File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/87/1f76b9a8b7f6c466659542da3b2914/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:11:35
                             Started mapping on |	Jun 08 10:18:14
                                    Finished on |	Jun 08 11:14:17
       Mapping speed, Million of reads per hour |	258.78

                          Number of input reads |	241747287
                      Average input read length |	229
                                    UNIQUE READS:
                   Uniquely mapped reads number |	226074248
                        Uniquely mapped reads % |	93.52%
                          Average mapped length |	228.16
                       Number of splices: Total |	175363242
            Number of splices: Annotated (sjdb) |	170300397
                       Number of splices: GT/AG |	172702941
                       Number of splices: GC/AG |	1377800
                       Number of splices: AT/AC |	100501
               Number of splices: Non-canonical |	1182000
                      Mismatch rate per base, % |	0.33%
                         Deletion rate per base |	0.03%
                        Deletion average length |	1.86
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.67
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	10615088
             % of reads mapped to multiple loci |	4.39%
        Number of reads mapped to too many loci |	724688
             % of reads mapped to too many loci |	0.30%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3540622
                 % of reads unmapped: too short |	1.46%
                Number of reads unmapped: other |	792641
                     % of reads unmapped: other |	0.33%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%