File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/11750d42f8251de70ae296a5bcc8fe/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/11750d42f8251de70ae296a5bcc8fe/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/11750d42f8251de70ae296a5bcc8fe/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/25/f1e36a9231b9ed162f18ea267567a7/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/ed5c06f80e4ca4a3d987a3479a0534/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5
Successfully converted 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5 to 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2_kallisto_mqc.tsv
  Sample: 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2
  Mean Fragment Length: 119.2 bp
  Median Fragment Length: 112.0 bp
  pct_mito_est_counts: 0.017%
  pct_ribo_est_counts: 0.996%
  pct_hk_est_counts: 0.46%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.036%
  pct_ribo_tpm: 3.002%
  pct_hk_tpm: 0.725%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.494%