000 records. Elapsed time: 00:00:28s. Time for last 1,000,000: 2s. Last read position: chr1:53,050,621
INFO 2026-06-08 08:17:49 MarkDuplicates Tracking 47500 as yet unmatched pairs. 204 records in RAM.
INFO 2026-06-08 08:17:51 MarkDuplicates Read 16,000,000 records. Elapsed time: 00:00:30s. Time for last 1,000,000: 2s. Last read position: chr1:68,126,211
INFO 2026-06-08 08:17:51 MarkDuplicates Tracking 50295 as yet unmatched pairs. 52 records in RAM.
INFO 2026-06-08 08:17:53 MarkDuplicates Read 17,000,000 records. Elapsed time: 00:00:31s. Time for last 1,000,000: 1s. Last read position: chr1:94,926,977
INFO 2026-06-08 08:17:53 MarkDuplicates Tracking 53139 as yet unmatched pairs. 42 records in RAM.
INFO 2026-06-08 08:17:55 MarkDuplicates Read 18,000,000 records. Elapsed time: 00:00:33s. Time for last 1,000,000: 1s. Last read position: chr1:110,341,453
INFO 2026-06-08 08:17:55 MarkDuplicates Tracking 56145 as yet unmatched pairs. 204 records in RAM.
INFO 2026-06-08 08:17:56 MarkDuplicates Read 19,000,000 records. Elapsed time: 00:00:34s. Time for last 1,000,000: 1s. Last read position: chr1:116,389,687
INFO 2026-06-08 08:17:56 MarkDuplicates Tracking 58996 as yet unmatched pairs. 150 records in RAM.
INFO 2026-06-08 08:17:58 MarkDuplicates Read 20,000,000 records. Elapsed time: 00:00:36s. Time for last 1,000,000: 1s. Last read position: chr1:145,233,211
INFO 2026-06-08 08:17:58 MarkDuplicates Tracking 61245 as yet unmatched pairs. 47 records in RAM.
INFO 2026-06-08 08:17:59 MarkDuplicates Read 21,000,000 records. Elapsed time: 00:00:38s. Time for last 1,000,000: 1s. Last read position: chr1:148,679,471
INFO 2026-06-08 08:17:59 MarkDuplicates Tracking 62666 as yet unmatched pairs. 77 records in RAM.
INFO 2026-06-08 08:18:01 MarkDuplicates Read 22,000,000 records. Elapsed time: 00:00:39s. Time for last 1,000,000: 1s. Last read position: chr1:150,558,982
INFO 2026-06-08 08:18:01 MarkDuplicates Tracking 64911 as yet unmatched pairs. 132 records in RAM.
INFO 2026-06-08 08:18:02 MarkDuplicates Read 23,000,000 records. Elapsed time: 00:00:40s. Time for last 1,000,000: 1s. Last read position: chr1:151,612,386
INFO 2026-06-08 08:18:02 MarkDuplicates Tracking 67973 as yet unmatched pairs. 149 records in RAM.
INFO 2026-06-08 08:18:04 MarkDuplicates Read 24,000,000 records. Elapsed time: 00:00:42s. Time for last 1,000,000: 1s. Last read position: chr1:154,225,151
INFO 2026-06-08 08:18:04 MarkDuplicates Tracking 70541 as yet unmatched pairs. 97 records in RAM.
INFO 2026-06-08 08:18:06 MarkDuplicates Read 25,000,000 records. Elapsed time: 00:00:44s. Time for last 1,000,000: 1s. Last read position: chr1:155,326,684
INFO 2026-06-08 08:18:06 MarkDuplicates Tracking 73612 as yet unmatched pairs. 137 records in RAM.
INFO 2026-06-08 08:18:07 MarkDuplicates Read 26,000,000 records. Elapsed time: 00:00:45s. Time for last 1,000,000: 1s. Last read position: chr1:156,138,504
INFO 2026-06-08 08:18:07 MarkDuplicates Tracking 78065 as yet unmatched pairs. 1328 records in RAM.
INFO 2026-06-08 08:18:09 MarkDuplicates Read 27,000,000 records. Elapsed time: 00:00:47s. Time for last 1,000,000: 1s. Last read position: chr1:160,306,475
INFO 2026-06-08 08:18:09 MarkDuplicates Tracking 79963 as yet unmatched pairs. 139 records in RAM.
INFO 2026-06-08 08:18:11 MarkDuplicates Read 28,000,000 records. Elapsed time: 00:00:49s. Time for last 1,000,000: 2s. Last read position: chr1:169,540,605
INFO 2026-06-08 08:18:11 MarkDuplicates Tracking 82676 as yet unmatched pairs. 22 records in RAM.
INFO 2026-06-08 08:18:13 MarkDuplicates Read 29,000,000 records. Elapsed time: 00:00:51s. Time for last 1,000,000: 2s. Last read position: chr1:183,122,127
INFO 2026-06-08 08:18:13 MarkDuplicates Tracking 85750 as yet unmatched pairs. 200 records in RAM.
INFO 2026-06-08 08:18:15 MarkDuplicates Read 30,000,000 records. Elapsed time: 00:00:54s. Time for last 1,000,000: 2s. Last read position: chr1:201,387,054
INFO 2026-06-08 08:18:15 MarkDuplicates Tracking 88737 as yet unmatched pairs. 417 records in RAM.
INFO 2026-06-08 08:18:17 MarkDuplicates Read 31,000,000 records. Elapsed time: 00:00:55s. Time for last 1,000,000: 1s. Last read position: chr1:204,410,332
INFO 2026-06-08 08:18:17 MarkDuplicates Tracking 91218 as yet unmatched pairs. 40 records in RAM.
INFO 2026-06-08 08:18:19 MarkDuplicates Read 32,000,000 records. Elapsed time: 00:00:57s. Time for last 1,000,000: 1s. Last read position: chr1:207,899,068
INFO 2026-06-08 08:18:19 MarkDuplicates Tracking 93992 as yet unmatched pairs. 41 records in RAM.
INFO 2026-06-08 08:18:20 MarkDuplicates Read 33,000,000 records. Elapsed time: 00:00:58s. Time for last 1,000,000: 1s. Last read position: chr1:225,411,353
INFO 2026-06-08 08:18:20 MarkDuplicates Tracking 96985 as yet unmatched pairs. 103 records in RAM.
INFO 2026-06-08 08:18:22 MarkDuplicates Read 34,000,000 records. Elapsed time: 00:01:00s. Time for last 1,000,000: 1s. Last read position: chr1:228,487,620
INFO 2026-06-08 08:18:22 MarkDuplicates Tracking 100063 as yet unmatched pairs. 37 records in RAM.
INFO 2026-06-08 08:18:23 MarkDuplicates Read 35,000,000 records. Elapsed time: 00:01:02s. Time for last 1,000,000: 1s. Last read position: chr1:243,378,777
INFO 2026-06-08 08:18:23 MarkDuplicates Tracking 103473 as yet unmatched pairs. 18 records in RAM.
INFO 2026-06-08 08:18:26 MarkDuplicates Read 36,000,000 records. Elapsed time: 00:01:04s. Time for last 1,000,000: 2s. Last read position: chr2:9,587,430
INFO 2026-06-08 08:18:26 MarkDuplicates Tracking 106680 as yet unmatched pairs. 105429 records in RAM.
INFO 2026-06-08 08:18:27 MarkDuplicates Read 37,000,000 records. Elapsed time: 00:01:05s. Time for last 1,000,000: 1s. Last read position: chr2:23,757,815
INFO 2026-06-08 08:18:27 MarkDuplicates Tracking 109741 as yet unmatched pairs. 108454 records in RAM.
INFO 2026-06-08 08:18:29 MarkDuplicates Read 38,000,000 records. Elapsed time: 00:01:07s. Time for last 1,000,000: 1s. Last read position: chr2:27,375,004
INFO 2026-06-08 08:18:29 MarkDuplicates Tracking 112970 as yet unmatched pairs. 111664 records in RAM.
INFO 2026-06-08 08:18:31 MarkDuplicates Read 39,000,000 records. Elapsed time: 00:01:09s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,255
INFO 2026-06-08 08:18:31 MarkDuplicates Tracking 180606 as yet unmatched pairs. 110512 records in RAM.
INFO 2026-06-08 08:18:32 MarkDuplicates Read 40,000,000 records. Elapsed time: 00:01:10s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:18:32 MarkDuplicates Tracking 453256 as yet unmatched pairs. 97381 records in RAM.
INFO 2026-06-08 08:18:34 MarkDuplicates Read 41,000,000 records. Elapsed time: 00:01:12s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,275
INFO 2026-06-08 08:18:34 MarkDuplicates Tracking 1043027 as yet unmatched pairs. 68333 records in RAM.
INFO 2026-06-08 08:18:35 MarkDuplicates Read 42,000,000 records. Elapsed time: 00:01:13s. Time for last 1,000,000: 1s. Last read position: chr2:32,916,406
INFO 2026-06-08 08:18:35 MarkDuplicates Tracking 1133941 as yet unmatched pairs. 63802 records in RAM.
INFO 2026-06-08 08:18:37 MarkDuplicates Read 43,000,000 records. Elapsed time: 00:01:15s. Time for last 1,000,000: 1s. Last read position: chr2:33,315,182
INFO 2026-06-08 08:18:37 MarkDuplicates Tracking 1219760 as yet unmatched pairs. 59594 records in RAM.
INFO 2026-06-08 08:18:39 MarkDuplicates Read 44,000,000 records. Elapsed time: 00:01:17s. Time for last 1,000,000: 2s. Last read position: chr2:43,398,034
INFO 2026-06-08 08:18:39 MarkDuplicates Tracking 1216616 as yet unmatched pairs. 56417 records in RAM.
INFO 2026-06-08 08:18:41 MarkDuplicates Read 45,000,000 records. Elapsed time: 00:01:19s. Time for last 1,000,000: 1s. Last read position: chr2:54,655,093
INFO 2026-06-08 08:18:41 MarkDuplicates Tracking 1213539 as yet unmatched pairs. 53307 records in RAM.
INFO 2026-06-08 08:18:43 MarkDuplicates Read 46,000,000 records. Elapsed time: 00:01:21s. Time for last 1,000,000: 1s. Last read position: chr2:69,370,002
INFO 2026-06-08 08:18:43 MarkDuplicates Tracking 1210644 as yet unmatched pairs. 50386 records in RAM.
INFO 2026-06-08 08:18:44 MarkDuplicates Read 47,000,000 records. Elapsed time: 00:01:22s. Time for last 1,000,000: 1s. Last read position: chr2:74,371,128
INFO 2026-06-08 08:18:44 MarkDuplicates Tracking 1208052 as yet unmatched pairs. 47757 records in RAM.
INFO 2026-06-08 08:18:45 MarkDuplicates Read 48,000,000 records. Elapsed time: 00:01:24s. Time for last 1,000,000: 1s. Last read position: chr2:86,162,057
INFO 2026-06-08 08:18:45 MarkDuplicates Tracking 1204724 as yet unmatched pairs. 44394 records in RAM.
INFO 2026-06-08 08:18:47 MarkDuplicates Read 49,000,000 records. Elapsed time: 00:01:25s. Time for last 1,000,000: 1s. Last read position: chr2:97,511,239
INFO 2026-06-08 08:18:47 MarkDuplicates Tracking 1202257 as yet unmatched pairs. 41894 records in RAM.
INFO 2026-06-08 08:18:49 MarkDuplicates Read 50,000,000 records. Elapsed time: 00:01:27s. Time for last 1,000,000: 1s. Last read position: chr2:108,766,694
INFO 2026-06-08 08:18:49 MarkDuplicates Tracking 1199733 as yet unmatched pairs. 39321 records in RAM.
INFO 2026-06-08 08:18:50 MarkDuplicates Read 51,000,000 records. Elapsed time: 00:01:28s. Time for last 1,000,000: 1s. Last read position: chr2:119,367,429
INFO 2026-06-08 08:18:50 MarkDuplicates Tracking 1197720 as yet unmatched pairs. 37273 records in RAM.
INFO 2026-06-08 08:18:52 MarkDuplicates Read 52,000,000 records. Elapsed time: 00:01:30s. Time for last 1,000,000: 1s. Last read position: chr2:134,254,393
INFO 2026-06-08 08:18:52 MarkDuplicates Tracking 1194757 as yet unmatched pairs. 34276 records in RAM.
INFO 2026-06-08 08:18:54 MarkDuplicates Read 53,000,000 records. Elapsed time: 00:01:32s. Time for last 1,000,000: 1s. Last read position: chr2:169,735,896
INFO 2026-06-08 08:18:54 MarkDuplicates Tracking 1191976 as yet unmatched pairs. 31425 records in RAM.
INFO 2026-06-08 08:18:55 MarkDuplicates Read 54,000,000 records. Elapsed time: 00:01:33s. Time for last 1,000,000: 1s. Last read position: chr2:181,918,824
INFO 2026-06-08 08:18:55 MarkDuplicates Tracking 1189228 as yet unmatched pairs. 28647 records in RAM.
INFO 2026-06-08 08:18:57 MarkDuplicates Read 55,000,000 records. Elapsed time: 00:01:35s. Time for last 1,000,000: 1s. Last read position: chr2:189,006,378
INFO 2026-06-08 08:18:57 MarkDuplicates Tracking 1187680 as yet unmatched pairs. 27065 records in RAM.
INFO 2026-06-08 08:18:58 MarkDuplicates Read 56,000,000 records. Elapsed time: 00:01:36s. Time for last 1,000,000: 1s. Last read position: chr2:199,348,789
INFO 2026-06-08 08:18:58 MarkDuplicates Tracking 1183127 as yet unmatched pairs. 22468 records in RAM.
INFO 2026-06-08 08:19:00 MarkDuplicates Read 57,000,000 records. Elapsed time: 00:01:38s. Time for last 1,000,000: 1s. Last read position: chr2:215,326,870
INFO 2026-06-08 08:19:00 MarkDuplicates Tracking 1180201 as yet unmatched pairs. 19487 records in RAM.
INFO 2026-06-08 08:19:02 MarkDuplicates Read 58,000,000 records. Elapsed time: 00:01:40s. Time for last 1,000,000: 1s. Last read position: chr2:215,424,202
INFO 2026-06-08 08:19:02 MarkDuplicates Tracking 1178169 as yet unmatched pairs. 17429 records in RAM.
INFO 2026-06-08 08:19:03 MarkDuplicates Read 59,000,000 records. Elapsed time: 00:01:41s. Time for last 1,000,000: 1s. Last read position: chr2:218,427,975
INFO 2026-06-08 08:19:03 MarkDuplicates Tracking 1174671 as yet unmatched pairs. 13882 records in RAM.
INFO 2026-06-08 08:19:05 MarkDuplicates Read 60,000,000 records. Elapsed time: 00:01:43s. Time for last 1,000,000: 2s. Last read position: chr2:219,425,951
INFO 2026-06-08 08:19:05 MarkDuplicates Tracking 1172313 as yet unmatched pairs. 11511 records in RAM.
INFO 2026-06-08 08:19:07 MarkDuplicates Read 61,000,000 records. Elapsed time: 00:01:45s. Time for last 1,000,000: 1s. Last read position: chr2:231,461,850
INFO 2026-06-08 08:19:07 MarkDuplicates Tracking 1168535 as yet unmatched pairs. 7678 records in RAM.
INFO 2026-06-08 08:19:09 MarkDuplicates Read 62,000,000 records. Elapsed time: 00:01:47s. Time for last 1,000,000: 2s. Last read position: chr2:237,371,788
INFO 2026-06-08 08:19:09 MarkDuplicates Tracking 1166269 as yet unmatched pairs. 5385 records in RAM.
INFO 2026-06-08 08:19:11 MarkDuplicates Read 63,000,000 records. Elapsed time: 00:01:49s. Time for last 1,000,000: 1s. Last read position: chr2:241,318,199
INFO 2026-06-08 08:19:11 MarkDuplicates Tracking 1162043 as yet unmatched pairs. 1118 records in RAM.
INFO 2026-06-08 08:19:13 MarkDuplicates Read 64,000,000 records. Elapsed time: 00:01:51s. Time for last 1,000,000: 2s. Last read position: chr3:10,248,992
INFO 2026-06-08 08:19:13 MarkDuplicates Tracking 1158899 as yet unmatched pairs. 49347 records in RAM.
INFO 2026-06-08 08:19:15 MarkDuplicates Read 65,000,000 records. Elapsed time: 00:01:53s. Time for last 1,000,000: 1s. Last read position: chr3:17,010,863
INFO 2026-06-08 08:19:15 MarkDuplicates Tracking 1155879 as yet unmatched pairs. 46270 records in RAM.
INFO 2026-06-08 08:19:16 MarkDuplicates Read 66,000,000 records. Elapsed time: 00:01:54s. Time for last 1,000,000: 1s. Last read position: chr3:38,909,031
INFO 2026-06-08 08:19:16 MarkDuplicates Tracking 1153048 as yet unmatched pairs. 43367 records in RAM.
INFO 2026-06-08 08:19:18 MarkDuplicates Read 67,000,000 records. Elapsed time: 00:01:56s. Time for last 1,000,000: 1s. Last read position: chr3:45,091,306
INFO 2026-06-08 08:19:18 MarkDuplicates Tracking 1150415 as yet unmatched pairs. 40713 records in RAM.
INFO 2026-06-08 08:19:20 MarkDuplicates Read 68,000,000 records. Elapsed time: 00:01:58s. Time for last 1,000,000: 1s. Last read position: chr3:47,852,850
INFO 2026-06-08 08:19:20 MarkDuplicates Tracking 1147598 as yet unmatched pairs. 37856 records in RAM.
INFO 2026-06-08 08:19:21 MarkDuplicates Read 69,000,000 records. Elapsed time: 00:01:59s. Time for last 1,000,000: 1s. Last read position: chr3:49,011,827
INFO 2026-06-08 08:19:21 MarkDuplicates Tracking 1144397 as yet unmatched pairs. 34601 records in RAM.
INFO 2026-06-08 08:19:22 MarkDuplicates Read 70,000,000 records. Elapsed time: 00:02:01s. Time for last 1,000,000: 1s. Last read position: chr3:49,721,968
INFO 2026-06-08 08:19:22 MarkDuplicates Tracking 1141290 as yet unmatched pairs. 31454 records in RAM.
INFO 2026-06-08 08:19:24 MarkDuplicates Read 71,000,000 records. Elapsed time: 00:02:02s. Time for last 1,000,000: 1s. Last read position: chr3:51,995,054
INFO 2026-06-08 08:19:24 MarkDuplicates Tracking 1137992 as yet unmatched pairs. 28133 records in RAM.
INFO 2026-06-08 08:19:26 MarkDuplicates Read 72,000,000 records. Elapsed time: 00:02:04s. Time for last 1,000,000: 1s. Last read position: chr3:57,096,317
INFO 2026-06-08 08:19:26 MarkDuplicates Tracking 1134956 as yet unmatched pairs. 25041 records in RAM.
INFO 2026-06-08 08:19:27 MarkDuplicates Read 73,000,000 records. Elapsed time: 00:02:05s. Time for last 1,000,000: 1s. Last read position: chr3:78,938,629
INFO 2026-06-08 08:19:27 MarkDuplicates Tracking 1132100 as yet unmatched pairs. 22122 records in RAM.
INFO 2026-06-08 08:19:29 MarkDuplicates Read 74,000,000 records. Elapsed time: 00:02:07s. Time for last 1,000,000: 1s. Last read position: chr3:119,414,829
INFO 2026-06-08 08:19:29 MarkDuplicates Tracking 1129502 as yet unmatched pairs. 19488 records in RAM.
INFO 2026-06-08 08:19:31 MarkDuplicates Read 75,000,000 records. Elapsed time: 00:02:09s. Time for last 1,000,000: 2s. Last read position: chr3:126,026,361
INFO 2026-06-08 08:19:31 MarkDuplicates Tracking 1126784 as yet unmatched pairs. 16730 records in RAM.
INFO 2026-06-08 08:19:33 MarkDuplicates Read 76,000,000 records. Elapsed time: 00:02:11s. Time for last 1,000,000: 1s. Last read position: chr3:133,574,032
INFO 2026-06-08 08:19:33 MarkDuplicates Tracking 1123542 as yet unmatched pairs. 13455 records in RAM.
INFO 2026-06-08 08:19:34 MarkDuplicates Read 77,000,000 records. Elapsed time: 00:02:12s. Time for last 1,000,000: 1s. Last read position: chr3:154,295,321
INFO 2026-06-08 08:19:34 MarkDuplicates Tracking 1120586 as yet unmatched pairs. 10461 records in RAM.
INFO 2026-06-08 08:19:35 MarkDuplicates Read 78,000,000 records. Elapsed time: 00:02:14s. Time for last 1,000,000: 1s. Last read position: chr3:183,951,534
INFO 2026-06-08 08:19:35 MarkDuplicates Tracking 1117964 as yet unmatched pairs. 7782 records in RAM.
INFO 2026-06-08 08:19:37 MarkDuplicates Read 79,000,000 records. Elapsed time: 00:02:15s. Time for last 1,000,000: 1s. Last read position: chr3:188,335,162
INFO 2026-06-08 08:19:37 MarkDuplicates Tracking 1115580 as yet unmatched pairs. 5366 records in RAM.
INFO 2026-06-08 08:19:38 MarkDuplicates Read 80,000,000 records. Elapsed time: 00:02:17s. Time for last 1,000,000: 1s. Last read position: chr3:195,725,273
INFO 2026-06-08 08:19:38 MarkDuplicates Tracking 1113001 as yet unmatched pairs. 2767 records in RAM.
INFO 2026-06-08 08:19:40 MarkDuplicates Read 81,000,000 records. Elapsed time: 00:02:18s. Time for last 1,000,000: 1s. Last read position: chr3:196,947,259
INFO 2026-06-08 08:19:40 MarkDuplicates Tracking 1111135 as yet unmatched pairs. 885 records in RAM.
INFO 2026-06-08 08:19:41 MarkDuplicates Read 82,000,000 records. Elapsed time: 00:02:20s. Time for last 1,000,000: 1s. Last read position: chr4:1,236,865
INFO 2026-06-08 08:19:41 MarkDuplicates Tracking 1108309 as yet unmatched pairs. 29816 records in RAM.
INFO 2026-06-08 08:19:43 MarkDuplicates Read 83,000,000 records. Elapsed time: 00:02:21s. Time for last 1,000,000: 1s. Last read position: chr4:3,173,063
INFO 2026-06-08 08:19:43 MarkDuplicates Tracking 1104351 as yet unmatched pairs. 25824 records in RAM.
INFO 2026-06-08 08:19:45 MarkDuplicates Read 84,000,000 records. Elapsed time: 00:02:23s. Time for last 1,000,000: 1s. Last read position: chr4:13,542,416
INFO 2026-06-08 08:19:45 MarkDuplicates Tracking 1101257 as yet unmatched pairs. 22699 records in RAM.
INFO 2026-06-08 08:19:46 MarkDuplicates Read 85,000,000 records. Elapsed time: 00:02:24s. Time for last 1,000,000: 1s. Last read position: chr4:40,438,213
INFO 2026-06-08 08:19:46 MarkDuplicates Tracking 1098397 as yet unmatched pairs. 19805 records in RAM.
INFO 2026-06-08 08:19:47 MarkDuplicates Read 86,000,000 records. Elapsed time: 00:02:26s. Time for last 1,000,000: 1s. Last read position: chr4:70,662,126
INFO 2026-06-08 08:19:47 MarkDuplicates Tracking 1095774 as yet unmatched pairs. 17123 records in RAM.
INFO 2026-06-08 08:19:49 MarkDuplicates Read 87,000,000 records. Elapsed time: 00:02:27s. Time for last 1,000,000: 1s. Last read position: chr4:82,427,203
INFO 2026-06-08 08:19:49 MarkDuplicates Tracking 1092413 as yet unmatched pairs. 13728 records in RAM.
INFO 2026-06-08 08:19:51 MarkDuplicates Read 88,000,000 records. Elapsed time: 00:02:29s. Time for last 1,000,000: 1s. Last read position: chr4:106,347,556
INFO 2026-06-08 08:19:51 MarkDuplicates Tracking 1089953 as yet unmatched pairs. 11220 records in RAM.
INFO 2026-06-08 08:19:52 MarkDuplicates Read 89,000,000 records. Elapsed time: 00:02:30s. Time for last 1,000,000: 1s. Last read position: chr4:128,074,466
INFO 2026-06-08 08:19:52 MarkDuplicates Tracking 1087307 as yet unmatched pairs. 8554 records in RAM.
INFO 2026-06-08 08:19:54 MarkDuplicates Read 90,000,000 records. Elapsed time: 00:02:32s. Time for last 1,000,000: 1s. Last read position: chr4:151,104,204
INFO 2026-06-08 08:19:54 MarkDuplicates Tracking 1085523 as yet unmatched pairs. 6710 records in RAM.
INFO 2026-06-08 08:19:56 MarkDuplicates Read 91,000,000 records. Elapsed time: 00:02:34s. Time for last 1,000,000: 1s. Last read position: chr4:168,878,150
INFO 2026-06-08 08:19:56 MarkDuplicates Tracking 1081946 as yet unmatched pairs. 3102 records in RAM.
INFO 2026-06-08 08:19:58 MarkDuplicates Read 92,000,000 records. Elapsed time: 00:02:36s. Time for last 1,000,000: 2s. Last read position: chr5:271,687
INFO 2026-06-08 08:19:58 MarkDuplicates Tracking 1078810 as yet unmatched pairs. 47488 records in RAM.
INFO 2026-06-08 08:20:00 MarkDuplicates Read 93,000,000 records. Elapsed time: 00:02:38s. Time for last 1,000,000: 1s. Last read position: chr5:14,387,789
INFO 2026-06-08 08:20:00 MarkDuplicates Tracking 1075709 as yet unmatched pairs. 44346 records in RAM.
INFO 2026-06-08 08:20:01 MarkDuplicates Read 94,000,000 records. Elapsed time: 00:02:39s. Time for last 1,000,000: 1s. Last read position: chr5:34,004,654
INFO 2026-06-08 08:20:01 MarkDuplicates Tracking 1072467 as yet unmatched pairs. 41078 records in RAM.
INFO 2026-06-08 08:20:02 MarkDuplicates Read 95,000,000 records. Elapsed time: 00:02:41s. Time for last 1,000,000: 1s. Last read position: chr5:67,165,669
INFO 2026-06-08 08:20:02 MarkDuplicates Tracking 1069825 as yet unmatched pairs. 38393 records in RAM.
INFO 2026-06-08 08:20:04 MarkDuplicates Read 96,000,000 records. Elapsed time: 00:02:42s. Time for last 1,000,000: 1s. Last read position: chr5:80,146,198
INFO 2026-06-08 08:20:04 MarkDuplicates Tracking 1067874 as yet unmatched pairs. 36410 records in RAM.
INFO 2026-06-08 08:20:06 MarkDuplicates Read 97,000,000 records. Elapsed time: 00:02:44s. Time for last 1,000,000: 1s. Last read position: chr5:112,840,688
INFO 2026-06-08 08:20:06 MarkDuplicates Tracking 1064869 as yet unmatched pairs. 33355 records in RAM.
INFO 2026-06-08 08:20:07 MarkDuplicates Read 98,000,000 records. Elapsed time: 00:02:45s. Time for last 1,000,000: 1s. Last read position: chr5:132,823,255
INFO 2026-06-08 08:20:07 MarkDuplicates Tracking 1062232 as yet unmatched pairs. 30680 records in RAM.
INFO 2026-06-08 08:20:09 MarkDuplicates Read 99,000,000 records. Elapsed time: 00:02:47s. Time for last 1,000,000: 1s. Last read position: chr5:136,054,003
INFO 2026-06-08 08:20:09 MarkDuplicates Tracking 1058917 as yet unmatched pairs. 27341 records in RAM.
INFO 2026-06-08 08:20:11 MarkDuplicates Read 100,000,000 records. Elapsed time: 00:02:49s. Time for last 1,000,000: 1s. Last read position: chr5:140,449,151
INFO 2026-06-08 08:20:11 MarkDuplicates Tracking 1055833 as yet unmatched pairs. 24146 records in RAM.
INFO 2026-06-08 08:20:12 MarkDuplicates Read 101,000,000 records. Elapsed time: 00:02:50s. Time for last 1,000,000: 1s. Last read position: chr5:141,928,270
INFO 2026-06-08 08:20:12 MarkDuplicates Tracking 1053031 as yet unmatched pairs. 21333 records in RAM.
INFO 2026-06-08 08:20:14 MarkDuplicates Read 102,000,000 records. Elapsed time: 00:02:52s. Time for last 1,000,000: 1s. Last read position: chr5:150,135,810
INFO 2026-06-08 08:20:14 MarkDuplicates Tracking 1050684 as yet unmatched pairs. 18951 records in RAM.
INFO 2026-06-08 08:20:15 MarkDuplicates Read 103,000,000 records. Elapsed time: 00:02:53s. Time for last 1,000,000: 1s. Last read position: chr5:151,042,637
INFO 2026-06-08 08:20:15 MarkDuplicates Tracking 1047161 as yet unmatched pairs. 15403 records in RAM.
INFO 2026-06-08 08:20:17 MarkDuplicates Read 104,000,000 records. Elapsed time: 00:02:55s. Time for last 1,000,000: 1s. Last read position: chr5:168,385,413
INFO 2026-06-08 08:20:17 MarkDuplicates Tracking 1044130 as yet unmatched pairs. 12340 records in RAM.
INFO 2026-06-08 08:20:19 MarkDuplicates Read 105,000,000 records. Elapsed time: 00:02:57s. Time for last 1,000,000: 1s. Last read position: chr5:176,384,350
INFO 2026-06-08 08:20:19 MarkDuplicates Tracking 1041467 as yet unmatched pairs. 9655 records in RAM.
INFO 2026-06-08 08:20:20 MarkDuplicates Read 106,000,000 records. Elapsed time: 00:02:58s. Time for last 1,000,000: 1s. Last read position: chr5:178,055,707
INFO 2026-06-08 08:20:20 MarkDuplicates Tracking 1038088 as yet unmatched pairs. 6233 records in RAM.
INFO 2026-06-08 08:20:21 MarkDuplicates Read 107,000,000 records. Elapsed time: 00:03:00s. Time for last 1,000,000: 1s. Last read position: chr5:179,823,980
INFO 2026-06-08 08:20:21 MarkDuplicates Tracking 1035003 as yet unmatched pairs. 3125 records in RAM.
INFO 2026-06-08 08:20:23 MarkDuplicates Read 108,000,000 records. Elapsed time: 00:03:02s. Time for last 1,000,000: 1s. Last read position: chr6:637,711
INFO 2026-06-08 08:20:23 MarkDuplicates Tracking 1031803 as yet unmatched pairs. 54387 records in RAM.
INFO 2026-06-08 08:20:26 MarkDuplicates Read 109,000,000 records. Elapsed time: 00:03:04s. Time for last 1,000,000: 2s. Last read position: chr6:7,582,767
INFO 2026-06-08 08:20:26 MarkDuplicates Tracking 1028426 as yet unmatched pairs. 50982 records in RAM.
INFO 2026-06-08 08:20:28 MarkDuplicates Read 110,000,000 records. Elapsed time: 00:03:06s. Time for last 1,000,000: 1s. Last read position: chr6:26,123,527
INFO 2026-06-08 08:20:28 MarkDuplicates Tracking 1025791 as yet unmatched pairs. 48299 records in RAM.
INFO 2026-06-08 08:20:30 MarkDuplicates Read 111,000,000 records. Elapsed time: 00:03:08s. Time for last 1,000,000: 1s. Last read position: chr6:29,828,785
INFO 2026-06-08 08:20:30 MarkDuplicates Tracking 1022380 as yet unmatched pairs. 44871 records in RAM.
INFO 2026-06-08 08:20:31 MarkDuplicates Read 112,000,000 records. Elapsed time: 00:03:09s. Time for last 1,000,000: 1s. Last read position: chr6:30,892,439
INFO 2026-06-08 08:20:31 MarkDuplicates Tracking 1020181 as yet unmatched pairs. 42647 records in RAM.
INFO 2026-06-08 08:20:34 MarkDuplicates Read 113,000,000 records. Elapsed time: 00:03:12s. Time for last 1,000,000: 2s. Last read position: chr6:31,644,172
INFO 2026-06-08 08:20:34 MarkDuplicates Tracking 1017003 as yet unmatched pairs. 39445 records in RAM.
INFO 2026-06-08 08:20:35 MarkDuplicates Read 114,000,000 records. Elapsed time: 00:03:13s. Time for last 1,000,000: 1s. Last read position: chr6:31,870,997
INFO 2026-06-08 08:20:35 MarkDuplicates Tracking 1014023 as yet unmatched pairs. 36444 records in RAM.
INFO 2026-06-08 08:20:37 MarkDuplicates Read 115,000,000 records. Elapsed time: 00:03:15s. Time for last 1,000,000: 1s. Last read position: chr6:32,521,999
INFO 2026-06-08 08:20:37 MarkDuplicates Tracking 1011192 as yet unmatched pairs. 33592 records in RAM.
INFO 2026-06-08 08:20:38 MarkDuplicates Read 116,000,000 records. Elapsed time: 00:03:17s. Time for last 1,000,000: 1s. Last read position: chr6:33,621,353
INFO 2026-06-08 08:20:38 MarkDuplicates Tracking 1007991 as yet unmatched pairs. 30363 records in RAM.
INFO 2026-06-08 08:20:41 MarkDuplicates Read 117,000,000 records. Elapsed time: 00:03:19s. Time for last 1,000,000: 2s. Last read position: chr6:37,025,658
INFO 2026-06-08 08:20:41 MarkDuplicates Tracking 1004970 as yet unmatched pairs. 27311 records in RAM.
INFO 2026-06-08 08:20:42 MarkDuplicates Read 118,000,000 records. Elapsed time: 00:03:20s. Time for last 1,000,000: 1s. Last read position: chr6:43,206,094
INFO 2026-06-08 08:20:42 MarkDuplicates Tracking 1001772 as yet unmatched pairs. 24074 records in RAM.
INFO 2026-06-08 08:20:44 MarkDuplicates Read 119,000,000 records. Elapsed time: 00:03:22s. Time for last 1,000,000: 1s. Last read position: chr6:53,294,281
INFO 2026-06-08 08:20:44 MarkDuplicates Tracking 998768 as yet unmatched pairs. 20999 records in RAM.
INFO 2026-06-08 08:20:46 MarkDuplicates Read 120,000,000 records. Elapsed time: 00:03:24s. Time for last 1,000,000: 1s. Last read position: chr6:78,997,445
INFO 2026-06-08 08:20:46 MarkDuplicates Tracking 996115 as yet unmatched pairs. 18306 records in RAM.
INFO 2026-06-08 08:20:48 MarkDuplicates Read 121,000,000 records. Elapsed time: 00:03:26s. Time for last 1,000,000: 2s. Last read position: chr6:108,561,361
INFO 2026-06-08 08:20:48 MarkDuplicates Tracking 993193 as yet unmatched pairs. 15346 records in RAM.
INFO 2026-06-08 08:20:50 MarkDuplicates Read 122,000,000 records. Elapsed time: 00:03:28s. Time for last 1,000,000: 1s. Last read position: chr6:127,998,749
INFO 2026-06-08 08:20:50 MarkDuplicates Tracking 990219 as yet unmatched pairs. 12322 records in RAM.
INFO 2026-06-08 08:20:51 MarkDuplicates Read 123,000,000 records. Elapsed time: 00:03:30s. Time for last 1,000,000: 1s. Last read position: chr6:138,291,999
INFO 2026-06-08 08:20:51 MarkDuplicates Tracking 987204 as yet unmatched pairs. 9261 records in RAM.
INFO 2026-06-08 08:20:53 MarkDuplicates Read 124,000,000 records. Elapsed time: 00:03:31s. Time for last 1,000,000: 1s. Last read position: chr6:152,331,325
INFO 2026-06-08 08:20:53 MarkDuplicates Tracking 984300 as yet unmatched pairs. 6320 records in RAM.
INFO 2026-06-08 08:20:56 MarkDuplicates Read 125,000,000 records. Elapsed time: 00:03:34s. Time for last 1,000,000: 2s. Last read position: chr6:159,232,715
INFO 2026-06-08 08:20:56 MarkDuplicates Tracking 981332 as yet unmatched pairs. 3334 records in RAM.
INFO 2026-06-08 08:20:58 MarkDuplicates Read 126,000,000 records. Elapsed time: 00:03:36s. Time for last 1,000,000: 2s. Last read position: chr6:170,317,382
INFO 2026-06-08 08:20:58 MarkDuplicates Tracking 978315 as yet unmatched pairs. 277 records in RAM.
INFO 2026-06-08 08:21:02 MarkDuplicates Read 127,000,000 records. Elapsed time: 00:03:40s. Time for last 1,000,000: 3s. Last read position: chr7:2,520,052
INFO 2026-06-08 08:21:02 MarkDuplicates Tracking 974592 as yet unmatched pairs. 117431 records in RAM.
INFO 2026-06-08 08:21:04 MarkDuplicates Read 128,000,000 records. Elapsed time: 00:03:42s. Time for last 1,000,000: 2s. Last read position: chr7:5,370,671
INFO 2026-06-08 08:21:04 MarkDuplicates Tracking 971542 as yet unmatched pairs. 114342 records in RAM.
INFO 2026-06-08 08:21:06 MarkDuplicates Read 129,000,000 records. Elapsed time: 00:03:45s. Time for last 1,000,000: 2s. Last read position: chr7:5,528,359
INFO 2026-06-08 08:21:06 MarkDuplicates Tracking 970536 as yet unmatched pairs. 113310 records in RAM.
INFO 2026-06-08 08:21:08 MarkDuplicates Read 130,000,000 records. Elapsed time: 00:03:46s. Time for last 1,000,000: 1s. Last read position: chr7:6,692,089
INFO 2026-06-08 08:21:08 MarkDuplicates Tracking 964097 as yet unmatched pairs. 106833 records in RAM.
INFO 2026-06-08 08:21:10 MarkDuplicates Read 131,000,000 records. Elapsed time: 00:03:48s. Time for last 1,000,000: 1s. Last read position: chr7:27,245,124
INFO 2026-06-08 08:21:10 MarkDuplicates Tracking 961235 as yet unmatched pairs. 103937 records in RAM.
INFO 2026-06-08 08:21:12 MarkDuplicates Read 132,000,000 records. Elapsed time: 00:03:50s. Time for last 1,000,000: 1s. Last read position: chr7:43,878,902
INFO 2026-06-08 08:21:12 MarkDuplicates Tracking 958079 as yet unmatched pairs. 100737 records in RAM.
INFO 2026-06-08 08:21:14 MarkDuplicates Read 133,000,000 records. Elapsed time: 00:03:52s. Time for last 1,000,000: 1s. Last read position: chr7:45,083,897
INFO 2026-06-08 08:21:14 MarkDuplicates Tracking 955037 as yet unmatched pairs. 97671 records in RAM.
INFO 2026-06-08 08:21:16 MarkDuplicates Read 134,000,000 records. Elapsed time: 00:03:54s. Time for last 1,000,000: 1s. Last read position: chr7:57,004,424
INFO 2026-06-08 08:21:16 MarkDuplicates Tracking 951955 as yet unmatched pairs. 94562 records in RAM.
INFO 2026-06-08 08:21:17 MarkDuplicates Read 135,000,000 records. Elapsed time: 00:03:55s. Time for last 1,000,000: 1s. Last read position: chr7:73,175,483
INFO 2026-06-08 08:21:17 MarkDuplicates Tracking 949916 as yet unmatched pairs. 92488 records in RAM.
INFO 2026-06-08 08:21:19 MarkDuplicates Read 136,000,000 records. Elapsed time: 00:03:57s. Time for last 1,000,000: 1s. Last read position: chr7:73,841,132
INFO 2026-06-08 08:21:19 MarkDuplicates Tracking 947206 as yet unmatched pairs. 89748 records in RAM.
INFO 2026-06-08 08:21:21 MarkDuplicates Read 137,000,000 records. Elapsed time: 00:03:59s. Time for last 1,000,000: 1s. Last read position: chr7:75,422,374
INFO 2026-06-08 08:21:21 MarkDuplicates Tracking 945353 as yet unmatched pairs. 87876 records in RAM.
INFO 2026-06-08 08:21:23 MarkDuplicates Read 138,000,000 records. Elapsed time: 00:04:01s. Time for last 1,000,000: 1s. Last read position: chr7:76,504,357
INFO 2026-06-08 08:21:23 MarkDuplicates Tracking 941853 as yet unmatched pairs. 84343 records in RAM.
INFO 2026-06-08 08:21:24 MarkDuplicates Read 139,000,000 records. Elapsed time: 00:04:02s. Time for last 1,000,000: 1s. Last read position: chr7:92,131,850
INFO 2026-06-08 08:21:24 MarkDuplicates Tracking 939683 as yet unmatched pairs. 82150 records in RAM.
INFO 2026-06-08 08:21:27 MarkDuplicates Read 140,000,000 records. Elapsed time: 00:04:05s. Time for last 1,000,000: 2s. Last read position: chr7:94,425,778
INFO 2026-06-08 08:21:27 MarkDuplicates Tracking 937911 as yet unmatched pairs. 80355 records in RAM.
INFO 2026-06-08 08:21:29 MarkDuplicates Read 141,000,000 records. Elapsed time: 00:04:07s. Time for last 1,000,000: 2s. Last read position: chr7:99,460,090
INFO 2026-06-08 08:21:29 MarkDuplicates Tracking 933201 as yet unmatched pairs. 75613 records in RAM.
INFO 2026-06-08 08:21:31 MarkDuplicates Read 142,000,000 records. Elapsed time: 00:04:09s. Time for last 1,000,000: 1s. Last read position: chr7:100,554,126
INFO 2026-06-08 08:21:31 MarkDuplicates Tracking 930236 as yet unmatched pairs. 72623 records in RAM.
INFO 2026-06-08 08:21:32 MarkDuplicates Read 143,000,000 records. Elapsed time: 00:04:10s. Time for last 1,000,000: 1s. Last read position: chr7:100,991,088
INFO 2026-06-08 08:21:32 MarkDuplicates Tracking 927817 as yet unmatched pairs. 70193 records in RAM.
INFO 2026-06-08 08:21:34 MarkDuplicates Read 144,000,000 records. Elapsed time: 00:04:12s. Time for last 1,000,000: 1s. Last read position: chr7:100,992,765
INFO 2026-06-08 08:21:34 MarkDuplicates Tracking 926378 as yet unmatched pairs. 68740 records in RAM.
INFO 2026-06-08 08:21:36 MarkDuplicates Read 145,000,000 records. Elapsed time: 00:04:14s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,173
INFO 2026-06-08 08:21:36 MarkDuplicates Tracking 925152 as yet unmatched pairs. 67503 records in RAM.
INFO 2026-06-08 08:21:37 MarkDuplicates Read 146,000,000 records. Elapsed time: 00:04:15s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,594
INFO 2026-06-08 08:21:37 MarkDuplicates Tracking 924802 as yet unmatched pairs. 67152 records in RAM.
INFO 2026-06-08 08:21:38 MarkDuplicates Read 147,000,000 records. Elapsed time: 00:04:17s. Time for last 1,000,000: 1s. Last read position: chr7:100,993,939
INFO 2026-06-08 08:21:38 MarkDuplicates Tracking 923618 as yet unmatched pairs. 65968 records in RAM.
INFO 2026-06-08 08:21:40 MarkDuplicates Read 148,000,000 records. Elapsed time: 00:04:18s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,229
INFO 2026-06-08 08:21:40 MarkDuplicates Tracking 924439 as yet unmatched pairs. 66788 records in RAM.
INFO 2026-06-08 08:21:41 MarkDuplicates Read 149,000,000 records. Elapsed time: 00:04:19s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,760
INFO 2026-06-08 08:21:41 MarkDuplicates Tracking 922231 as yet unmatched pairs. 64580 records in RAM.
INFO 2026-06-08 08:21:42 MarkDuplicates Read 150,000,000 records. Elapsed time: 00:04:20s. Time for last 1,000,000: 1s. Last read position: chr7:100,994,982
INFO 2026-06-08 08:21:42 MarkDuplicates Tracking 922241 as yet unmatched pairs. 64590 records in RAM.
INFO 2026-06-08 08:21:43 MarkDuplicates Read 151,000,000 records. Elapsed time: 00:04:21s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,250
INFO 2026-06-08 08:21:43 MarkDuplicates Tracking 922666 as yet unmatched pairs. 65015 records in RAM.
INFO 2026-06-08 08:21:44 MarkDuplicates Read 152,000,000 records. Elapsed time: 00:04:23s. Time for last 1,000,000: 1s. Last read position: chr7:100,995,726
INFO 2026-06-08 08:21:44 MarkDuplicates Tracking 922835 as yet unmatched pairs. 65182 records in RAM.
INFO 2026-06-08 08:21:46 MarkDuplicates Read 153,000,000 records. Elapsed time: 00:04:24s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,109
INFO 2026-06-08 08:21:46 MarkDuplicates Tracking 921978 as yet unmatched pairs. 64321 records in RAM.
INFO 2026-06-08 08:21:47 MarkDuplicates Read 154,000,000 records. Elapsed time: 00:04:25s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,314
INFO 2026-06-08 08:21:47 MarkDuplicates Tracking 923859 as yet unmatched pairs. 66201 records in RAM.
INFO 2026-06-08 08:21:48 MarkDuplicates Read 155,000,000 records. Elapsed time: 00:04:26s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,427
INFO 2026-06-08 08:21:48 MarkDuplicates Tracking 935254 as yet unmatched pairs. 77595 records in RAM.
INFO 2026-06-08 08:21:50 MarkDuplicates Read 156,000,000 records. Elapsed time: 00:04:28s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,594
INFO 2026-06-08 08:21:50 MarkDuplicates Tracking 932814 as yet unmatched pairs. 75139 records in RAM.
INFO 2026-06-08 08:21:51 MarkDuplicates Read 157,000,000 records. Elapsed time: 00:04:30s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,736
INFO 2026-06-08 08:21:51 MarkDuplicates Tracking 929447 as yet unmatched pairs. 71763 records in RAM.
INFO 2026-06-08 08:21:53 MarkDuplicates Read 158,000,000 records. Elapsed time: 00:04:31s. Time for last 1,000,000: 1s. Last read position: chr7:100,996,825
INFO 2026-06-08 08:21:53 MarkDuplicates Tracking 932907 as yet unmatched pairs. 75216 records in RAM.
INFO 2026-06-08 08:21:55 MarkDuplicates Read 159,000,000 records. Elapsed time: 00:04:33s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,036
INFO 2026-06-08 08:21:55 MarkDuplicates Tracking 920430 as yet unmatched pairs. 62727 records in RAM.
INFO 2026-06-08 08:21:57 MarkDuplicates Read 160,000,000 records. Elapsed time: 00:04:35s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,218
INFO 2026-06-08 08:21:57 MarkDuplicates Tracking 912859 as yet unmatched pairs. 55150 records in RAM.
INFO 2026-06-08 08:21:58 MarkDuplicates Read 161,000,000 records. Elapsed time: 00:04:36s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,437
INFO 2026-06-08 08:21:58 MarkDuplicates Tracking 922794 as yet unmatched pairs. 65081 records in RAM.
INFO 2026-06-08 08:22:00 MarkDuplicates Read 162,000,000 records. Elapsed time: 00:04:38s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,581
INFO 2026-06-08 08:22:00 MarkDuplicates Tracking 916822 as yet unmatched pairs. 59100 records in RAM.
INFO 2026-06-08 08:22:02 MarkDuplicates Read 163,000,000 records. Elapsed time: 00:04:40s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,817
INFO 2026-06-08 08:22:02 MarkDuplicates Tracking 905976 as yet unmatched pairs. 48249 records in RAM.
INFO 2026-06-08 08:22:03 MarkDuplicates Read 164,000,000 records. Elapsed time: 00:04:41s. Time for last 1,000,000: 1s. Last read position: chr7:100,997,990
INFO 2026-06-08 08:22:03 MarkDuplicates Tracking 905835 as yet unmatched pairs. 48104 records in RAM.
INFO 2026-06-08 08:22:04 MarkDuplicates Read 165,000,000 records. Elapsed time: 00:04:42s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,253
INFO 2026-06-08 08:22:04 MarkDuplicates Tracking 904789 as yet unmatched pairs. 47056 records in RAM.
INFO 2026-06-08 08:22:05 MarkDuplicates Read 166,000,000 records. Elapsed time: 00:04:43s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,482
INFO 2026-06-08 08:22:05 MarkDuplicates Tracking 904708 as yet unmatched pairs. 46975 records in RAM.
INFO 2026-06-08 08:22:06 MarkDuplicates Read 167,000,000 records. Elapsed time: 00:04:45s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,650
INFO 2026-06-08 08:22:06 MarkDuplicates Tracking 929657 as yet unmatched pairs. 71924 records in RAM.
INFO 2026-06-08 08:22:08 MarkDuplicates Read 168,000,000 records. Elapsed time: 00:04:46s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,811
INFO 2026-06-08 08:22:08 MarkDuplicates Tracking 904034 as yet unmatched pairs. 46297 records in RAM.
INFO 2026-06-08 08:22:09 MarkDuplicates Read 169,000,000 records. Elapsed time: 00:04:47s. Time for last 1,000,000: 1s. Last read position: chr7:100,998,957
INFO 2026-06-08 08:22:09 MarkDuplicates Tracking 903056 as yet unmatched pairs. 45319 records in RAM.
INFO 2026-06-08 08:22:10 MarkDuplicates Read 170,000,000 records. Elapsed time: 00:04:49s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,083
INFO 2026-06-08 08:22:10 MarkDuplicates Tracking 907795 as yet unmatched pairs. 50058 records in RAM.
INFO 2026-06-08 08:22:12 MarkDuplicates Read 171,000,000 records. Elapsed time: 00:04:50s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,322
INFO 2026-06-08 08:22:12 MarkDuplicates Tracking 906327 as yet unmatched pairs. 48585 records in RAM.
INFO 2026-06-08 08:22:14 MarkDuplicates Read 172,000,000 records. Elapsed time: 00:04:52s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,574
INFO 2026-06-08 08:22:14 MarkDuplicates Tracking 907122 as yet unmatched pairs. 49372 records in RAM.
INFO 2026-06-08 08:22:15 MarkDuplicates Read 173,000,000 records. Elapsed time: 00:04:53s. Time for last 1,000,000: 1s. Last read position: chr7:100,999,852
INFO 2026-06-08 08:22:15 MarkDuplicates Tracking 903603 as yet unmatched pairs. 45840 records in RAM.
INFO 2026-06-08 08:22:17 MarkDuplicates Read 174,000,000 records. Elapsed time: 00:04:55s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,080
INFO 2026-06-08 08:22:17 MarkDuplicates Tracking 903100 as yet unmatched pairs. 45331 records in RAM.
INFO 2026-06-08 08:22:19 MarkDuplicates Read 175,000,000 records. Elapsed time: 00:04:57s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,358
INFO 2026-06-08 08:22:19 MarkDuplicates Tracking 901067 as yet unmatched pairs. 43295 records in RAM.
INFO 2026-06-08 08:22:20 MarkDuplicates Read 176,000,000 records. Elapsed time: 00:04:58s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,512
INFO 2026-06-08 08:22:20 MarkDuplicates Tracking 895233 as yet unmatched pairs. 37454 records in RAM.
INFO 2026-06-08 08:22:22 MarkDuplicates Read 177,000,000 records. Elapsed time: 00:05:00s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,784
INFO 2026-06-08 08:22:22 MarkDuplicates Tracking 900988 as yet unmatched pairs. 43203 records in RAM.
INFO 2026-06-08 08:22:23 MarkDuplicates Read 178,000,000 records. Elapsed time: 00:05:01s. Time for last 1,000,000: 1s. Last read position: chr7:101,000,987
INFO 2026-06-08 08:22:23 MarkDuplicates Tracking 900113 as yet unmatched pairs. 42326 records in RAM.
INFO 2026-06-08 08:22:25 MarkDuplicates Read 179,000,000 records. Elapsed time: 00:05:03s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,169
INFO 2026-06-08 08:22:25 MarkDuplicates Tracking 894091 as yet unmatched pairs. 36299 records in RAM.
INFO 2026-06-08 08:22:26 MarkDuplicates Read 180,000,000 records. Elapsed time: 00:05:04s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,412
INFO 2026-06-08 08:22:26 MarkDuplicates Tracking 888367 as yet unmatched pairs. 30570 records in RAM.
INFO 2026-06-08 08:22:27 MarkDuplicates Read 181,000,000 records. Elapsed time: 00:05:06s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,503
INFO 2026-06-08 08:22:27 MarkDuplicates Tracking 888178 as yet unmatched pairs. 30381 records in RAM.
INFO 2026-06-08 08:22:29 MarkDuplicates Read 182,000,000 records. Elapsed time: 00:05:07s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,743
INFO 2026-06-08 08:22:29 MarkDuplicates Tracking 888197 as yet unmatched pairs. 30400 records in RAM.
INFO 2026-06-08 08:22:30 MarkDuplicates Read 183,000,000 records. Elapsed time: 00:05:08s. Time for last 1,000,000: 1s. Last read position: chr7:101,001,916
INFO 2026-06-08 08:22:30 MarkDuplicates Tracking 888791 as yet unmatched pairs. 30993 records in RAM.
INFO 2026-06-08 08:22:31 MarkDuplicates Read 184,000,000 records. Elapsed time: 00:05:09s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,247
INFO 2026-06-08 08:22:31 MarkDuplicates Tracking 888478 as yet unmatched pairs. 30680 records in RAM.
INFO 2026-06-08 08:22:32 MarkDuplicates Read 185,000,000 records. Elapsed time: 00:05:10s. Time for last 1,000,000: 1s. Last read position: chr7:101,002,588
INFO 2026-06-08 08:22:32 MarkDuplicates Tracking 887840 as yet unmatched pairs. 30042 records in RAM.
INFO 2026-06-08 08:22:33 MarkDuplicates Read 186,000,000 records. Elapsed time: 00:05:12s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,066
INFO 2026-06-08 08:22:33 MarkDuplicates Tracking 886264 as yet unmatched pairs. 28456 records in RAM.
INFO 2026-06-08 08:22:35 MarkDuplicates Read 187,000,000 records. Elapsed time: 00:05:13s. Time for last 1,000,000: 1s. Last read position: chr7:101,003,924
INFO 2026-06-08 08:22:35 MarkDuplicates Tracking 885147 as yet unmatched pairs. 27339 records in RAM.
INFO 2026-06-08 08:22:36 MarkDuplicates Read 188,000,000 records. Elapsed time: 00:05:14s. Time for last 1,000,000: 1s. Last read position: chr7:101,004,233
INFO 2026-06-08 08:22:36 MarkDuplicates Tracking 885676 as yet unmatched pairs. 27864 records in RAM.
INFO 2026-06-08 08:22:38 MarkDuplicates Read 189,000,000 records. Elapsed time: 00:05:16s. Time for last 1,000,000: 1s. Last read position: chr7:102,239,319
INFO 2026-06-08 08:22:38 MarkDuplicates Tracking 882403 as yet unmatched pairs. 24565 records in RAM.
INFO 2026-06-08 08:22:39 MarkDuplicates Read 190,000,000 records. Elapsed time: 00:05:17s. Time for last 1,000,000: 1s. Last read position: chr7:102,655,068
INFO 2026-06-08 08:22:39 MarkDuplicates Tracking 881121 as yet unmatched pairs. 23271 records in RAM.
INFO 2026-06-08 08:22:41 MarkDuplicates Read 191,000,000 records. Elapsed time: 00:05:19s. Time for last 1,000,000: 1s. Last read position: chr7:116,699,278
INFO 2026-06-08 08:22:41 MarkDuplicates Tracking 879299 as yet unmatched pairs. 21403 records in RAM.
INFO 2026-06-08 08:22:43 MarkDuplicates Read 192,000,000 records. Elapsed time: 00:05:21s. Time for last 1,000,000: 2s. Last read position: chr7:127,704,860
INFO 2026-06-08 08:22:43 MarkDuplicates Tracking 876794 as yet unmatched pairs. 18860 records in RAM.
INFO 2026-06-08 08:22:45 MarkDuplicates Read 193,000,000 records. Elapsed time: 00:05:23s. Time for last 1,000,000: 1s. Last read position: chr7:129,400,303
INFO 2026-06-08 08:22:45 MarkDuplicates Tracking 872960 as yet unmatched pairs. 15001 records in RAM.
INFO 2026-06-08 08:22:47 MarkDuplicates Read 194,000,000 records. Elapsed time: 00:05:25s. Time for last 1,000,000: 1s. Last read position: chr7:138,861,218
INFO 2026-06-08 08:22:47 MarkDuplicates Tracking 870776 as yet unmatched pairs. 12794 records in RAM.
INFO 2026-06-08 08:22:49 MarkDuplicates Read 195,000,000 records. Elapsed time: 00:05:27s. Time for last 1,000,000: 2s. Last read position: chr7:142,791,893
INFO 2026-06-08 08:22:49 MarkDuplicates Tracking 867180 as yet unmatched pairs. 9182 records in RAM.
INFO 2026-06-08 08:22:51 MarkDuplicates Read 196,000,000 records. Elapsed time: 00:05:29s. Time for last 1,000,000: 2s. Last read position: chr7:149,003,803
INFO 2026-06-08 08:22:51 MarkDuplicates Tracking 865378 as yet unmatched pairs. 7355 records in RAM.
INFO 2026-06-08 08:22:53 MarkDuplicates Read 197,000,000 records. Elapsed time: 00:05:31s. Time for last 1,000,000: 2s. Last read position: chr7:151,071,690
INFO 2026-06-08 08:22:53 MarkDuplicates Tracking 862123 as yet unmatched pairs. 4064 records in RAM.
INFO 2026-06-08 08:22:55 MarkDuplicates Read 198,000,000 records. Elapsed time: 00:05:33s. Time for last 1,000,000: 1s. Last read position: chr7:157,207,733
INFO 2026-06-08 08:22:55 MarkDuplicates Tracking 858826 as yet unmatched pairs. 739 records in RAM.
INFO 2026-06-08 08:22:58 MarkDuplicates Read 199,000,000 records. Elapsed time: 00:05:36s. Time for last 1,000,000: 2s. Last read position: chr8:17,755,092
INFO 2026-06-08 08:22:58 MarkDuplicates Tracking 855817 as yet unmatched pairs. 58764 records in RAM.
INFO 2026-06-08 08:23:00 MarkDuplicates Read 200,000,000 records. Elapsed time: 00:05:38s. Time for last 1,000,000: 1s. Last read position: chr8:23,027,229
INFO 2026-06-08 08:23:00 MarkDuplicates Tracking 852837 as yet unmatched pairs. 55744 records in RAM.
INFO 2026-06-08 08:23:01 MarkDuplicates Read 201,000,000 records. Elapsed time: 00:05:40s. Time for last 1,000,000: 1s. Last read position: chr8:37,696,066
INFO 2026-06-08 08:23:01 MarkDuplicates Tracking 851239 as yet unmatched pairs. 54116 records in RAM.
INFO 2026-06-08 08:23:04 MarkDuplicates Read 202,000,000 records. Elapsed time: 00:05:42s. Time for last 1,000,000: 2s. Last read position: chr8:37,874,883
INFO 2026-06-08 08:23:04 MarkDuplicates Tracking 845509 as yet unmatched pairs. 48373 records in RAM.
INFO 2026-06-08 08:23:06 MarkDuplicates Read 203,000,000 records. Elapsed time: 00:05:44s. Time for last 1,000,000: 1s. Last read position: chr8:43,103,602
INFO 2026-06-08 08:23:06 MarkDuplicates Tracking 842519 as yet unmatched pairs. 45368 records in RAM.
INFO 2026-06-08 08:23:07 MarkDuplicates Read 204,000,000 records. Elapsed time: 00:05:46s. Time for last 1,000,000: 1s. Last read position: chr8:64,615,097
INFO 2026-06-08 08:23:07 MarkDuplicates Tracking 839600 as yet unmatched pairs. 42441 records in RAM.
INFO 2026-06-08 08:23:10 MarkDuplicates Read 205,000,000 records. Elapsed time: 00:05:48s. Time for last 1,000,000: 2s. Last read position: chr8:89,964,409
INFO 2026-06-08 08:23:10 MarkDuplicates Tracking 836943 as yet unmatched pairs. 39763 records in RAM.
INFO 2026-06-08 08:23:11 MarkDuplicates Read 206,000,000 records. Elapsed time: 00:05:50s. Time for last 1,000,000: 1s. Last read position: chr8:100,709,554
INFO 2026-06-08 08:23:11 MarkDuplicates Tracking 834871 as yet unmatched pairs. 37654 records in RAM.
INFO 2026-06-08 08:23:13 MarkDuplicates Read 207,000,000 records. Elapsed time: 00:05:51s. Time for last 1,000,000: 1s. Last read position: chr8:118,580,819
INFO 2026-06-08 08:23:13 MarkDuplicates Tracking 831369 as yet unmatched pairs. 34114 records in RAM.
INFO 2026-06-08 08:23:15 MarkDuplicates Read 208,000,000 records. Elapsed time: 00:05:53s. Time for last 1,000,000: 1s. Last read position: chr8:127,738,709
INFO 2026-06-08 08:23:15 MarkDuplicates Tracking 832029 as yet unmatched pairs. 34719 records in RAM.
INFO 2026-06-08 08:23:17 MarkDuplicates Read 209,000,000 records. Elapsed time: 00:05:55s. Time for last 1,000,000: 1s. Last read position: chr8:141,221,649
INFO 2026-06-08 08:23:17 MarkDuplicates Tracking 824937 as yet unmatched pairs. 27580 records in RAM.
INFO 2026-06-08 08:23:19 MarkDuplicates Read 210,000,000 records. Elapsed time: 00:05:57s. Time for last 1,000,000: 1s. Last read position: chr8:143,804,646
INFO 2026-06-08 08:23:19 MarkDuplicates Tracking 821193 as yet unmatched pairs. 23803 records in RAM.
INFO 2026-06-08 08:23:20 MarkDuplicates Read 211,000,000 records. Elapsed time: 00:05:59s. Time for last 1,000,000: 1s. Last read position: chr8:143,858,953
INFO 2026-06-08 08:23:20 MarkDuplicates Tracking 820157 as yet unmatched pairs. 22764 records in RAM.
INFO 2026-06-08 08:23:22 MarkDuplicates Read 212,000,000 records. Elapsed time: 00:06:00s. Time for last 1,000,000: 1s. Last read position: chr8:143,860,406
INFO 2026-06-08 08:23:22 MarkDuplicates Tracking 818800 as yet unmatched pairs. 21404 records in RAM.
INFO 2026-06-08 08:23:23 MarkDuplicates Read 213,000,000 records. Elapsed time: 00:06:01s. Time for last 1,000,000: 1s. Last read position: chr8:143,861,549
INFO 2026-06-08 08:23:23 MarkDuplicates Tracking 817805 as yet unmatched pairs. 20404 records in RAM.
INFO 2026-06-08 08:23:25 MarkDuplicates Read 214,000,000 records. Elapsed time: 00:06:03s. Time for last 1,000,000: 1s. Last read position: chr8:143,862,922
INFO 2026-06-08 08:23:25 MarkDuplicates Tracking 818803 as yet unmatched pairs. 21399 records in RAM.
INFO 2026-06-08 08:23:26 MarkDuplicates Read 215,000,000 records. Elapsed time: 00:06:04s. Time for last 1,000,000: 1s. Last read position: chr8:143,863,972
INFO 2026-06-08 08:23:26 MarkDuplicates Tracking 814184 as yet unmatched pairs. 16771 records in RAM.
INFO 2026-06-08 08:23:27 MarkDuplicates Read 216,000,000 records. Elapsed time: 00:06:05s. Time for last 1,000,000: 1s. Last read position: chr8:143,865,411
INFO 2026-06-08 08:23:27 MarkDuplicates Tracking 813134 as yet unmatched pairs. 15707 records in RAM.
INFO 2026-06-08 08:23:28 MarkDuplicates Read 217,000,000 records. Elapsed time: 00:06:07s. Time for last 1,000,000: 1s. Last read position: chr8:143,867,076
INFO 2026-06-08 08:23:28 MarkDuplicates Tracking 813115 as yet unmatched pairs. 15685 records in RAM.
INFO 2026-06-08 08:23:30 MarkDuplicates Read 218,000,000 records. Elapsed time: 00:06:08s. Time for last 1,000,000: 1s. Last read position: chr8:143,921,265
INFO 2026-06-08 08:23:30 MarkDuplicates Tracking 811207 as yet unmatched pairs. 13759 records in RAM.
INFO 2026-06-08 08:23:32 MarkDuplicates Read 219,000,000 records. Elapsed time: 00:06:10s. Time for last 1,000,000: 1s. Last read position: chr8:143,992,549
INFO 2026-06-08 08:23:32 MarkDuplicates Tracking 804876 as yet unmatched pairs. 7410 records in RAM.
INFO 2026-06-08 08:23:34 MarkDuplicates Read 220,000,000 records. Elapsed time: 00:06:12s. Time for last 1,000,000: 2s. Last read position: chr8:144,399,157
INFO 2026-06-08 08:23:34 MarkDuplicates Tracking 801188 as yet unmatched pairs. 3690 records in RAM.
INFO 2026-06-08 08:23:36 MarkDuplicates Read 221,000,000 records. Elapsed time: 00:06:14s. Time for last 1,000,000: 2s. Last read position: chr9:711,869
INFO 2026-06-08 08:23:36 MarkDuplicates Tracking 797601 as yet unmatched pairs. 47496 records in RAM.
INFO 2026-06-08 08:23:38 MarkDuplicates Read 222,000,000 records. Elapsed time: 00:06:16s. Time for last 1,000,000: 1s. Last read position: chr9:20,789,358
INFO 2026-06-08 08:23:38 MarkDuplicates Tracking 794580 as yet unmatched pairs. 44410 records in RAM.
INFO 2026-06-08 08:23:40 MarkDuplicates Read 223,000,000 records. Elapsed time: 00:06:18s. Time for last 1,000,000: 2s. Last read position: chr9:35,558,295
INFO 2026-06-08 08:23:40 MarkDuplicates Tracking 791310 as yet unmatched pairs. 41111 records in RAM.
INFO 2026-06-08 08:23:42 MarkDuplicates Read 224,000,000 records. Elapsed time: 00:06:20s. Time for last 1,000,000: 1s. Last read position: chr9:63,317,537
INFO 2026-06-08 08:23:42 MarkDuplicates Tracking 788307 as yet unmatched pairs. 38052 records in RAM.
INFO 2026-06-08 08:23:44 MarkDuplicates Read 225,000,000 records. Elapsed time: 00:06:22s. Time for last 1,000,000: 1s. Last read position: chr9:88,016,327
INFO 2026-06-08 08:23:44 MarkDuplicates Tracking 785701 as yet unmatched pairs. 35432 records in RAM.
INFO 2026-06-08 08:23:46 MarkDuplicates Read 226,000,000 records. Elapsed time: 00:06:24s. Time for last 1,000,000: 1s. Last read position: chr9:93,564,387
INFO 2026-06-08 08:23:46 MarkDuplicates Tracking 782565 as yet unmatched pairs. 32277 records in RAM.
INFO 2026-06-08 08:23:48 MarkDuplicates Read 227,000,000 records. Elapsed time: 00:06:26s. Time for last 1,000,000: 1s. Last read position: chr9:105,506,492
INFO 2026-06-08 08:23:48 MarkDuplicates Tracking 779393 as yet unmatched pairs. 29066 records in RAM.
INFO 2026-06-08 08:23:49 MarkDuplicates Read 228,000,000 records. Elapsed time: 00:06:28s. Time for last 1,000,000: 1s. Last read position: chr9:114,270,129
INFO 2026-06-08 08:23:49 MarkDuplicates Tracking 776440 as yet unmatched pairs. 26089 records in RAM.
INFO 2026-06-08 08:23:51 MarkDuplicates Read 229,000,000 records. Elapsed time: 00:06:29s. Time for last 1,000,000: 1s. Last read position: chr9:123,792,618
INFO 2026-06-08 08:23:51 MarkDuplicates Tracking 773343 as yet unmatched pairs. 22973 records in RAM.
INFO 2026-06-08 08:23:53 MarkDuplicates Read 230,000,000 records. Elapsed time: 00:06:31s. Time for last 1,000,000: 1s. Last read position: chr9:128,166,232
INFO 2026-06-08 08:23:53 MarkDuplicates Tracking 770381 as yet unmatched pairs. 19972 records in RAM.
INFO 2026-06-08 08:23:55 MarkDuplicates Read 231,000,000 records. Elapsed time: 00:06:33s. Time for last 1,000,000: 1s. Last read position: chr9:129,147,410
INFO 2026-06-08 08:23:55 MarkDuplicates Tracking 767240 as yet unmatched pairs. 16818 records in RAM.
INFO 2026-06-08 08:23:57 MarkDuplicates Read 232,000,000 records. Elapsed time: 00:06:35s. Time for last 1,000,000: 1s. Last read position: chr9:131,476,061
INFO 2026-06-08 08:23:57 MarkDuplicates Tracking 764475 as yet unmatched pairs. 14033 records in RAM.
INFO 2026-06-08 08:23:58 MarkDuplicates Read 233,000,000 records. Elapsed time: 00:06:37s. Time for last 1,000,000: 1s. Last read position: chr9:133,812,203
INFO 2026-06-08 08:23:58 MarkDuplicates Tracking 761322 as yet unmatched pairs. 10859 records in RAM.
INFO 2026-06-08 08:24:00 MarkDuplicates Read 234,000,000 records. Elapsed time: 00:06:38s. Time for last 1,000,000: 1s. Last read position: chr9:136,465,981
INFO 2026-06-08 08:24:00 MarkDuplicates Tracking 757813 as yet unmatched pairs. 7327 records in RAM.
INFO 2026-06-08 08:24:02 MarkDuplicates Read 235,000,000 records. Elapsed time: 00:06:40s. Time for last 1,000,000: 2s. Last read position: chr9:136,993,588
INFO 2026-06-08 08:24:02 MarkDuplicates Tracking 754389 as yet unmatched pairs. 3863 records in RAM.
INFO 2026-06-08 08:24:05 MarkDuplicates Read 236,000,000 records. Elapsed time: 00:06:43s. Time for last 1,000,000: 2s. Last read position: chr10:179,993
INFO 2026-06-08 08:24:05 MarkDuplicates Tracking 750558 as yet unmatched pairs. 32049 records in RAM.
INFO 2026-06-08 08:24:06 MarkDuplicates Read 237,000,000 records. Elapsed time: 00:06:45s. Time for last 1,000,000: 1s. Last read position: chr10:23,439,529
INFO 2026-06-08 08:24:06 MarkDuplicates Tracking 747633 as yet unmatched pairs. 29090 records in RAM.
INFO 2026-06-08 08:24:08 MarkDuplicates Read 238,000,000 records. Elapsed time: 00:06:46s. Time for last 1,000,000: 1s. Last read position: chr10:32,028,488
INFO 2026-06-08 08:24:08 MarkDuplicates Tracking 745581 as yet unmatched pairs. 27027 records in RAM.
INFO 2026-06-08 08:24:10 MarkDuplicates Read 239,000,000 records. Elapsed time: 00:06:48s. Time for last 1,000,000: 2s. Last read position: chr10:46,015,140
INFO 2026-06-08 08:24:10 MarkDuplicates Tracking 742791 as yet unmatched pairs. 24207 records in RAM.
INFO 2026-06-08 08:24:12 MarkDuplicates Read 240,000,000 records. Elapsed time: 00:06:50s. Time for last 1,000,000: 1s. Last read position: chr10:68,338,531
INFO 2026-06-08 08:24:12 MarkDuplicates Tracking 740090 as yet unmatched pairs. 21488 records in RAM.
INFO 2026-06-08 08:24:14 MarkDuplicates Read 241,000,000 records. Elapsed time: 00:06:52s. Time for last 1,000,000: 1s. Last read position: chr10:75,398,726
INFO 2026-06-08 08:24:14 MarkDuplicates Tracking 737168 as yet unmatched pairs. 18530 records in RAM.
INFO 2026-06-08 08:24:16 MarkDuplicates Read 242,000,000 records. Elapsed time: 00:06:54s. Time for last 1,000,000: 1s. Last read position: chr10:87,232,596
INFO 2026-06-08 08:24:16 MarkDuplicates Tracking 734333 as yet unmatched pairs. 15676 records in RAM.
INFO 2026-06-08 08:24:18 MarkDuplicates Read 243,000,000 records. Elapsed time: 00:06:56s. Time for last 1,000,000: 2s. Last read position: chr10:96,958,340
INFO 2026-06-08 08:24:18 MarkDuplicates Tracking 731563 as yet unmatched pairs. 12880 records in RAM.
INFO 2026-06-08 08:24:20 MarkDuplicates Read 244,000,000 records. Elapsed time: 00:06:58s. Time for last 1,000,000: 1s. Last read position: chr10:102,140,219
INFO 2026-06-08 08:24:20 MarkDuplicates Tracking 728644 as yet unmatched pairs. 9939 records in RAM.
INFO 2026-06-08 08:24:21 MarkDuplicates Read 245,000,000 records. Elapsed time: 00:06:59s. Time for last 1,000,000: 1s. Last read position: chr10:110,116,270
INFO 2026-06-08 08:24:21 MarkDuplicates Tracking 725592 as yet unmatched pairs. 6860 records in RAM.
INFO 2026-06-08 08:24:23 MarkDuplicates Read 246,000,000 records. Elapsed time: 00:07:01s. Time for last 1,000,000: 1s. Last read position: chr10:119,174,570
INFO 2026-06-08 08:24:23 MarkDuplicates Tracking 722844 as yet unmatched pairs. 4087 records in RAM.
INFO 2026-06-08 08:24:25 MarkDuplicates Read 247,000,000 records. Elapsed time: 00:07:03s. Time for last 1,000,000: 1s. Last read position: chr10:129,707,943
INFO 2026-06-08 08:24:25 MarkDuplicates Tracking 720193 as yet unmatched pairs. 1403 records in RAM.
INFO 2026-06-08 08:24:28 MarkDuplicates Read 248,000,000 records. Elapsed time: 00:07:06s. Time for last 1,000,000: 2s. Last read position: chr11:320,611
INFO 2026-06-08 08:24:28 MarkDuplicates Tracking 718688 as yet unmatched pairs. 75571 records in RAM.
INFO 2026-06-08 08:24:29 MarkDuplicates Read 249,000,000 records. Elapsed time: 00:07:08s. Time for last 1,000,000: 1s. Last read position: chr11:720,868
INFO 2026-06-08 08:24:29 MarkDuplicates Tracking 713645 as yet unmatched pairs. 70513 records in RAM.
INFO 2026-06-08 08:24:31 MarkDuplicates Read 250,000,000 records. Elapsed time: 00:07:09s. Time for last 1,000,000: 1s. Last read position: chr11:1,244,872
INFO 2026-06-08 08:24:31 MarkDuplicates Tracking 710356 as yet unmatched pairs. 67199 records in RAM.
INFO 2026-06-08 08:24:33 MarkDuplicates Read 251,000,000 records. Elapsed time: 00:07:11s. Time for last 1,000,000: 1s. Last read position: chr11:2,390,430
INFO 2026-06-08 08:24:33 MarkDuplicates Tracking 708022 as yet unmatched pairs. 64855 records in RAM.
INFO 2026-06-08 08:24:35 MarkDuplicates Read 252,000,000 records. Elapsed time: 00:07:13s. Time for last 1,000,000: 1s. Last read position: chr11:7,649,147
INFO 2026-06-08 08:24:35 MarkDuplicates Tracking 704133 as yet unmatched pairs. 60944 records in RAM.
INFO 2026-06-08 08:24:37 MarkDuplicates Read 253,000,000 records. Elapsed time: 00:07:15s. Time for last 1,000,000: 1s. Last read position: chr11:16,789,208
INFO 2026-06-08 08:24:37 MarkDuplicates Tracking 701285 as yet unmatched pairs. 58070 records in RAM.
INFO 2026-06-08 08:24:39 MarkDuplicates Read 254,000,000 records. Elapsed time: 00:07:17s. Time for last 1,000,000: 1s. Last read position: chr11:34,658,545
INFO 2026-06-08 08:24:39 MarkDuplicates Tracking 698440 as yet unmatched pairs. 55200 records in RAM.
INFO 2026-06-08 08:24:41 MarkDuplicates Read 255,000,000 records. Elapsed time: 00:07:19s. Time for last 1,000,000: 2s. Last read position: chr11:46,778,290
INFO 2026-06-08 08:24:41 MarkDuplicates Tracking 695420 as yet unmatched pairs. 52166 records in RAM.
INFO 2026-06-08 08:24:43 MarkDuplicates Read 256,000,000 records. Elapsed time: 00:07:21s. Time for last 1,000,000: 1s. Last read position: chr11:57,802,130
INFO 2026-06-08 08:24:43 MarkDuplicates Tracking 692555 as yet unmatched pairs. 49290 records in RAM.
INFO 2026-06-08 08:24:44 MarkDuplicates Read 257,000,000 records. Elapsed time: 00:07:22s. Time for last 1,000,000: 1s. Last read position: chr11:62,129,912
INFO 2026-06-08 08:24:44 MarkDuplicates Tracking 689432 as yet unmatched pairs. 46131 records in RAM.
INFO 2026-06-08 08:24:47 MarkDuplicates Read 258,000,000 records. Elapsed time: 00:07:25s. Time for last 1,000,000: 2s. Last read position: chr11:62,567,498
INFO 2026-06-08 08:24:47 MarkDuplicates Tracking 687366 as yet unmatched pairs. 44056 records in RAM.
INFO 2026-06-08 08:24:49 MarkDuplicates Read 259,000,000 records. Elapsed time: 00:07:27s. Time for last 1,000,000: 2s. Last read position: chr11:63,976,228
INFO 2026-06-08 08:24:49 MarkDuplicates Tracking 683772 as yet unmatched pairs. 40449 records in RAM.
INFO 2026-06-08 08:24:51 MarkDuplicates Read 260,000,000 records. Elapsed time: 00:07:29s. Time for last 1,000,000: 2s. Last read position: chr11:64,767,817
INFO 2026-06-08 08:24:51 MarkDuplicates Tracking 680100 as yet unmatched pairs. 36767 records in RAM.
INFO 2026-06-08 08:24:53 MarkDuplicates Read 261,000,000 records. Elapsed time: 00:07:31s. Time for last 1,000,000: 1s. Last read position: chr11:65,539,811
INFO 2026-06-08 08:24:53 MarkDuplicates Tracking 676554 as yet unmatched pairs. 33185 records in RAM.
INFO 2026-06-08 08:24:55 MarkDuplicates Read 262,000,000 records. Elapsed time: 00:07:33s. Time for last 1,000,000: 1s. Last read position: chr11:65,868,300
INFO 2026-06-08 08:24:55 MarkDuplicates Tracking 673054 as yet unmatched pairs. 29670 records in RAM.
INFO 2026-06-08 08:24:56 MarkDuplicates Read 263,000,000 records. Elapsed time: 00:07:34s. Time for last 1,000,000: 1s. Last read position: chr11:67,266,758
INFO 2026-06-08 08:24:56 MarkDuplicates Tracking 669908 as yet unmatched pairs. 26503 records in RAM.
INFO 2026-06-08 08:24:58 MarkDuplicates Read 264,000,000 records. Elapsed time: 00:07:37s. Time for last 1,000,000: 2s. Last read position: chr11:68,436,937
INFO 2026-06-08 08:24:58 MarkDuplicates Tracking 666111 as yet unmatched pairs. 22692 records in RAM.
INFO 2026-06-08 08:25:00 MarkDuplicates Read 265,000,000 records. Elapsed time: 00:07:39s. Time for last 1,000,000: 2s. Last read position: chr11:72,003,472
INFO 2026-06-08 08:25:00 MarkDuplicates Tracking 663920 as yet unmatched pairs. 20483 records in RAM.
INFO 2026-06-08 08:25:02 MarkDuplicates Read 266,000,000 records. Elapsed time: 00:07:40s. Time for last 1,000,000: 1s. Last read position: chr11:74,834,723
INFO 2026-06-08 08:25:02 MarkDuplicates Tracking 659769 as yet unmatched pairs. 16307 records in RAM.
INFO 2026-06-08 08:25:04 MarkDuplicates Read 267,000,000 records. Elapsed time: 00:07:42s. Time for last 1,000,000: 1s. Last read position: chr11:85,663,902
INFO 2026-06-08 08:25:04 MarkDuplicates Tracking 656739 as yet unmatched pairs. 13259 records in RAM.
INFO 2026-06-08 08:25:06 MarkDuplicates Read 268,000,000 records. Elapsed time: 00:07:44s. Time for last 1,000,000: 1s. Last read position: chr11:108,121,615
INFO 2026-06-08 08:25:06 MarkDuplicates Tracking 653671 as yet unmatched pairs. 10169 records in RAM.
INFO 2026-06-08 08:25:08 MarkDuplicates Read 269,000,000 records. Elapsed time: 00:07:46s. Time for last 1,000,000: 2s. Last read position: chr11:118,495,781
INFO 2026-06-08 08:25:08 MarkDuplicates Tracking 650894 as yet unmatched pairs. 7374 records in RAM.
INFO 2026-06-08 08:25:10 MarkDuplicates Read 270,000,000 records. Elapsed time: 00:07:48s. Time for last 1,000,000: 2s. Last read position: chr11:121,055,262
INFO 2026-06-08 08:25:10 MarkDuplicates Tracking 647699 as yet unmatched pairs. 4164 records in RAM.
INFO 2026-06-08 08:25:12 MarkDuplicates Read 271,000,000 records. Elapsed time: 00:07:50s. Time for last 1,000,000: 1s. Last read position: chr11:130,129,131
INFO 2026-06-08 08:25:12 MarkDuplicates Tracking 644936 as yet unmatched pairs. 1384 records in RAM.
INFO 2026-06-08 08:25:15 MarkDuplicates Read 272,000,000 records. Elapsed time: 00:07:53s. Time for last 1,000,000: 2s. Last read position: chr12:3,019,140
INFO 2026-06-08 08:25:15 MarkDuplicates Tracking 641981 as yet unmatched pairs. 60867 records in RAM.
INFO 2026-06-08 08:25:17 MarkDuplicates Read 273,000,000 records. Elapsed time: 00:07:55s. Time for last 1,000,000: 2s. Last read position: chr12:6,606,276
INFO 2026-06-08 08:25:17 MarkDuplicates Tracking 639117 as yet unmatched pairs. 57985 records in RAM.
INFO 2026-06-08 08:25:19 MarkDuplicates Read 274,000,000 records. Elapsed time: 00:07:57s. Time for last 1,000,000: 1s. Last read position: chr12:9,072,689
INFO 2026-06-08 08:25:19 MarkDuplicates Tracking 635879 as yet unmatched pairs. 54721 records in RAM.
INFO 2026-06-08 08:25:21 MarkDuplicates Read 275,000,000 records. Elapsed time: 00:07:59s. Time for last 1,000,000: 1s. Last read position: chr12:15,631,561
INFO 2026-06-08 08:25:21 MarkDuplicates Tracking 633164 as yet unmatched pairs. 51987 records in RAM.
INFO 2026-06-08 08:25:22 MarkDuplicates Read 276,000,000 records. Elapsed time: 00:08:01s. Time for last 1,000,000: 1s. Last read position: chr12:47,784,718
INFO 2026-06-08 08:25:22 MarkDuplicates Tracking 630253 as yet unmatched pairs. 49048 records in RAM.
INFO 2026-06-08 08:25:24 MarkDuplicates Read 277,000,000 records. Elapsed time: 00:08:02s. Time for last 1,000,000: 1s. Last read position: chr12:49,128,033
INFO 2026-06-08 08:25:24 MarkDuplicates Tracking 627621 as yet unmatched pairs. 46403 records in RAM.
INFO 2026-06-08 08:25:26 MarkDuplicates Read 278,000,000 records. Elapsed time: 00:08:04s. Time for last 1,000,000: 1s. Last read position: chr12:51,951,755
INFO 2026-06-08 08:25:26 MarkDuplicates Tracking 624713 as yet unmatched pairs. 43464 records in RAM.
INFO 2026-06-08 08:25:28 MarkDuplicates Read 279,000,000 records. Elapsed time: 00:08:06s. Time for last 1,000,000: 1s. Last read position: chr12:53,037,473
INFO 2026-06-08 08:25:28 MarkDuplicates Tracking 621532 as yet unmatched pairs. 40273 records in RAM.
INFO 2026-06-08 08:25:30 MarkDuplicates Read 280,000,000 records. Elapsed time: 00:08:08s. Time for last 1,000,000: 1s. Last read position: chr12:54,283,820
INFO 2026-06-08 08:25:30 MarkDuplicates Tracking 619790 as yet unmatched pairs. 38526 records in RAM.
INFO 2026-06-08 08:25:32 MarkDuplicates Read 281,000,000 records. Elapsed time: 00:08:10s. Time for last 1,000,000: 1s. Last read position: chr12:56,160,097
INFO 2026-06-08 08:25:32 MarkDuplicates Tracking 616964 as yet unmatched pairs. 35688 records in RAM.
INFO 2026-06-08 08:26:35 MarkDuplicates Read 282,000,000 records. Elapsed time: 00:09:13s. Time for last 1,000,000: 63s. Last read position: chr12:57,003,080
INFO 2026-06-08 08:26:35 MarkDuplicates Tracking 613476 as yet unmatched pairs. 32193 records in RAM.
INFO 2026-06-08 08:26:37 MarkDuplicates Read 283,000,000 records. Elapsed time: 00:09:15s. Time for last 1,000,000: 2s. Last read position: chr12:57,158,402
INFO 2026-06-08 08:26:37 MarkDuplicates Tracking 610947 as yet unmatched pairs. 29654 records in RAM.
INFO 2026-06-08 08:26:39 MarkDuplicates Read 284,000,000 records. Elapsed time: 00:09:17s. Time for last 1,000,000: 1s. Last read position: chr12:57,524,340
INFO 2026-06-08 08:26:39 MarkDuplicates Tracking 607551 as yet unmatched pairs. 26235 records in RAM.
INFO 2026-06-08 08:26:41 MarkDuplicates Read 285,000,000 records. Elapsed time: 00:09:19s. Time for last 1,000,000: 1s. Last read position: chr12:69,597,167
INFO 2026-06-08 08:26:41 MarkDuplicates Tracking 604762 as yet unmatched pairs. 23423 records in RAM.
INFO 2026-06-08 08:26:43 MarkDuplicates Read 286,000,000 records. Elapsed time: 00:09:21s. Time for last 1,000,000: 1s. Last read position: chr12:94,424,785
INFO 2026-06-08 08:26:43 MarkDuplicates Tracking 601953 as yet unmatched pairs. 20587 records in RAM.
INFO 2026-06-08 08:26:45 MarkDuplicates Read 287,000,000 records. Elapsed time: 00:09:23s. Time for last 1,000,000: 1s. Last read position: chr12:109,057,969
INFO 2026-06-08 08:26:45 MarkDuplicates Tracking 599137 as yet unmatched pairs. 17753 records in RAM.
INFO 2026-06-08 08:26:47 MarkDuplicates Read 288,000,000 records. Elapsed time: 00:09:25s. Time for last 1,000,000: 1s. Last read position: chr12:112,477,651
INFO 2026-06-08 08:26:47 MarkDuplicates Tracking 596138 as yet unmatched pairs. 14723 records in RAM.
INFO 2026-06-08 08:26:48 MarkDuplicates Read 289,000,000 records. Elapsed time: 00:09:26s. Time for last 1,000,000: 1s. Last read position: chr12:120,178,709
INFO 2026-06-08 08:26:48 MarkDuplicates Tracking 593300 as yet unmatched pairs. 11854 records in RAM.
INFO 2026-06-08 08:26:50 MarkDuplicates Read 290,000,000 records. Elapsed time: 00:09:28s. Time for last 1,000,000: 1s. Last read position: chr12:122,133,464
INFO 2026-06-08 08:26:50 MarkDuplicates Tracking 591202 as yet unmatched pairs. 9736 records in RAM.
INFO 2026-06-08 08:26:52 MarkDuplicates Read 291,000,000 records. Elapsed time: 00:09:30s. Time for last 1,000,000: 1s. Last read position: chr12:124,343,134
INFO 2026-06-08 08:26:52 MarkDuplicates Tracking 587397 as yet unmatched pairs. 5902 records in RAM.
INFO 2026-06-08 08:26:54 MarkDuplicates Read 292,000,000 records. Elapsed time: 00:09:32s. Time for last 1,000,000: 1s. Last read position: chr12:132,067,393
INFO 2026-06-08 08:26:54 MarkDuplicates Tracking 583901 as yet unmatched pairs. 2385 records in RAM.
INFO 2026-06-08 08:26:55 MarkDuplicates Read 293,000,000 records. Elapsed time: 00:09:33s. Time for last 1,000,000: 1s. Last read position: chr13:24,223,030
INFO 2026-06-08 08:26:55 MarkDuplicates Tracking 580710 as yet unmatched pairs. 14433 records in RAM.
INFO 2026-06-08 08:26:57 MarkDuplicates Read 294,000,000 records. Elapsed time: 00:09:35s. Time for last 1,000,000: 1s. Last read position: chr13:39,014,041
INFO 2026-06-08 08:26:57 MarkDuplicates Tracking 578030 as yet unmatched pairs. 11731 records in RAM.
INFO 2026-06-08 08:26:59 MarkDuplicates Read 295,000,000 records. Elapsed time: 00:09:37s. Time for last 1,000,000: 1s. Last read position: chr13:53,028,844
INFO 2026-06-08 08:26:59 MarkDuplicates Tracking 575015 as yet unmatched pairs. 8691 records in RAM.
INFO 2026-06-08 08:27:01 MarkDuplicates Read 296,000,000 records. Elapsed time: 00:09:39s. Time for last 1,000,000: 1s. Last read position: chr13:99,290,672
INFO 2026-06-08 08:27:01 MarkDuplicates Tracking 571907 as yet unmatched pairs. 5562 records in RAM.
INFO 2026-06-08 08:27:02 MarkDuplicates Read 297,000,000 records. Elapsed time: 00:09:40s. Time for last 1,000,000: 1s. Last read position: chr13:110,508,062
INFO 2026-06-08 08:27:02 MarkDuplicates Tracking 568766 as yet unmatched pairs. 2408 records in RAM.
INFO 2026-06-08 08:27:05 MarkDuplicates Read 298,000,000 records. Elapsed time: 00:09:43s. Time for last 1,000,000: 2s. Last read position: chr14:21,092,590
INFO 2026-06-08 08:27:05 MarkDuplicates Tracking 565694 as yet unmatched pairs. 38777 records in RAM.
INFO 2026-06-08 08:27:07 MarkDuplicates Read 299,000,000 records. Elapsed time: 00:09:45s. Time for last 1,000,000: 1s. Last read position: chr14:23,523,288
INFO 2026-06-08 08:27:07 MarkDuplicates Tracking 562145 as yet unmatched pairs. 35219 records in RAM.
INFO 2026-06-08 08:27:08 MarkDuplicates Read 300,000,000 records. Elapsed time: 00:09:46s. Time for last 1,000,000: 1s. Last read position: chr14:30,950,882
INFO 2026-06-08 08:27:08 MarkDuplicates Tracking 559108 as yet unmatched pairs. 32167 records in RAM.
INFO 2026-06-08 08:27:10 MarkDuplicates Read 301,000,000 records. Elapsed time: 00:09:48s. Time for last 1,000,000: 1s. Last read position: chr14:52,060,261
INFO 2026-06-08 08:27:10 MarkDuplicates Tracking 556625 as yet unmatched pairs. 29613 records in RAM.
INFO 2026-06-08 08:27:12 MarkDuplicates Read 302,000,000 records. Elapsed time: 00:09:50s. Time for last 1,000,000: 1s. Last read position: chr14:64,209,513
INFO 2026-06-08 08:27:12 MarkDuplicates Tracking 553785 as yet unmatched pairs. 26756 records in RAM.
INFO 2026-06-08 08:27:13 MarkDuplicates Read 303,000,000 records. Elapsed time: 00:09:52s. Time for last 1,000,000: 1s. Last read position: chr14:69,236,044
INFO 2026-06-08 08:27:13 MarkDuplicates Tracking 550588 as yet unmatched pairs. 23548 records in RAM.
INFO 2026-06-08 08:27:15 MarkDuplicates Read 304,000,000 records. Elapsed time: 00:09:53s. Time for last 1,000,000: 1s. Last read position: chr14:75,278,930
INFO 2026-06-08 08:27:15 MarkDuplicates Tracking 547958 as yet unmatched pairs. 20903 records in RAM.
INFO 2026-06-08 08:27:17 MarkDuplicates Read 305,000,000 records. Elapsed time: 00:09:55s. Time for last 1,000,000: 1s. Last read position: chr14:91,787,529
INFO 2026-06-08 08:27:17 MarkDuplicates Tracking 544780 as yet unmatched pairs. 17708 records in RAM.
INFO 2026-06-08 08:27:18 MarkDuplicates Read 306,000,000 records. Elapsed time: 00:09:57s. Time for last 1,000,000: 1s. Last read position: chr14:102,005,905
INFO 2026-06-08 08:27:18 MarkDuplicates Tracking 541802 as yet unmatched pairs. 14689 records in RAM.
INFO 2026-06-08 08:27:20 MarkDuplicates Read 307,000,000 records. Elapsed time: 00:09:58s. Time for last 1,000,000: 1s. Last read position: chr14:103,679,422
INFO 2026-06-08 08:27:20 MarkDuplicates Tracking 538304 as yet unmatched pairs. 11188 records in RAM.
INFO 2026-06-08 08:27:22 MarkDuplicates Read 308,000,000 records. Elapsed time: 00:10:00s. Time for last 1,000,000: 1s. Last read position: chr14:105,369,864
INFO 2026-06-08 08:27:22 MarkDuplicates Tracking 534980 as yet unmatched pairs. 7853 records in RAM.
INFO 2026-06-08 08:27:23 MarkDuplicates Read 309,000,000 records. Elapsed time: 00:10:02s. Time for last 1,000,000: 1s. Last read position: chr14:105,643,229
INFO 2026-06-08 08:27:23 MarkDuplicates Tracking 533285 as yet unmatched pairs. 6152 records in RAM.
INFO 2026-06-08 08:27:25 MarkDuplicates Read 310,000,000 records. Elapsed time: 00:10:03s. Time for last 1,000,000: 1s. Last read position: chr14:105,707,366
INFO 2026-06-08 08:27:25 MarkDuplicates Tracking 537803 as yet unmatched pairs. 10656 records in RAM.
INFO 2026-06-08 08:27:27 MarkDuplicates Read 311,000,000 records. Elapsed time: 00:10:05s. Time for last 1,000,000: 1s. Last read position: chr14:105,771,306
INFO 2026-06-08 08:27:27 MarkDuplicates Tracking 527649 as yet unmatched pairs. 492 records in RAM.
INFO 2026-06-08 08:27:28 MarkDuplicates Read 312,000,000 records. Elapsed time: 00:10:07s. Time for last 1,000,000: 1s. Last read position: chr15:32,603,802
INFO 2026-06-08 08:27:28 MarkDuplicates Tracking 525343 as yet unmatched pairs. 30272 records in RAM.
INFO 2026-06-08 08:27:30 MarkDuplicates Read 313,000,000 records. Elapsed time: 00:10:08s. Time for last 1,000,000: 1s. Last read position: chr15:40,459,622
INFO 2026-06-08 08:27:30 MarkDuplicates Tracking 522564 as yet unmatched pairs. 27476 records in RAM.
INFO 2026-06-08 08:27:31 MarkDuplicates Read 314,000,000 records. Elapsed time: 00:10:10s. Time for last 1,000,000: 1s. Last read position: chr15:43,189,231
INFO 2026-06-08 08:27:31 MarkDuplicates Tracking 519627 as yet unmatched pairs. 24518 records in RAM.
INFO 2026-06-08 08:27:33 MarkDuplicates Read 315,000,000 records. Elapsed time: 00:10:11s. Time for last 1,000,000: 1s. Last read position: chr15:48,334,415
INFO 2026-06-08 08:27:33 MarkDuplicates Tracking 516981 as yet unmatched pairs. 21862 records in RAM.
INFO 2026-06-08 08:27:35 MarkDuplicates Read 316,000,000 records. Elapsed time: 00:10:13s. Time for last 1,000,000: 1s. Last read position: chr15:60,357,204
INFO 2026-06-08 08:27:35 MarkDuplicates Tracking 514274 as yet unmatched pairs. 19144 records in RAM.
INFO 2026-06-08 08:27:37 MarkDuplicates Read 317,000,000 records. Elapsed time: 00:10:15s. Time for last 1,000,000: 1s. Last read position: chr15:66,495,404
INFO 2026-06-08 08:27:37 MarkDuplicates Tracking 511052 as yet unmatched pairs. 15904 records in RAM.
INFO 2026-06-08 08:27:38 MarkDuplicates Read 318,000,000 records. Elapsed time: 00:10:16s. Time for last 1,000,000: 1s. Last read position: chr15:73,570,151
INFO 2026-06-08 08:27:38 MarkDuplicates Tracking 508262 as yet unmatched pairs. 13095 records in RAM.
INFO 2026-06-08 08:27:40 MarkDuplicates Read 319,000,000 records. Elapsed time: 00:10:18s. Time for last 1,000,000: 1s. Last read position: chr15:75,360,600
INFO 2026-06-08 08:27:40 MarkDuplicates Tracking 504910 as yet unmatched pairs. 9737 records in RAM.
INFO 2026-06-08 08:27:42 MarkDuplicates Read 320,000,000 records. Elapsed time: 00:10:20s. Time for last 1,000,000: 1s. Last read position: chr15:82,372,295
INFO 2026-06-08 08:27:42 MarkDuplicates Tracking 501669 as yet unmatched pairs. 6483 records in RAM.
INFO 2026-06-08 08:27:43 MarkDuplicates Read 321,000,000 records. Elapsed time: 00:10:21s. Time for last 1,000,000: 1s. Last read position: chr15:89,683,873
INFO 2026-06-08 08:27:43 MarkDuplicates Tracking 499447 as yet unmatched pairs. 4241 records in RAM.
INFO 2026-06-08 08:27:45 MarkDuplicates Read 322,000,000 records. Elapsed time: 00:10:23s. Time for last 1,000,000: 1s. Last read position: chr15:99,130,379
INFO 2026-06-08 08:27:45 MarkDuplicates Tracking 496381 as yet unmatched pairs. 1159 records in RAM.
INFO 2026-06-08 08:27:47 MarkDuplicates Read 323,000,000 records. Elapsed time: 00:10:25s. Time for last 1,000,000: 2s. Last read position: chr16:551,637
INFO 2026-06-08 08:27:47 MarkDuplicates Tracking 493075 as yet unmatched pairs. 80809 records in RAM.
INFO 2026-06-08 08:27:49 MarkDuplicates Read 324,000,000 records. Elapsed time: 00:10:27s. Time for last 1,000,000: 1s. Last read position: chr16:1,764,043
INFO 2026-06-08 08:27:49 MarkDuplicates Tracking 489591 as yet unmatched pairs. 77317 records in RAM.
INFO 2026-06-08 08:27:51 MarkDuplicates Read 325,000,000 records. Elapsed time: 00:10:29s. Time for last 1,000,000: 1s. Last read position: chr16:2,110,974
INFO 2026-06-08 08:27:51 MarkDuplicates Tracking 485689 as yet unmatched pairs. 73406 records in RAM.
INFO 2026-06-08 08:27:52 MarkDuplicates Read 326,000,000 records. Elapsed time: 00:10:30s. Time for last 1,000,000: 1s. Last read position: chr16:2,763,266
INFO 2026-06-08 08:27:52 MarkDuplicates Tracking 482817 as yet unmatched pairs. 70527 records in RAM.
INFO 2026-06-08 08:27:54 MarkDuplicates Read 327,000,000 records. Elapsed time: 00:10:32s. Time for last 1,000,000: 1s. Last read position: chr16:3,232,437
INFO 2026-06-08 08:27:54 MarkDuplicates Tracking 479302 as yet unmatched pairs. 67008 records in RAM.
INFO 2026-06-08 08:27:56 MarkDuplicates Read 328,000,000 records. Elapsed time: 00:10:34s. Time for last 1,000,000: 1s. Last read position: chr16:4,688,823
INFO 2026-06-08 08:27:56 MarkDuplicates Tracking 476850 as yet unmatched pairs. 64546 records in RAM.
INFO 2026-06-08 08:27:57 MarkDuplicates Read 329,000,000 records. Elapsed time: 00:10:35s. Time for last 1,000,000: 1s. Last read position: chr16:11,886,597
INFO 2026-06-08 08:27:57 MarkDuplicates Tracking 472835 as yet unmatched pairs. 60516 records in RAM.
INFO 2026-06-08 08:27:59 MarkDuplicates Read 330,000,000 records. Elapsed time: 00:10:37s. Time for last 1,000,000: 1s. Last read position: chr16:15,033,342
INFO 2026-06-08 08:27:59 MarkDuplicates Tracking 471473 as yet unmatched pairs. 59150 records in RAM.
INFO 2026-06-08 08:28:00 MarkDuplicates Read 331,000,000 records. Elapsed time: 00:10:38s. Time for last 1,000,000: 1s. Last read position: chr16:15,838,013
INFO 2026-06-08 08:28:00 MarkDuplicates Tracking 468903 as yet unmatched pairs. 56574 records in RAM.
INFO 2026-06-08 08:28:01 MarkDuplicates Read 332,000,000 records. Elapsed time: 00:10:40s. Time for last 1,000,000: 1s. Last read position: chr16:16,363,156
INFO 2026-06-08 08:28:01 MarkDuplicates Tracking 467617 as yet unmatched pairs. 55282 records in RAM.
INFO 2026-06-08 08:28:03 MarkDuplicates Read 333,000,000 records. Elapsed time: 00:10:41s. Time for last 1,000,000: 1s. Last read position: chr16:18,395,927
INFO 2026-06-08 08:28:03 MarkDuplicates Tracking 466296 as yet unmatched pairs. 53959 records in RAM.
INFO 2026-06-08 08:28:04 MarkDuplicates Read 334,000,000 records. Elapsed time: 00:10:43s. Time for last 1,000,000: 1s. Last read position: chr16:21,405,001
INFO 2026-06-08 08:28:04 MarkDuplicates Tracking 464521 as yet unmatched pairs. 52180 records in RAM.
INFO 2026-06-08 08:28:06 MarkDuplicates Read 335,000,000 records. Elapsed time: 00:10:44s. Time for last 1,000,000: 1s. Last read position: chr16:22,325,993
INFO 2026-06-08 08:28:06 MarkDuplicates Tracking 463325 as yet unmatched pairs. 50977 records in RAM.
INFO 2026-06-08 08:28:07 MarkDuplicates Read 336,000,000 records. Elapsed time: 00:10:45s. Time for last 1,000,000: 1s. Last read position: chr16:24,931,209
INFO 2026-06-08 08:28:07 MarkDuplicates Tracking 461897 as yet unmatched pairs. 49545 records in RAM.
INFO 2026-06-08 08:28:09 MarkDuplicates Read 337,000,000 records. Elapsed time: 00:10:47s. Time for last 1,000,000: 1s. Last read position: chr16:28,823,231
INFO 2026-06-08 08:28:09 MarkDuplicates Tracking 459706 as yet unmatched pairs. 47346 records in RAM.
INFO 2026-06-08 08:28:10 MarkDuplicates Read 338,000,000 records. Elapsed time: 00:10:48s. Time for last 1,000,000: 1s. Last read position: chr16:29,453,689
INFO 2026-06-08 08:28:10 MarkDuplicates Tracking 457977 as yet unmatched pairs. 45611 records in RAM.
INFO 2026-06-08 08:28:12 MarkDuplicates Read 339,000,000 records. Elapsed time: 00:10:50s. Time for last 1,000,000: 1s. Last read position: chr16:29,809,583
INFO 2026-06-08 08:28:12 MarkDuplicates Tracking 455242 as yet unmatched pairs. 42872 records in RAM.
INFO 2026-06-08 08:28:13 MarkDuplicates Read 340,000,000 records. Elapsed time: 00:10:51s. Time for last 1,000,000: 1s. Last read position: chr16:30,068,975
INFO 2026-06-08 08:28:13 MarkDuplicates Tracking 452487 as yet unmatched pairs. 40110 records in RAM.
INFO 2026-06-08 08:28:15 MarkDuplicates Read 341,000,000 records. Elapsed time: 00:10:53s. Time for last 1,000,000: 1s. Last read position: chr16:30,365,162
INFO 2026-06-08 08:28:15 MarkDuplicates Tracking 449309 as yet unmatched pairs. 36923 records in RAM.
INFO 2026-06-08 08:28:17 MarkDuplicates Read 342,000,000 records. Elapsed time: 00:10:55s. Time for last 1,000,000: 1s. Last read position: chr16:30,724,965
INFO 2026-06-08 08:28:17 MarkDuplicates Tracking 445990 as yet unmatched pairs. 33597 records in RAM.
INFO 2026-06-08 08:28:18 MarkDuplicates Read 343,000,000 records. Elapsed time: 00:10:56s. Time for last 1,000,000: 1s. Last read position: chr16:31,132,704
INFO 2026-06-08 08:28:18 MarkDuplicates Tracking 442952 as yet unmatched pairs. 30553 records in RAM.
INFO 2026-06-08 08:28:20 MarkDuplicates Read 344,000,000 records. Elapsed time: 00:10:58s. Time for last 1,000,000: 1s. Last read position: chr16:48,560,737
INFO 2026-06-08 08:28:20 MarkDuplicates Tracking 439763 as yet unmatched pairs. 27362 records in RAM.
INFO 2026-06-08 08:28:21 MarkDuplicates Read 345,000,000 records. Elapsed time: 00:10:59s. Time for last 1,000,000: 1s. Last read position: chr16:52,450,389
INFO 2026-06-08 08:28:21 MarkDuplicates Tracking 436619 as yet unmatched pairs. 24201 records in RAM.
INFO 2026-06-08 08:28:23 MarkDuplicates Read 346,000,000 records. Elapsed time: 00:11:01s. Time for last 1,000,000: 1s. Last read position: chr16:57,764,225
INFO 2026-06-08 08:28:23 MarkDuplicates Tracking 433330 as yet unmatched pairs. 20895 records in RAM.
INFO 2026-06-08 08:28:25 MarkDuplicates Read 347,000,000 records. Elapsed time: 00:11:03s. Time for last 1,000,000: 1s. Last read position: chr16:67,658,200
INFO 2026-06-08 08:28:25 MarkDuplicates Tracking 430087 as yet unmatched pairs. 17646 records in RAM.
INFO 2026-06-08 08:28:27 MarkDuplicates Read 348,000,000 records. Elapsed time: 00:11:05s. Time for last 1,000,000: 1s. Last read position: chr16:69,748,310
INFO 2026-06-08 08:28:27 MarkDuplicates Tracking 426819 as yet unmatched pairs. 14367 records in RAM.
INFO 2026-06-08 08:28:28 MarkDuplicates Read 349,000,000 records. Elapsed time: 00:11:06s. Time for last 1,000,000: 1s. Last read position: chr16:74,483,102
INFO 2026-06-08 08:28:28 MarkDuplicates Tracking 423912 as yet unmatched pairs. 11450 records in RAM.
INFO 2026-06-08 08:28:30 MarkDuplicates Read 350,000,000 records. Elapsed time: 00:11:08s. Time for last 1,000,000: 1s. Last read position: chr16:85,657,326
INFO 2026-06-08 08:28:30 MarkDuplicates Tracking 420713 as yet unmatched pairs. 8232 records in RAM.
INFO 2026-06-08 08:28:31 MarkDuplicates Read 351,000,000 records. Elapsed time: 00:11:09s. Time for last 1,000,000: 1s. Last read position: chr16:88,736,266
INFO 2026-06-08 08:28:31 MarkDuplicates Tracking 417260 as yet unmatched pairs. 4755 records in RAM.
INFO 2026-06-08 08:28:33 MarkDuplicates Read 352,000,000 records. Elapsed time: 00:11:11s. Time for last 1,000,000: 1s. Last read position: chr16:89,854,536
INFO 2026-06-08 08:28:33 MarkDuplicates Tracking 413465 as yet unmatched pairs. 942 records in RAM.
INFO 2026-06-08 08:28:36 MarkDuplicates Read 353,000,000 records. Elapsed time: 00:11:14s. Time for last 1,000,000: 2s. Last read position: chr17:2,042,961
INFO 2026-06-08 08:28:36 MarkDuplicates Tracking 410158 as yet unmatched pairs. 130478 records in RAM.
INFO 2026-06-08 08:28:37 MarkDuplicates Read 354,000,000 records. Elapsed time: 00:11:16s. Time for last 1,000,000: 1s. Last read position: chr17:4,948,263
INFO 2026-06-08 08:28:37 MarkDuplicates Tracking 407153 as yet unmatched pairs. 127469 records in RAM.
INFO 2026-06-08 08:28:39 MarkDuplicates Read 355,000,000 records. Elapsed time: 00:11:17s. Time for last 1,000,000: 1s. Last read position: chr17:7,513,533
INFO 2026-06-08 08:28:39 MarkDuplicates Tracking 403969 as yet unmatched pairs. 124282 records in RAM.
INFO 2026-06-08 08:28:41 MarkDuplicates Read 356,000,000 records. Elapsed time: 00:11:19s. Time for last 1,000,000: 1s. Last read position: chr17:16,070,226
INFO 2026-06-08 08:28:41 MarkDuplicates Tracking 400949 as yet unmatched pairs. 121255 records in RAM.
INFO 2026-06-08 08:28:43 MarkDuplicates Read 357,000,000 records. Elapsed time: 00:11:21s. Time for last 1,000,000: 1s. Last read position: chr17:19,386,330
INFO 2026-06-08 08:28:43 MarkDuplicates Tracking 398001 as yet unmatched pairs. 118297 records in RAM.
INFO 2026-06-08 08:28:44 MarkDuplicates Read 358,000,000 records. Elapsed time: 00:11:22s. Time for last 1,000,000: 1s. Last read position: chr17:28,749,195
INFO 2026-06-08 08:28:44 MarkDuplicates Tracking 395284 as yet unmatched pairs. 115576 records in RAM.
INFO 2026-06-08 08:28:46 MarkDuplicates Read 359,000,000 records. Elapsed time: 00:11:24s. Time for last 1,000,000: 1s. Last read position: chr17:32,876,822
INFO 2026-06-08 08:28:46 MarkDuplicates Tracking 392100 as yet unmatched pairs. 112382 records in RAM.
INFO 2026-06-08 08:28:47 MarkDuplicates Read 360,000,000 records. Elapsed time: 00:11:25s. Time for last 1,000,000: 1s. Last read position: chr17:38,257,021
INFO 2026-06-08 08:28:47 MarkDuplicates Tracking 389864 as yet unmatched pairs. 110140 records in RAM.
INFO 2026-06-08 08:28:49 MarkDuplicates Read 361,000,000 records. Elapsed time: 00:11:27s. Time for last 1,000,000: 1s. Last read position: chr17:39,700,280
INFO 2026-06-08 08:28:49 MarkDuplicates Tracking 388236 as yet unmatched pairs. 108491 records in RAM.
INFO 2026-06-08 08:28:51 MarkDuplicates Read 362,000,000 records. Elapsed time: 00:11:29s. Time for last 1,000,000: 1s. Last read position: chr17:39,746,845
INFO 2026-06-08 08:28:51 MarkDuplicates Tracking 383545 as yet unmatched pairs. 103794 records in RAM.
INFO 2026-06-08 08:28:52 MarkDuplicates Read 363,000,000 records. Elapsed time: 00:11:30s. Time for last 1,000,000: 1s. Last read position: chr17:41,764,783
INFO 2026-06-08 08:28:52 MarkDuplicates Tracking 380383 as yet unmatched pairs. 100621 records in RAM.
INFO 2026-06-08 08:28:54 MarkDuplicates Read 364,000,000 records. Elapsed time: 00:11:32s. Time for last 1,000,000: 1s. Last read position: chr17:42,856,388
INFO 2026-06-08 08:28:54 MarkDuplicates Tracking 376860 as yet unmatched pairs. 97088 records in RAM.
INFO 2026-06-08 08:28:55 MarkDuplicates Read 365,000,000 records. Elapsed time: 00:11:34s. Time for last 1,000,000: 1s. Last read position: chr17:44,350,688
INFO 2026-06-08 08:28:55 MarkDuplicates Tracking 373958 as yet unmatched pairs. 94182 records in RAM.
INFO 2026-06-08 08:28:57 MarkDuplicates Read 366,000,000 records. Elapsed time: 00:11:35s. Time for last 1,000,000: 1s. Last read position: chr17:47,424,242
INFO 2026-06-08 08:28:57 MarkDuplicates Tracking 371134 as yet unmatched pairs. 91356 records in RAM.
INFO 2026-06-08 08:28:59 MarkDuplicates Read 367,000,000 records. Elapsed time: 00:11:37s. Time for last 1,000,000: 1s. Last read position: chr17:50,185,087
INFO 2026-06-08 08:28:59 MarkDuplicates Tracking 367872 as yet unmatched pairs. 88084 records in RAM.
INFO 2026-06-08 08:29:00 MarkDuplicates Read 368,000,000 records. Elapsed time: 00:11:39s. Time for last 1,000,000: 1s. Last read position: chr17:50,186,879
INFO 2026-06-08 08:29:00 MarkDuplicates Tracking 380499 as yet unmatched pairs. 100701 records in RAM.
INFO 2026-06-08 08:29:02 MarkDuplicates Read 369,000,000 records. Elapsed time: 00:11:40s. Time for last 1,000,000: 1s. Last read position: chr17:50,187,939
INFO 2026-06-08 08:29:02 MarkDuplicates Tracking 373097 as yet unmatched pairs. 93286 records in RAM.
INFO 2026-06-08 08:29:04 MarkDuplicates Read 370,000,000 records. Elapsed time: 00:11:42s. Time for last 1,000,000: 1s. Last read position: chr17:50,188,765
INFO 2026-06-08 08:29:04 MarkDuplicates Tracking 370307 as yet unmatched pairs. 90486 records in RAM.
INFO 2026-06-08 08:29:06 MarkDuplicates Read 371,000,000 records. Elapsed time: 00:11:44s. Time for last 1,000,000: 1s. Last read position: chr17:50,189,464
INFO 2026-06-08 08:29:06 MarkDuplicates Tracking 366552 as yet unmatched pairs. 86719 records in RAM.
INFO 2026-06-08 08:29:07 MarkDuplicates Read 372,000,000 records. Elapsed time: 00:11:45s. Time for last 1,000,000: 1s. Last read position: chr17:50,190,040
INFO 2026-06-08 08:29:07 MarkDuplicates Tracking 374529 as yet unmatched pairs. 94695 records in RAM.
INFO 2026-06-08 08:29:09 MarkDuplicates Read 373,000,000 records. Elapsed time: 00:11:47s. Time for last 1,000,000: 1s. Last read position: chr17:50,191,427
INFO 2026-06-08 08:29:09 MarkDuplicates Tracking 366006 as yet unmatched pairs. 86169 records in RAM.
INFO 2026-06-08 08:29:11 MarkDuplicates Read 374,000,000 records. Elapsed time: 00:11:49s. Time for last 1,000,000: 1s. Last read position: chr17:50,192,829
INFO 2026-06-08 08:29:11 MarkDuplicates Tracking 359289 as yet unmatched pairs. 79447 records in RAM.
INFO 2026-06-08 08:29:13 MarkDuplicates Read 375,000,000 records. Elapsed time: 00:11:51s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,136
INFO 2026-06-08 08:29:13 MarkDuplicates Tracking 379343 as yet unmatched pairs. 99498 records in RAM.
INFO 2026-06-08 08:29:14 MarkDuplicates Read 376,000,000 records. Elapsed time: 00:11:52s. Time for last 1,000,000: 1s. Last read position: chr17:50,194,786
INFO 2026-06-08 08:29:14 MarkDuplicates Tracking 350921 as yet unmatched pairs. 71073 records in RAM.
INFO 2026-06-08 08:29:16 MarkDuplicates Read 377,000,000 records. Elapsed time: 00:11:54s. Time for last 1,000,000: 1s. Last read position: chr17:50,195,934
INFO 2026-06-08 08:29:16 MarkDuplicates Tracking 344186 as yet unmatched pairs. 64326 records in RAM.
INFO 2026-06-08 08:29:18 MarkDuplicates Read 378,000,000 records. Elapsed time: 00:11:56s. Time for last 1,000,000: 2s. Last read position: chr17:50,196,500
INFO 2026-06-08 08:29:18 MarkDuplicates Tracking 347188 as yet unmatched pairs. 67326 records in RAM.
INFO 2026-06-08 08:29:20 MarkDuplicates Read 379,000,000 records. Elapsed time: 00:11:58s. Time for last 1,000,000: 1s. Last read position: chr17:50,197,761
INFO 2026-06-08 08:29:20 MarkDuplicates Tracking 342009 as yet unmatched pairs. 62143 records in RAM.
INFO 2026-06-08 08:29:22 MarkDuplicates Read 380,000,000 records. Elapsed time: 00:12:00s. Time for last 1,000,000: 1s. Last read position: chr17:50,199,321
INFO 2026-06-08 08:29:22 MarkDuplicates Tracking 329946 as yet unmatched pairs. 50075 records in RAM.
INFO 2026-06-08 08:29:23 MarkDuplicates Read 381,000,000 records. Elapsed time: 00:12:01s. Time for last 1,000,000: 1s. Last read position: chr17:50,663,995
INFO 2026-06-08 08:29:23 MarkDuplicates Tracking 319945 as yet unmatched pairs. 40068 records in RAM.
INFO 2026-06-08 08:29:25 MarkDuplicates Read 382,000,000 records. Elapsed time: 00:12:03s. Time for last 1,000,000: 1s. Last read position: chr17:58,358,010
INFO 2026-06-08 08:29:25 MarkDuplicates Tracking 318114 as yet unmatched pairs. 38217 records in RAM.
INFO 2026-06-08 08:29:27 MarkDuplicates Read 383,000,000 records. Elapsed time: 00:12:05s. Time for last 1,000,000: 1s. Last read position: chr17:61,953,004
INFO 2026-06-08 08:29:27 MarkDuplicates Tracking 314141 as yet unmatched pairs. 34243 records in RAM.
INFO 2026-06-08 08:29:28 MarkDuplicates Read 384,000,000 records. Elapsed time: 00:12:07s. Time for last 1,000,000: 1s. Last read position: chr17:64,919,047
INFO 2026-06-08 08:29:28 MarkDuplicates Tracking 311036 as yet unmatched pairs. 31129 records in RAM.
INFO 2026-06-08 08:29:30 MarkDuplicates Read 385,000,000 records. Elapsed time: 00:12:08s. Time for last 1,000,000: 1s. Last read position: chr17:67,948,231
INFO 2026-06-08 08:29:30 MarkDuplicates Tracking 308420 as yet unmatched pairs. 28511 records in RAM.
INFO 2026-06-08 08:29:32 MarkDuplicates Read 386,000,000 records. Elapsed time: 00:12:10s. Time for last 1,000,000: 1s. Last read position: chr17:75,093,816
INFO 2026-06-08 08:29:32 MarkDuplicates Tracking 305251 as yet unmatched pairs. 25335 records in RAM.
INFO 2026-06-08 08:29:33 MarkDuplicates Read 387,000,000 records. Elapsed time: 00:12:12s. Time for last 1,000,000: 1s. Last read position: chr17:75,727,789
INFO 2026-06-08 08:29:33 MarkDuplicates Tracking 302102 as yet unmatched pairs. 22177 records in RAM.
INFO 2026-06-08 08:29:35 MarkDuplicates Read 388,000,000 records. Elapsed time: 00:12:13s. Time for last 1,000,000: 1s. Last read position: chr17:76,471,629
INFO 2026-06-08 08:29:35 MarkDuplicates Tracking 298221 as yet unmatched pairs. 18292 records in RAM.
INFO 2026-06-08 08:29:37 MarkDuplicates Read 389,000,000 records. Elapsed time: 00:12:15s. Time for last 1,000,000: 1s. Last read position: chr17:78,972,379
INFO 2026-06-08 08:29:37 MarkDuplicates Tracking 295448 as yet unmatched pairs. 15508 records in RAM.
INFO 2026-06-08 08:29:38 MarkDuplicates Read 390,000,000 records. Elapsed time: 00:12:16s. Time for last 1,000,000: 1s. Last read position: chr17:80,373,052
INFO 2026-06-08 08:29:38 MarkDuplicates Tracking 291959 as yet unmatched pairs. 12001 records in RAM.
INFO 2026-06-08 08:29:40 MarkDuplicates Read 391,000,000 records. Elapsed time: 00:12:18s. Time for last 1,000,000: 1s. Last read position: chr17:81,701,122
INFO 2026-06-08 08:29:40 MarkDuplicates Tracking 288636 as yet unmatched pairs. 8665 records in RAM.
INFO 2026-06-08 08:29:41 MarkDuplicates Read 392,000,000 records. Elapsed time: 00:12:20s. Time for last 1,000,000: 1s. Last read position: chr17:81,983,612
INFO 2026-06-08 08:29:41 MarkDuplicates Tracking 285138 as yet unmatched pairs. 5162 records in RAM.
INFO 2026-06-08 08:29:43 MarkDuplicates Read 393,000,000 records. Elapsed time: 00:12:21s. Time for last 1,000,000: 1s. Last read position: chr17:82,445,938
INFO 2026-06-08 08:29:43 MarkDuplicates Tracking 281114 as yet unmatched pairs. 1131 records in RAM.
INFO 2026-06-08 08:29:44 MarkDuplicates Read 394,000,000 records. Elapsed time: 00:12:23s. Time for last 1,000,000: 1s. Last read position: chr18:21,623,822
INFO 2026-06-08 08:29:44 MarkDuplicates Tracking 278065 as yet unmatched pairs. 5216 records in RAM.
INFO 2026-06-08 08:29:46 MarkDuplicates Read 395,000,000 records. Elapsed time: 00:12:24s. Time for last 1,000,000: 1s. Last read position: chr18:55,228,249
INFO 2026-06-08 08:29:46 MarkDuplicates Tracking 275388 as yet unmatched pairs. 2535 records in RAM.
INFO 2026-06-08 08:29:49 MarkDuplicates Read 396,000,000 records. Elapsed time: 00:12:27s. Time for last 1,000,000: 2s. Last read position: chr19:582,766
INFO 2026-06-08 08:29:49 MarkDuplicates Tracking 272140 as yet unmatched pairs. 109232 records in RAM.
INFO 2026-06-08 08:29:50 MarkDuplicates Read 397,000,000 records. Elapsed time: 00:12:28s. Time for last 1,000,000: 1s. Last read position: chr19:1,154,224
INFO 2026-06-08 08:29:50 MarkDuplicates Tracking 268453 as yet unmatched pairs. 105541 records in RAM.
INFO 2026-06-08 08:29:52 MarkDuplicates Read 398,000,000 records. Elapsed time: 00:12:30s. Time for last 1,000,000: 1s. Last read position: chr19:1,879,839
INFO 2026-06-08 08:29:52 MarkDuplicates Tracking 264396 as yet unmatched pairs. 101474 records in RAM.
INFO 2026-06-08 08:29:53 MarkDuplicates Read 399,000,000 records. Elapsed time: 00:12:31s. Time for last 1,000,000: 1s. Last read position: chr19:3,013,705
INFO 2026-06-08 08:29:53 MarkDuplicates Tracking 260924 as yet unmatched pairs. 97992 records in RAM.
INFO 2026-06-08 08:29:55 MarkDuplicates Read 400,000,000 records. Elapsed time: 00:12:33s. Time for last 1,000,000: 1s. Last read position: chr19:4,494,205
INFO 2026-06-08 08:29:55 MarkDuplicates Tracking 257021 as yet unmatched pairs. 94078 records in RAM.
INFO 2026-06-08 08:29:57 MarkDuplicates Read 401,000,000 records. Elapsed time: 00:12:35s. Time for last 1,000,000: 1s. Last read position: chr19:5,908,996
INFO 2026-06-08 08:29:57 MarkDuplicates Tracking 253922 as yet unmatched pairs. 90976 records in RAM.
INFO 2026-06-08 08:29:58 MarkDuplicates Read 402,000,000 records. Elapsed time: 00:12:36s. Time for last 1,000,000: 1s. Last read position: chr19:7,612,430
INFO 2026-06-08 08:29:58 MarkDuplicates Tracking 250376 as yet unmatched pairs. 87427 records in RAM.
INFO 2026-06-08 08:30:00 MarkDuplicates Read 403,000,000 records. Elapsed time: 00:12:38s. Time for last 1,000,000: 1s. Last read position: chr19:10,284,528
INFO 2026-06-08 08:30:00 MarkDuplicates Tracking 246789 as yet unmatched pairs. 83838 records in RAM.
INFO 2026-06-08 08:30:01 MarkDuplicates Read 404,000,000 records. Elapsed time: 00:12:39s. Time for last 1,000,000: 1s. Last read position: chr19:11,129,494
INFO 2026-06-08 08:30:01 MarkDuplicates Tracking 243405 as yet unmatched pairs. 80445 records in RAM.
INFO 2026-06-08 08:30:03 MarkDuplicates Read 405,000,000 records. Elapsed time: 00:12:41s. Time for last 1,000,000: 1s. Last read position: chr19:12,792,225
INFO 2026-06-08 08:30:03 MarkDuplicates Tracking 240674 as yet unmatched pairs. 77711 records in RAM.
INFO 2026-06-08 08:30:05 MarkDuplicates Read 406,000,000 records. Elapsed time: 00:12:43s. Time for last 1,000,000: 1s. Last read position: chr19:14,106,785
INFO 2026-06-08 08:30:05 MarkDuplicates Tracking 237009 as yet unmatched pairs. 74034 records in RAM.
INFO 2026-06-08 08:30:06 MarkDuplicates Read 407,000,000 records. Elapsed time: 00:12:44s. Time for last 1,000,000: 1s. Last read position: chr19:15,242,907
INFO 2026-06-08 08:30:06 MarkDuplicates Tracking 233603 as yet unmatched pairs. 70623 records in RAM.
INFO 2026-06-08 08:30:08 MarkDuplicates Read 408,000,000 records. Elapsed time: 00:12:46s. Time for last 1,000,000: 1s. Last read position: chr19:16,519,158
INFO 2026-06-08 08:30:08 MarkDuplicates Tracking 230221 as yet unmatched pairs. 67233 records in RAM.
INFO 2026-06-08 08:30:09 MarkDuplicates Read 409,000,000 records. Elapsed time: 00:12:47s. Time for last 1,000,000: 1s. Last read position: chr19:17,863,191
INFO 2026-06-08 08:30:09 MarkDuplicates Tracking 226647 as yet unmatched pairs. 63655 records in RAM.
INFO 2026-06-08 08:30:11 MarkDuplicates Read 410,000,000 records. Elapsed time: 00:12:49s. Time for last 1,000,000: 1s. Last read position: chr19:19,010,136
INFO 2026-06-08 08:30:11 MarkDuplicates Tracking 223063 as yet unmatched pairs. 60063 records in RAM.
INFO 2026-06-08 08:30:13 MarkDuplicates Read 411,000,000 records. Elapsed time: 00:12:51s. Time for last 1,000,000: 1s. Last read position: chr19:34,393,952
INFO 2026-06-08 08:30:13 MarkDuplicates Tracking 220348 as yet unmatched pairs. 57336 records in RAM.
INFO 2026-06-08 08:30:14 MarkDuplicates Read 412,000,000 records. Elapsed time: 00:12:52s. Time for last 1,000,000: 1s. Last read position: chr19:35,755,552
INFO 2026-06-08 08:30:14 MarkDuplicates Tracking 216666 as yet unmatched pairs. 53648 records in RAM.
INFO 2026-06-08 08:30:15 MarkDuplicates Read 413,000,000 records. Elapsed time: 00:12:54s. Time for last 1,000,000: 1s. Last read position: chr19:38,724,067
INFO 2026-06-08 08:30:15 MarkDuplicates Tracking 213211 as yet unmatched pairs. 50184 records in RAM.
INFO 2026-06-08 08:30:17 MarkDuplicates Read 414,000,000 records. Elapsed time: 00:12:55s. Time for last 1,000,000: 1s. Last read position: chr19:39,435,632
INFO 2026-06-08 08:30:17 MarkDuplicates Tracking 210160 as yet unmatched pairs. 47133 records in RAM.
INFO 2026-06-08 08:30:19 MarkDuplicates Read 415,000,000 records. Elapsed time: 00:12:57s. Time for last 1,000,000: 1s. Last read position: chr19:40,235,313
INFO 2026-06-08 08:30:19 MarkDuplicates Tracking 207738 as yet unmatched pairs. 44708 records in RAM.
INFO 2026-06-08 08:30:20 MarkDuplicates Read 416,000,000 records. Elapsed time: 00:12:58s. Time for last 1,000,000: 1s. Last read position: chr19:41,708,664
INFO 2026-06-08 08:30:20 MarkDuplicates Tracking 213916 as yet unmatched pairs. 50883 records in RAM.
INFO 2026-06-08 08:30:22 MarkDuplicates Read 417,000,000 records. Elapsed time: 00:13:00s. Time for last 1,000,000: 1s. Last read position: chr19:41,717,660
INFO 2026-06-08 08:30:22 MarkDuplicates Tracking 205401 as yet unmatched pairs. 42367 records in RAM.
INFO 2026-06-08 08:30:23 MarkDuplicates Read 418,000,000 records. Elapsed time: 00:13:01s. Time for last 1,000,000: 1s. Last read position: chr19:41,762,064
INFO 2026-06-08 08:30:23 MarkDuplicates Tracking 198490 as yet unmatched pairs. 35451 records in RAM.
INFO 2026-06-08 08:30:25 MarkDuplicates Read 419,000,000 records. Elapsed time: 00:13:03s. Time for last 1,000,000: 1s. Last read position: chr19:42,292,992
INFO 2026-06-08 08:30:25 MarkDuplicates Tracking 195632 as yet unmatched pairs. 32589 records in RAM.
INFO 2026-06-08 08:30:27 MarkDuplicates Read 420,000,000 records. Elapsed time: 00:13:05s. Time for last 1,000,000: 1s. Last read position: chr19:45,064,532
INFO 2026-06-08 08:30:27 MarkDuplicates Tracking 191603 as yet unmatched pairs. 28545 records in RAM.
INFO 2026-06-08 08:30:28 MarkDuplicates Read 421,000,000 records. Elapsed time: 00:13:06s. Time for last 1,000,000: 1s. Last read position: chr19:46,649,670
INFO 2026-06-08 08:30:28 MarkDuplicates Tracking 187834 as yet unmatched pairs. 24773 records in RAM.
INFO 2026-06-08 08:30:30 MarkDuplicates Read 422,000,000 records. Elapsed time: 00:13:08s. Time for last 1,000,000: 1s. Last read position: chr19:48,416,011
INFO 2026-06-08 08:30:30 MarkDuplicates Tracking 184507 as yet unmatched pairs. 21445 records in RAM.
INFO 2026-06-08 08:30:31 MarkDuplicates Read 423,000,000 records. Elapsed time: 00:13:10s. Time for last 1,000,000: 1s. Last read position: chr19:49,181,441
INFO 2026-06-08 08:30:31 MarkDuplicates Tracking 181199 as yet unmatched pairs. 18129 records in RAM.
INFO 2026-06-08 08:30:33 MarkDuplicates Read 424,000,000 records. Elapsed time: 00:13:11s. Time for last 1,000,000: 1s. Last read position: chr19:49,680,491
INFO 2026-06-08 08:30:33 MarkDuplicates Tracking 177625 as yet unmatched pairs. 14550 records in RAM.
INFO 2026-06-08 08:30:35 MarkDuplicates Read 425,000,000 records. Elapsed time: 00:13:13s. Time for last 1,000,000: 1s. Last read position: chr19:50,378,566
INFO 2026-06-08 08:30:35 MarkDuplicates Tracking 173855 as yet unmatched pairs. 10778 records in RAM.
INFO 2026-06-08 08:30:37 MarkDuplicates Read 426,000,000 records. Elapsed time: 00:13:15s. Time for last 1,000,000: 1s. Last read position: chr19:54,207,418
INFO 2026-06-08 08:30:37 MarkDuplicates Tracking 171541 as yet unmatched pairs. 8460 records in RAM.
INFO 2026-06-08 08:30:38 MarkDuplicates Read 427,000,000 records. Elapsed time: 00:13:16s. Time for last 1,000,000: 1s. Last read position: chr19:55,592,659
INFO 2026-06-08 08:30:38 MarkDuplicates Tracking 167137 as yet unmatched pairs. 4050 records in RAM.
INFO 2026-06-08 08:30:40 MarkDuplicates Read 428,000,000 records. Elapsed time: 00:13:18s. Time for last 1,000,000: 1s. Last read position: chr19:58,545,761
INFO 2026-06-08 08:30:40 MarkDuplicates Tracking 163846 as yet unmatched pairs. 756 records in RAM.
INFO 2026-06-08 08:30:42 MarkDuplicates Read 429,000,000 records. Elapsed time: 00:13:20s. Time for last 1,000,000: 2s. Last read position: chr20:2,988,402
INFO 2026-06-08 08:30:42 MarkDuplicates Tracking 160534 as yet unmatched pairs. 52122 records in RAM.
INFO 2026-06-08 08:30:43 MarkDuplicates Read 430,000,000 records. Elapsed time: 00:13:22s. Time for last 1,000,000: 1s. Last read position: chr20:9,384,359
INFO 2026-06-08 08:30:43 MarkDuplicates Tracking 157553 as yet unmatched pairs. 49134 records in RAM.
INFO 2026-06-08 08:30:45 MarkDuplicates Read 431,000,000 records. Elapsed time: 00:13:23s. Time for last 1,000,000: 1s. Last read position: chr20:17,660,102
INFO 2026-06-08 08:30:45 MarkDuplicates Tracking 155848 as yet unmatched pairs. 47427 records in RAM.
INFO 2026-06-08 08:30:46 MarkDuplicates Read 432,000,000 records. Elapsed time: 00:13:25s. Time for last 1,000,000: 1s. Last read position: chr20:25,248,309
INFO 2026-06-08 08:30:46 MarkDuplicates Tracking 151932 as yet unmatched pairs. 43502 records in RAM.
INFO 2026-06-08 08:30:48 MarkDuplicates Read 433,000,000 records. Elapsed time: 00:13:26s. Time for last 1,000,000: 1s. Last read position: chr20:31,665,940
INFO 2026-06-08 08:30:48 MarkDuplicates Tracking 148410 as yet unmatched pairs. 39978 records in RAM.
INFO 2026-06-08 08:30:50 MarkDuplicates Read 434,000,000 records. Elapsed time: 00:13:28s. Time for last 1,000,000: 1s. Last read position: chr20:34,090,544
INFO 2026-06-08 08:30:50 MarkDuplicates Tracking 144828 as yet unmatched pairs. 36392 records in RAM.
INFO 2026-06-08 08:30:51 MarkDuplicates Read 435,000,000 records. Elapsed time: 00:13:29s. Time for last 1,000,000: 1s. Last read position: chr20:35,381,967
INFO 2026-06-08 08:30:51 MarkDuplicates Tracking 141585 as yet unmatched pairs. 33149 records in RAM.
INFO 2026-06-08 08:30:53 MarkDuplicates Read 436,000,000 records. Elapsed time: 00:13:31s. Time for last 1,000,000: 1s. Last read position: chr20:36,500,367
INFO 2026-06-08 08:30:53 MarkDuplicates Tracking 138723 as yet unmatched pairs. 30286 records in RAM.
INFO 2026-06-08 08:30:55 MarkDuplicates Read 437,000,000 records. Elapsed time: 00:13:33s. Time for last 1,000,000: 1s. Last read position: chr20:41,166,844
INFO 2026-06-08 08:30:55 MarkDuplicates Tracking 135366 as yet unmatched pairs. 26927 records in RAM.
INFO 2026-06-08 08:30:56 MarkDuplicates Read 438,000,000 records. Elapsed time: 00:13:34s. Time for last 1,000,000: 1s. Last read position: chr20:44,904,985
INFO 2026-06-08 08:30:56 MarkDuplicates Tracking 132451 as yet unmatched pairs. 24003 records in RAM.
INFO 2026-06-08 08:30:58 MarkDuplicates Read 439,000,000 records. Elapsed time: 00:13:36s. Time for last 1,000,000: 1s. Last read position: chr20:46,012,569
INFO 2026-06-08 08:30:58 MarkDuplicates Tracking 129062 as yet unmatched pairs. 20612 records in RAM.
INFO 2026-06-08 08:31:00 MarkDuplicates Read 440,000,000 records. Elapsed time: 00:13:38s. Time for last 1,000,000: 1s. Last read position: chr20:49,905,842
INFO 2026-06-08 08:31:00 MarkDuplicates Tracking 126445 as yet unmatched pairs. 17990 records in RAM.
INFO 2026-06-08 08:31:01 MarkDuplicates Read 441,000,000 records. Elapsed time: 00:13:39s. Time for last 1,000,000: 1s. Last read position: chr20:56,491,393
INFO 2026-06-08 08:31:01 MarkDuplicates Tracking 123031 as yet unmatched pairs. 14569 records in RAM.
INFO 2026-06-08 08:31:03 MarkDuplicates Read 442,000,000 records. Elapsed time: 00:13:41s. Time for last 1,000,000: 1s. Last read position: chr20:62,003,731
INFO 2026-06-08 08:31:03 MarkDuplicates Tracking 119645 as yet unmatched pairs. 11176 records in RAM.
INFO 2026-06-08 08:31:05 MarkDuplicates Read 443,000,000 records. Elapsed time: 00:13:43s. Time for last 1,000,000: 1s. Last read position: chr20:62,813,351
INFO 2026-06-08 08:31:05 MarkDuplicates Tracking 116348 as yet unmatched pairs. 7875 records in RAM.
INFO 2026-06-08 08:31:06 MarkDuplicates Read 444,000,000 records. Elapsed time: 00:13:44s. Time for last 1,000,000: 1s. Last read position: chr20:63,529,522
INFO 2026-06-08 08:31:06 MarkDuplicates Tracking 112752 as yet unmatched pairs. 4272 records in RAM.
INFO 2026-06-08 08:31:08 MarkDuplicates Read 445,000,000 records. Elapsed time: 00:13:46s. Time for last 1,000,000: 1s. Last read position: chr20:64,029,267
INFO 2026-06-08 08:31:08 MarkDuplicates Tracking 109097 as yet unmatched pairs. 608 records in RAM.
INFO 2026-06-08 08:31:09 MarkDuplicates Read 446,000,000 records. Elapsed time: 00:13:47s. Time for last 1,000,000: 1s. Last read position: chr21:8,257,355
INFO 2026-06-08 08:31:09 MarkDuplicates Tracking 106820 as yet unmatched pairs. 15002 records in RAM.
INFO 2026-06-08 08:31:10 MarkDuplicates Read 447,000,000 records. Elapsed time: 00:13:48s. Time for last 1,000,000: 1s. Last read position: chr21:8,399,881
INFO 2026-06-08 08:31:10 MarkDuplicates Tracking 106286 as yet unmatched pairs. 14467 records in RAM.
INFO 2026-06-08 08:31:12 MarkDuplicates Read 448,000,000 records. Elapsed time: 00:13:50s. Time for last 1,000,000: 1s. Last read position: chr21:8,443,364
INFO 2026-06-08 08:31:12 MarkDuplicates Tracking 104793 as yet unmatched pairs. 12971 records in RAM.
INFO 2026-06-08 08:31:13 MarkDuplicates Read 449,000,000 records. Elapsed time: 00:13:51s. Time for last 1,000,000: 1s. Last read position: chr21:32,368,576
INFO 2026-06-08 08:31:13 MarkDuplicates Tracking 102464 as yet unmatched pairs. 10641 records in RAM.
INFO 2026-06-08 08:31:15 MarkDuplicates Read 450,000,000 records. Elapsed time: 00:13:53s. Time for last 1,000,000: 1s. Last read position: chr21:38,819,604
INFO 2026-06-08 08:31:15 MarkDuplicates Tracking 99881 as yet unmatched pairs. 8055 records in RAM.
INFO 2026-06-08 08:31:16 MarkDuplicates Read 451,000,000 records. Elapsed time: 00:13:54s. Time for last 1,000,000: 1s. Last read position: chr21:44,895,042
INFO 2026-06-08 08:31:16 MarkDuplicates Tracking 95997 as yet unmatched pairs. 4171 records in RAM.
INFO 2026-06-08 08:31:17 MarkDuplicates Read 452,000,000 records. Elapsed time: 00:13:56s. Time for last 1,000,000: 1s. Last read position: chr21:46,326,407
INFO 2026-06-08 08:31:17 MarkDuplicates Tracking 92463 as yet unmatched pairs. 636 records in RAM.
INFO 2026-06-08 08:31:20 MarkDuplicates Read 453,000,000 records. Elapsed time: 00:13:58s. Time for last 1,000,000: 2s. Last read position: chr22:19,964,174
INFO 2026-06-08 08:31:20 MarkDuplicates Tracking 89432 as yet unmatched pairs. 37050 records in RAM.
INFO 2026-06-08 08:31:21 MarkDuplicates Read 454,000,000 records. Elapsed time: 00:13:59s. Time for last 1,000,000: 1s. Last read position: chr22:21,945,929
INFO 2026-06-08 08:31:21 MarkDuplicates Tracking 85830 as yet unmatched pairs. 33445 records in RAM.
INFO 2026-06-08 08:31:23 MarkDuplicates Read 455,000,000 records. Elapsed time: 00:14:01s. Time for last 1,000,000: 1s. Last read position: chr22:23,894,893
INFO 2026-06-08 08:31:23 MarkDuplicates Tracking 82507 as yet unmatched pairs. 30118 records in RAM.
INFO 2026-06-08 08:31:24 MarkDuplicates Read 456,000,000 records. Elapsed time: 00:14:02s. Time for last 1,000,000: 1s. Last read position: chr22:29,049,419
INFO 2026-06-08 08:31:24 MarkDuplicates Tracking 78999 as yet unmatched pairs. 26609 records in RAM.
INFO 2026-06-08 08:31:26 MarkDuplicates Read 457,000,000 records. Elapsed time: 00:14:04s. Time for last 1,000,000: 1s. Last read position: chr22:30,905,865
INFO 2026-06-08 08:31:26 MarkDuplicates Tracking 75811 as yet unmatched pairs. 23421 records in RAM.
INFO 2026-06-08 08:31:27 MarkDuplicates Read 458,000,000 records. Elapsed time: 00:14:05s. Time for last 1,000,000: 1s. Last read position: chr22:36,284,472
INFO 2026-06-08 08:31:27 MarkDuplicates Tracking 73040 as yet unmatched pairs. 20647 records in RAM.
INFO 2026-06-08 08:31:29 MarkDuplicates Read 459,000,000 records. Elapsed time: 00:14:07s. Time for last 1,000,000: 1s. Last read position: chr22:37,495,771
INFO 2026-06-08 08:31:29 MarkDuplicates Tracking 69195 as yet unmatched pairs. 16800 records in RAM.
INFO 2026-06-08 08:31:31 MarkDuplicates Read 460,000,000 records. Elapsed time: 00:14:09s. Time for last 1,000,000: 1s. Last read position: chr22:38,745,702
INFO 2026-06-08 08:31:31 MarkDuplicates Tracking 65824 as yet unmatched pairs. 13427 records in RAM.
INFO 2026-06-08 08:31:32 MarkDuplicates Read 461,000,000 records. Elapsed time: 00:14:10s. Time for last 1,000,000: 1s. Last read position: chr22:41,436,404
INFO 2026-06-08 08:31:32 MarkDuplicates Tracking 62607 as yet unmatched pairs. 10210 records in RAM.
INFO 2026-06-08 08:31:34 MarkDuplicates Read 462,000,000 records. Elapsed time: 00:14:12s. Time for last 1,000,000: 1s. Last read position: chr22:44,862,401
INFO 2026-06-08 08:31:34 MarkDuplicates Tracking 59704 as yet unmatched pairs. 7307 records in RAM.
INFO 2026-06-08 08:31:36 MarkDuplicates Read 463,000,000 records. Elapsed time: 00:14:14s. Time for last 1,000,000: 2s. Last read position: chr22:50,278,619
INFO 2026-06-08 08:31:36 MarkDuplicates Tracking 56033 as yet unmatched pairs. 3631 records in RAM.
INFO 2026-06-08 08:31:38 MarkDuplicates Read 464,000,000 records. Elapsed time: 00:14:16s. Time for last 1,000,000: 1s. Last read position: chrX:1,389,611
INFO 2026-06-08 08:31:38 MarkDuplicates Tracking 54190 as yet unmatched pairs. 41050 records in RAM.
INFO 2026-06-08 08:31:39 MarkDuplicates Read 465,000,000 records. Elapsed time: 00:14:17s. Time for last 1,000,000: 1s. Last read position: chrX:12,976,313
INFO 2026-06-08 08:31:39 MarkDuplicates Tracking 49107 as yet unmatched pairs. 35967 records in RAM.
INFO 2026-06-08 08:31:41 MarkDuplicates Read 466,000,000 records. Elapsed time: 00:14:19s. Time for last 1,000,000: 1s. Last read position: chrX:40,055,400
INFO 2026-06-08 08:31:41 MarkDuplicates Tracking 46040 as yet unmatched pairs. 32890 records in RAM.
INFO 2026-06-08 08:31:42 MarkDuplicates Read 467,000,000 records. Elapsed time: 00:14:21s. Time for last 1,000,000: 1s. Last read position: chrX:47,209,995
INFO 2026-06-08 08:31:42 MarkDuplicates Tracking 43779 as yet unmatched pairs. 30629 records in RAM.
INFO 2026-06-08 08:31:44 MarkDuplicates Read 468,000,000 records. Elapsed time: 00:14:22s. Time for last 1,000,000: 1s. Last read position: chrX:49,031,463
INFO 2026-06-08 08:31:44 MarkDuplicates Tracking 40174 as yet unmatched pairs. 27023 records in RAM.
INFO 2026-06-08 08:31:46 MarkDuplicates Read 469,000,000 records. Elapsed time: 00:14:24s. Time for last 1,000,000: 1s. Last read position: chrX:53,536,408
INFO 2026-06-08 08:31:46 MarkDuplicates Tracking 37136 as yet unmatched pairs. 23984 records in RAM.
INFO 2026-06-08 08:31:47 MarkDuplicates Read 470,000,000 records. Elapsed time: 00:14:25s. Time for last 1,000,000: 1s. Last read position: chrX:66,162,852
INFO 2026-06-08 08:31:47 MarkDuplicates Tracking 34299 as yet unmatched pairs. 21146 records in RAM.
INFO 2026-06-08 08:31:49 MarkDuplicates Read 471,000,000 records. Elapsed time: 00:14:27s. Time for last 1,000,000: 1s. Last read position: chrX:71,562,880
INFO 2026-06-08 08:31:49 MarkDuplicates Tracking 31319 as yet unmatched pairs. 18165 records in RAM.
INFO 2026-06-08 08:31:50 MarkDuplicates Read 472,000,000 records. Elapsed time: 00:14:29s. Time for last 1,000,000: 1s. Last read position: chrX:100,676,058
INFO 2026-06-08 08:31:50 MarkDuplicates Tracking 28773 as yet unmatched pairs. 15617 records in RAM.
INFO 2026-06-08 08:31:52 MarkDuplicates Read 473,000,000 records. Elapsed time: 00:14:30s. Time for last 1,000,000: 1s. Last read position: chrX:119,786,631
INFO 2026-06-08 08:31:52 MarkDuplicates Tracking 26343 as yet unmatched pairs. 13187 records in RAM.
INFO 2026-06-08 08:31:54 MarkDuplicates Read 474,000,000 records. Elapsed time: 00:14:32s. Time for last 1,000,000: 1s. Last read position: chrX:136,876,552
INFO 2026-06-08 08:31:54 MarkDuplicates Tracking 23431 as yet unmatched pairs. 10275 records in RAM.
INFO 2026-06-08 08:31:55 MarkDuplicates Read 475,000,000 records. Elapsed time: 00:14:33s. Time for last 1,000,000: 1s. Last read position: chrX:153,941,490
INFO 2026-06-08 08:31:55 MarkDuplicates Tracking 20092 as yet unmatched pairs. 6932 records in RAM.
INFO 2026-06-08 08:31:57 MarkDuplicates Read 476,000,000 records. Elapsed time: 00:14:35s. Time for last 1,000,000: 1s. Last read position: chrX:154,364,937
INFO 2026-06-08 08:31:57 MarkDuplicates Tracking 16932 as yet unmatched pairs. 3772 records in RAM.
INFO 2026-06-08 08:31:59 MarkDuplicates Read 477,000,000 records. Elapsed time: 00:14:37s. Time for last 1,000,000: 1s. Last read position: chrX:155,116,118
INFO 2026-06-08 08:31:59 MarkDuplicates Tracking 13366 as yet unmatched pairs. 204 records in RAM.
INFO 2026-06-08 08:32:00 MarkDuplicates Read 478,000,000 records. Elapsed time: 00:14:38s. Time for last 1,000,000: 1s. Last read position: GL000220.1:115,460
INFO 2026-06-08 08:32:00 MarkDuplicates Tracking 12567 as yet unmatched pairs. 2719 records in RAM.
INFO 2026-06-08 08:32:01 MarkDuplicates Read 479,000,000 records. Elapsed time: 00:14:39s. Time for last 1,000,000: 1s. Last read position: GL000220.1:158,184
INFO 2026-06-08 08:32:01 MarkDuplicates Tracking 9935 as yet unmatched pairs. 87 records in RAM.
INFO 2026-06-08 08:32:02 MarkDuplicates Read 480,000,000 records. Elapsed time: 00:14:40s. Time for last 1,000,000: 1s. Last read position: KI270733.1:131,022
INFO 2026-06-08 08:32:02 MarkDuplicates Tracking 4144 as yet unmatched pairs. 4130 records in RAM.
INFO 2026-06-08 08:32:03 MarkDuplicates Read 481,000,000 records. Elapsed time: 00:14:41s. Time for last 1,000,000: 1s. Last read position: KI270733.1:176,103
INFO 2026-06-08 08:32:03 MarkDuplicates Tracking 127 as yet unmatched pairs. 113 records in RAM.
INFO 2026-06-08 08:32:04 MarkDuplicates Read 481626973 records. 0 pairs never matched.
INFO 2026-06-08 08:32:53 MarkDuplicates After buildSortedReadEndLists freeMemory: 38857403472; totalMemory: 55499030528; maxMemory: 63585648640
INFO 2026-06-08 08:32:53 MarkDuplicates Will retain up to 1987051520 duplicate indices before spilling to disk.
INFO 2026-06-08 08:32:54 MarkDuplicates Traversing read pair information and detecting duplicates.
INFO 2026-06-08 08:33:10 OpticalDuplicateFinder Large duplicate set. size = 1319
INFO 2026-06-08 08:33:10 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,905
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1997
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,443
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1968
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,149
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1490
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,865
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1123
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,121
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,392
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1443
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,065
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1205
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,845
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1401
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,418
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,183
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1762
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,952
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 2026
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,645
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,665
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1004
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,456
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder Large duplicate set. size = 1010
INFO 2026-06-08 08:33:11 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,087
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1295
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,522
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,356
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1370
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:3,637
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1234
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,117
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1278
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,285
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1303
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,781
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1098
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,330
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1477
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,050
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1222
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,027
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1336
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,388
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 2107
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,803
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,356
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1644
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,627
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1001
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,160
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 2401
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,441
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,351
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1114
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,972
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1093
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,206
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1219
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,568
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,922
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1354
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,074
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1891
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,216
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,023
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1060
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,441
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1156
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,137
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1116
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,317
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1207
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,592
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1127
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,566
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1778
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,548
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1726
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,705
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder Large duplicate set. size = 1642
INFO 2026-06-08 08:33:12 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,370
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1077
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,178
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1374
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,374
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1548
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,997
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1090
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,709
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1177
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,776
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1104
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:27,835
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1432
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-15,033
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1081
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,610
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1569
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,844
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1375
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,011
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 3498
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,019
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-19,653
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,108
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1541
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:10,935
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 2106
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,353
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,465
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1829
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,781
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1080
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,285
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1539
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:31,621
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,066
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1281
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,228
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1266
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:13,208
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1241
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:19,842
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1506
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,558
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1211
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,020
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 2179
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,027
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,217
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder Large duplicate set. size = 1236
INFO 2026-06-08 08:33:13 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,325
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1459
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,695
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1078
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,003
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 2231
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,934
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,951
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1136
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,969
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,100
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1855
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,506
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1096
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,924
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1048
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,182
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1139
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-28,455
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1032
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,187
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1058
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,644
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1460
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,822
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1899
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:29,315
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 3646
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,406
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,983
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-22,573
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1192
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-25,170
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1022
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:17,091
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1476
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-26,699
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1312
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,613
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1133
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,847
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1826
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,946
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1050
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,819
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder Large duplicate set. size = 1255
INFO 2026-06-08 08:33:14 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,661
INFO 2026-06-08 08:33:15 OpticalDuplicateFinder Large duplicate set. size = 1084
INFO 2026-06-08 08:33:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-13,569
INFO 2026-06-08 08:33:15 OpticalDuplicateFinder Large duplicate set. size = 1938
INFO 2026-06-08 08:33:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,518
INFO 2026-06-08 08:33:15 OpticalDuplicateFinder Large duplicate set. size = 1457
INFO 2026-06-08 08:33:15 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,538
INFO 2026-06-08 08:33:22 OpticalDuplicateFinder Large duplicate set. size = 1377
INFO 2026-06-08 08:33:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-20,437
INFO 2026-06-08 08:33:22 OpticalDuplicateFinder Large duplicate set. size = 1065
INFO 2026-06-08 08:33:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,679
INFO 2026-06-08 08:33:22 OpticalDuplicateFinder Large duplicate set. size = 1254
INFO 2026-06-08 08:33:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,261
INFO 2026-06-08 08:33:22 OpticalDuplicateFinder Large duplicate set. size = 1530
INFO 2026-06-08 08:33:22 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:26,823
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1214
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,861
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1019
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,813
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1042
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,121
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1297
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,629
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1059
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,232
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1251
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,286
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1082
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:32,130
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1045
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:20,537
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1147
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,983
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1803
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,068
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1241
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:24,040
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1405
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,994
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1113
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,453
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1312
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,359
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1619
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,427
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder Large duplicate set. size = 1395
INFO 2026-06-08 08:33:23 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-21,295
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1784
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:15,012
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 2374
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-14,718
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,810
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 3139
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:1,526
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,703
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 3,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-29,474
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1089
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,484
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1092
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,957
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1061
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,981
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1049
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,561
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1268
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-23,859
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1310
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,481
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1359
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:12,472
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1142
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-27,710
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1585
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:11,614
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 2458
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,399
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:14,057
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1006
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:5,870
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 2323
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-30,493
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:25,683
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1008
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:23,312
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1969
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:2,658
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 2463
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:18,118
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 2,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:7,440
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1539
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:28,174
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1204
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-31,836
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1212
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-18,844
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1744
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-32,249
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1087
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:4,220
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1333
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:8,459
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1033
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,937
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1839
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:30,173
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1041
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-16,247
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1097
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:22,487
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1040
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:9,559
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1436
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:6,032
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1064
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:21,144
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1057
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:16,298
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder Large duplicate set. size = 1567
INFO 2026-06-08 08:33:24 OpticalDuplicateFinder compared 1,000 ReadEnds to others. Elapsed time: 00:00:00s. Time for last 1,000: 0s. Last read position: 0:-17,218
INFO 2026-06-08 08:33:29 MarkDuplicates Traversing fragment information and detecting duplicates.
WARNING 2026-06-08 08:33:29 SortingCollection There is not enough memory per file for buffering. Reading will be unbuffered.
INFO 2026-06-08 08:34:11 MarkDuplicates Sorting list of duplicate records.
INFO 2026-06-08 08:34:18 MarkDuplicates After generateDuplicateIndexes freeMemory: 37300588288; totalMemory: 53250883584; maxMemory: 63585648640
INFO 2026-06-08 08:34:18 MarkDuplicates Marking 179082806 records as duplicates.
INFO 2026-06-08 08:34:18 MarkDuplicates Found 5935639 optical duplicate clusters.
INFO 2026-06-08 08:34:18 MarkDuplicates Reads are assumed to be ordered by: coordinate
INFO 2026-06-08 08:34:33 MarkDuplicates Written 10,000,000 records. Elapsed time: 00:00:15s. Time for last 10,000,000: 15s. Last read position: chr1:31,665,196
INFO 2026-06-08 08:34:48 MarkDuplicates Written 20,000,000 records. Elapsed time: 00:00:30s. Time for last 10,000,000: 15s. Last read position: chr1:145,233,211
INFO 2026-06-08 08:35:03 MarkDuplicates Written 30,000,000 records. Elapsed time: 00:00:45s. Time for last 10,000,000: 15s. Last read position: chr1:201,387,054
INFO 2026-06-08 08:35:18 MarkDuplicates Written 40,000,000 records. Elapsed time: 00:01:00s. Time for last 10,000,000: 15s. Last read position: chr2:32,916,264
INFO 2026-06-08 08:35:34 MarkDuplicates Written 50,000,000 records. Elapsed time: 00:01:15s. Time for last 10,000,000: 15s. Last read position: chr2:108,766,694
INFO 2026-06-08 08:35:49 MarkDuplicates Written 60,000,000 records. Elapsed time: 00:01:31s. Time for last 10,000,000: 15s. Last read position: chr2:219,425,951
INFO 2026-06-08 08:36:06 MarkDuplicates Written 70,000,000 records. Elapsed time: 00:01:47s. Time for last 10,000,000: 16s. Last read position: chr3:49,721,968
INFO 2026-06-08 08:36:22 MarkDuplicates Written 80,000,000 records. Elapsed time: 00:02:04s. Time for last 10,000,000: 16s. Last read position: chr3:195,725,273
INFO 2026-06-08 08:36:39 MarkDuplicates Written 90,000,000 records. Elapsed time: 00:02:20s. Time for last 10,000,000: 16s. Last read position: chr4:151,104,204
INFO 2026-06-08 08:36:55 MarkDuplicates Written 100,000,000 records. Elapsed time: 00:02:36s. Time for last 10,000,000: 16s. Last read position: chr5:140,449,151
INFO 2026-06-08 08:37:11 MarkDuplicates Written 110,000,000 records. Elapsed time: 00:02:53s. Time for last 10,000,000: 16s. Last read position: chr6:26,123,527
INFO 2026-06-08 08:37:28 MarkDuplicates Written 120,000,000 records. Elapsed time: 00:03:09s. Time for last 10,000,000: 16s. Last read position: chr6:78,997,445
INFO 2026-06-08 08:37:43 MarkDuplicates Written 130,000,000 records. Elapsed time: 00:03:24s. Time for last 10,000,000: 15s. Last read position: chr7:6,692,089
INFO 2026-06-08 08:38:00 MarkDuplicates Written 140,000,000 records. Elapsed time: 00:03:41s. Time for last 10,000,000: 16s. Last read position: chr7:94,425,778
INFO 2026-06-08 08:38:16 MarkDuplicates Written 150,000,000 records. Elapsed time: 00:03:57s. Time for last 10,000,000: 15s. Last read position: chr7:100,994,982
INFO 2026-06-08 08:38:33 MarkDuplicates Written 160,000,000 records. Elapsed time: 00:04:14s. Time for last 10,000,000: 16s. Last read position: chr7:100,997,218
INFO 2026-06-08 08:38:48 MarkDuplicates Written 170,000,000 records. Elapsed time: 00:04:30s. Time for last 10,000,000: 15s. Last read position: chr7:100,999,083
INFO 2026-06-08 08:39:04 MarkDuplicates Written 180,000,000 records. Elapsed time: 00:04:46s. Time for last 10,000,000: 15s. Last read position: chr7:101,001,412
INFO 2026-06-08 08:39:19 MarkDuplicates Written 190,000,000 records. Elapsed time: 00:05:01s. Time for last 10,000,000: 15s. Last read position: chr7:102,655,068
INFO 2026-06-08 08:39:36 MarkDuplicates Written 200,000,000 records. Elapsed time: 00:05:17s. Time for last 10,000,000: 16s. Last read position: chr8:23,027,229
INFO 2026-06-08 08:39:53 MarkDuplicates Written 210,000,000 records. Elapsed time: 00:05:34s. Time for last 10,000,000: 16s. Last read position: chr8:143,804,646
INFO 2026-06-08 08:40:09 MarkDuplicates Written 220,000,000 records. Elapsed time: 00:05:50s. Time for last 10,000,000: 16s. Last read position: chr8:144,399,157
INFO 2026-06-08 08:40:26 MarkDuplicates Written 230,000,000 records. Elapsed time: 00:06:07s. Time for last 10,000,000: 16s. Last read position: chr9:128,166,232
INFO 2026-06-08 08:40:43 MarkDuplicates Written 240,000,000 records. Elapsed time: 00:06:24s. Time for last 10,000,000: 17s. Last read position: chr10:68,338,531
INFO 2026-06-08 08:41:00 MarkDuplicates Written 250,000,000 records. Elapsed time: 00:06:41s. Time for last 10,000,000: 17s. Last read position: chr11:1,244,872
INFO 2026-06-08 08:41:17 MarkDuplicates Written 260,000,000 records. Elapsed time: 00:06:59s. Time for last 10,000,000: 17s. Last read position: chr11:64,767,817
INFO 2026-06-08 08:41:34 MarkDuplicates Written 270,000,000 records. Elapsed time: 00:07:15s. Time for last 10,000,000: 16s. Last read position: chr11:121,055,262
INFO 2026-06-08 08:41:51 MarkDuplicates Written 280,000,000 records. Elapsed time: 00:07:32s. Time for last 10,000,000: 16s. Last read position: chr12:54,283,820
INFO 2026-06-08 08:42:08 MarkDuplicates Written 290,000,000 records. Elapsed time: 00:07:49s. Time for last 10,000,000: 17s. Last read position: chr12:122,133,464
INFO 2026-06-08 08:42:26 MarkDuplicates Written 300,000,000 records. Elapsed time: 00:08:07s. Time for last 10,000,000: 18s. Last read position: chr14:30,950,882
INFO 2026-06-08 08:42:43 MarkDuplicates Written 310,000,000 records. Elapsed time: 00:08:25s. Time for last 10,000,000: 17s. Last read position: chr14:105,707,366
INFO 2026-06-08 08:43:02 MarkDuplicates Written 320,000,000 records. Elapsed time: 00:08:43s. Time for last 10,000,000: 18s. Last read position: chr15:82,372,295
INFO 2026-06-08 08:43:27 MarkDuplicates Written 330,000,000 records. Elapsed time: 00:09:09s. Time for last 10,000,000: 25s. Last read position: chr16:15,033,342
INFO 2026-06-08 08:43:52 MarkDuplicates Written 340,000,000 records. Elapsed time: 00:09:34s. Time for last 10,000,000: 25s. Last read position: chr16:30,068,975
INFO 2026-06-08 08:44:15 MarkDuplicates Written 350,000,000 records. Elapsed time: 00:09:56s. Time for last 10,000,000: 22s. Last read position: chr16:85,657,326
INFO 2026-06-08 08:44:37 MarkDuplicates Written 360,000,000 records. Elapsed time: 00:10:19s. Time for last 10,000,000: 22s. Last read position: chr17:38,257,021
INFO 2026-06-08 08:44:58 MarkDuplicates Written 370,000,000 records. Elapsed time: 00:10:40s. Time for last 10,000,000: 21s. Last read position: chr17:50,188,765
INFO 2026-06-08 08:45:20 MarkDuplicates Written 380,000,000 records. Elapsed time: 00:11:02s. Time for last 10,000,000: 22s. Last read position: chr17:50,199,321
INFO 2026-06-08 08:45:40 MarkDuplicates Written 390,000,000 records. Elapsed time: 00:11:22s. Time for last 10,000,000: 19s. Last read position: chr17:80,373,052
INFO 2026-06-08 08:46:02 MarkDuplicates Written 400,000,000 records. Elapsed time: 00:11:43s. Time for last 10,000,000: 21s. Last read position: chr19:4,494,205
INFO 2026-06-08 08:46:24 MarkDuplicates Written 410,000,000 records. Elapsed time: 00:12:05s. Time for last 10,000,000: 22s. Last read position: chr19:19,010,136
INFO 2026-06-08 08:46:46 MarkDuplicates Written 420,000,000 records. Elapsed time: 00:12:27s. Time for last 10,000,000: 21s. Last read position: chr19:45,064,532
INFO 2026-06-08 08:47:06 MarkDuplicates Written 430,000,000 records. Elapsed time: 00:12:48s. Time for last 10,000,000: 20s. Last read position: chr20:9,384,359
INFO 2026-06-08 08:47:26 MarkDuplicates Written 440,000,000 records. Elapsed time: 00:13:07s. Time for last 10,000,000: 19s. Last read position: chr20:49,905,842
INFO 2026-06-08 08:47:44 MarkDuplicates Written 450,000,000 records. Elapsed time: 00:13:25s. Time for last 10,000,000: 17s. Last read position: chr21:38,819,604
INFO 2026-06-08 08:48:03 MarkDuplicates Written 460,000,000 records. Elapsed time: 00:13:44s. Time for last 10,000,000: 19s. Last read position: chr22:38,745,702
INFO 2026-06-08 08:48:22 MarkDuplicates Written 470,000,000 records. Elapsed time: 00:14:03s. Time for last 10,000,000: 19s. Last read position: chrX:66,162,852
INFO 2026-06-08 08:48:39 MarkDuplicates Written 480,000,000 records. Elapsed time: 00:14:21s. Time for last 10,000,000: 17s. Last read position: KI270733.1:131,022
INFO 2026-06-08 08:48:51 MarkDuplicates Writing complete. Closing input iterator.
INFO 2026-06-08 08:48:51 MarkDuplicates Duplicate Index cleanup.
INFO 2026-06-08 08:48:51 MarkDuplicates Getting Memory Stats.
INFO 2026-06-08 08:48:51 MarkDuplicates Before output close freeMemory: 201729840; totalMemory: 234881024; maxMemory: 63585648640
INFO 2026-06-08 08:48:51 MarkDuplicates Closed outputs. Getting more Memory Stats.
INFO 2026-06-08 08:48:51 MarkDuplicates After output close freeMemory: 104055784; totalMemory: 134217728; maxMemory: 63585648640
[Mon Jun 08 08:48:51 GMT 2026] picard.sam.markduplicates.MarkDuplicates done. Elapsed time: 31.52 minutes.
Runtime.totalMemory()=134217728
ls: *cram: No such file or directory
ls: *.crai: No such file or directory