AIH curated blacklist: matched 5 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 270
Pass (FILTER=PASS): 53 (19.6%)
Fail (FILTER=FAIL): 217 (80.4%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 5
All 5 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 93
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 25
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 21
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 14
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 9
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 7
confidence_below_min(low<high): 6
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 6
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 6
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 5
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 3
total_reads_below_min(6.0<8.0): 3
total_reads_below_min(5.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 3
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 2
Breakdown by confidence:
high: 53 pass, 11 fail (total: 64)
low: 0 pass, 61 fail (total: 61)
medium: 0 pass, 145 fail (total: 145)
Arriba filter: 270 rows -> 53 PASS; wrote 1173_QJL_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered.tsv and 1173_QJL_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_QJL_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filter_summary.txt