Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/910de6dca9e1c487304d5e3cdbc4f9/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/4c6530999496c9d9d6a86ef32c84d4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/4c6530999496c9d9d6a86ef32c84d4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/1dab03bb7c913b642692a7c6c37629/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/1dab03bb7c913b642692a7c6c37629/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.aurR0ltUyV/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary
-sample contains 107772690 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir  -J /tmp/nxf.aurR0ltUyV/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  -O /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.aurR0ltUyV/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes

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[2900000], rate=108478.80/min -building interval tree based on /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes

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[2510000], rate=94360.90/min 
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[2530000], rate=95112.78/min 
[2540000], rate=95428.93/min 
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[2620000], rate=97518.61/min 
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[2700000], rate=98300.97/min 
[2710000], rate=98485.77/min 
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[2730000], rate=98853.35/min 
[2740000], rate=99095.84/min 
[2750000], rate=99337.75/min 
[2760000], rate=99459.46/min 
[2770000], rate=99700.06/min 
[2780000], rate=100000.00/min 
[2790000], rate=100239.52/min 
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[2820000], rate=100475.06/min 
[2830000], rate=100473.37/min 
[2840000], rate=100590.32/min 
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[2870000], rate=101115.68/min 
[2880000], rate=101348.97/min 
[2890000], rate=101700.88/min 
[2900000], rate=101992.97/min 
[2910000], rate=102284.71/min 
[2920000], rate=102636.20/min -building interval tree based on /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=600000.00/min 
[20000], rate=400000.00/min 
[30000], rate=360000.00/min 
[40000], rate=184615.38/min 
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[1480000], rate=82146.16/min 
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[1550000], rate=81436.08/min 
[1560000], rate=81533.10/min 
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[1580000], rate=81653.75/min 
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[1970000], rate=84549.36/min 
[1980000], rate=84736.09/min 
[1990000], rate=84801.14/min 
[2000000], rate=84925.69/min 
[2010000], rate=85049.37/min 
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[2270000], rate=87419.77/min 
[2280000], rate=87580.03/min 
[2290000], rate=87627.55/min 
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[2310000], rate=87832.70/min 
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[2360000], rate=87569.57/min 
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[2440000], rate=87769.78/min 
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[2460000], rate=87961.86/min 
[2470000], rate=88109.39/min 
[2480000], rate=88413.55/min 
[2490000], rate=88770.05/min 
[2500000], rate=89126.56/min 
[2510000], rate=89429.93/min 
[2520000], rate=89732.94/min 
[2530000], rate=90035.59/min 
[2540000], rate=90337.88/min 
[2550000], rate=90479.01/min 
[2560000], rate=90672.96/min 
[2570000], rate=90812.72/min 
[2580000], rate=90845.07/min 
[2590000], rate=90983.61/min 
[2600000], rate=91068.30/min 
[2610000], rate=91152.50/min 
[2620000], rate=91183.29/min 
[2630000], rate=91108.55/min 
[2640000], rate=91034.48/min 
[2650000], rate=91013.17/min 
[2660000], rate=91147.92/min 
[2670000], rate=91334.09/min 
[2680000], rate=91519.64/min 
[2690000], rate=91600.45/min 
[2700000], rate=91525.42/min 
[2710000], rate=91554.05/min 
[2720000], rate=91531.13/min 
[2730000], rate=91610.74/min 
[2740000], rate=91741.07/min 
[2750000], rate=91768.63/min 
[2760000], rate=91846.92/min 
[2770000], rate=91924.78/min 
[2780000], rate=92052.98/min 
[2790000], rate=92180.62/min 
[2800000], rate=92307.69/min 
[2810000], rate=92535.68/min 
[2820000], rate=92864.98/min 
[2830000], rate=93092.11/min 
[2840000], rate=93318.73/min 
[2850000], rate=93544.86/min 
[2860000], rate=93668.12/min 
[2870000], rate=93841.96/min 
[2880000], rate=93964.11/min 
[2890000], rate=93983.74/min 
[2900000], rate=94054.05/min 
[2910000], rate=94174.76/min -building interval tree based on /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.12 min).
-mapping reads to genes

[10000], rate=35294.12/min 
[20000], rate=36363.64/min 
[30000], rate=36734.69/min 
[40000], rate=35820.90/min 
[50000], rate=34090.91/min 
[60000], rate=33333.33/min 
[70000], rate=32812.50/min 
[80000], rate=32214.77/min 
[90000], rate=31578.95/min 
[100000], rate=31250.00/min 
[110000], rate=30841.12/min 
[120000], rate=30508.47/min 
[130000], rate=30588.24/min 
[140000], rate=30656.93/min 
[150000], rate=31034.48/min 
[160000], rate=31270.36/min 
[170000], rate=31974.92/min 
[180000], rate=32432.43/min 
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[1080000], rate=46153.85/min 
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[1140000], rate=46689.42/min 
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[1200000], rate=47028.09/min 
[1210000], rate=47081.71/min 
[1220000], rate=47104.25/min 
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[1250000], rate=47348.48/min 
[1260000], rate=47457.63/min 
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[1280000], rate=47731.51/min 
[1290000], rate=47866.42/min 
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[1330000], rate=48363.64/min 
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[1370000], rate=48928.57/min 
[1380000], rate=49052.13/min 
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[1400000], rate=49382.72/min 
[1410000], rate=49560.63/min 
[1420000], rate=49795.44/min 
[1430000], rate=50000.00/min 
[1440000], rate=50203.37/min 
[1450000], rate=50405.56/min 
[1460000], rate=50635.84/min 
[1470000], rate=50689.66/min 
[1480000], rate=50742.86/min 
[1490000], rate=50737.80/min 
[1500000], rate=50790.07/min 
[1510000], rate=50841.75/min 
[1520000], rate=50892.86/min 
[1530000], rate=51028.35/min 
[1540000], rate=51106.19/min 
[1550000], rate=51155.12/min 
[1560000], rate=51231.53/min 
[1570000], rate=51307.19/min 
[1580000], rate=51437.87/min 
[1590000], rate=51511.88/min 
[1600000], rate=51612.90/min 
[1610000], rate=51740.76/min 
[1620000], rate=51867.66/min 
[1630000], rate=52021.28/min 
[1640000], rate=52146.26/min 
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[1660000], rate=52503.95/min 
[1670000], rate=52681.39/min 
[1680000], rate=52885.62/min 
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[1700000], rate=53235.91/min 
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[1720000], rate=53638.25/min 
[1730000], rate=53866.11/min 
[1740000], rate=54065.25/min 
[1750000], rate=54235.54/min 
[1760000], rate=54376.93/min 
[1770000], rate=54545.45/min 
[1780000], rate=54685.10/min 
[1790000], rate=54879.92/min 
[1800000], rate=55073.94/min 
[1810000], rate=55295.32/min 
[1820000], rate=55459.62/min 
[1830000], rate=55651.29/min 
[1840000], rate=55785.75/min 
[1850000], rate=55863.11/min 
[1860000], rate=55911.82/min 
[1870000], rate=56015.98/min 
[1880000], rate=56119.40/min 
[1890000], rate=56250.00/min 
[1900000], rate=56379.82/min 
[1910000], rate=56536.75/min 
[1920000], rate=56665.03/min 
[1930000], rate=56820.41/min 
[1940000], rate=56975.04/min 
[1950000], rate=57128.91/min 
[1960000], rate=57282.03/min 
[1970000], rate=57462.32/min 
[1980000], rate=57669.90/min 
[1990000], rate=57876.88/min 
[2000000], rate=58111.38/min 
[2010000], rate=58345.43/min 
[2020000], rate=58579.02/min 
[2030000], rate=58783.78/min 
[2040000], rate=58817.88/min 
[2050000], rate=58851.67/min 
[2060000], rate=58941.34/min 
[2070000], rate=59030.42/min 
[2080000], rate=59090.91/min 
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[2100000], rate=59294.12/min 
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[2120000], rate=59578.45/min 
[2130000], rate=59747.55/min 
[2140000], rate=59888.06/min 
[2150000], rate=60027.92/min 
[2160000], rate=60251.05/min 
[2170000], rate=60417.63/min 
[2180000], rate=60555.56/min 
[2190000], rate=60720.89/min 
[2200000], rate=60857.54/min 
[2210000], rate=60825.69/min 
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[2260000], rate=60971.22/min 
[2270000], rate=61131.06/min 
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[2300000], rate=61552.19/min 
[2310000], rate=61572.63/min 
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[2330000], rate=61558.78/min 
[2340000], rate=61578.95/min 
[2350000], rate=61625.87/min 
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[2370000], rate=61665.22/min 
[2380000], rate=61658.03/min 
[2390000], rate=61677.42/min 
[2400000], rate=61670.24/min 
[2410000], rate=61715.75/min 
[2420000], rate=61760.95/min 
[2430000], rate=61779.66/min 
[2440000], rate=61824.32/min 
[2450000], rate=61868.69/min 
[2460000], rate=61964.74/min 
[2470000], rate=62034.32/min 
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[2520000], rate=62350.52/min 
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[2560000], rate=62693.88/min 
[2570000], rate=62785.02/min 
[2580000], rate=62952.42/min 
[2590000], rate=63093.79/min 
[2600000], rate=63209.08/min 
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[2620000], rate=63515.15/min 
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[2640000], rate=63768.12/min 
[2650000], rate=63906.75/min 
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[2800000], rate=63708.76/min 
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[2820000], rate=63800.90/min 
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[2870000], rate=64062.50/min 
[2880000], rate=64118.74/min 
[2890000], rate=64150.94/min 
[2900000], rate=64159.29/min 
[2910000], rate=64285.71/min 
[2920000], rate=64317.18/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
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 5504587.16 reads per min processed...  
 5509090.91 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.aurR0ltUyV/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -259130.398029
EM: Round [1] log likelihood: -258377.876291
EM: Round [2] log likelihood: -258110.059800
EM: Round [3] log likelihood: -257987.245519
EM: Round [4] log likelihood: -257923.566836
EM: Round [5] log likelihood: -257888.030254
EM: Round [6] log likelihood: -257867.047171
EM: Round [7] log likelihood: -257854.019790
EM: Round [8] log likelihood: -257845.549340
EM: Round [9] log likelihood: -257839.806415
EM: Round [10] log likelihood: -257835.766034
EM: Round [11] log likelihood: -257832.830908
EM: Round [12] log likelihood: -257830.639381
EM: Round [13] log likelihood: -257828.964316
EM: Round [14] log likelihood: -257827.658119
EM: Round [15] log likelihood: -257826.621856
EM: Round [16] log likelihood: -257825.787340
EM: Round [17] log likelihood: -257825.106401
EM: Round [18] log likelihood: -257824.544264
EM: Round [19] log likelihood: -257824.075343
EM: Round [20] log likelihood: -257823.680493
EM: Round [21] log likelihood: -257823.345173
EM: Round [22] log likelihood: -257823.058197
EM: Round [23] log likelihood: -257822.810849
EM: Round [24] log likelihood: -257822.596270
EM: Round [25] log likelihood: -257822.409005
EM: Round [26] log likelihood: -257822.244676
EM: Round [27] log likelihood: -257822.099741
EM: Round [28] log likelihood: -257821.971309
EM: Round [29] log likelihood: -257821.857004
EM: Round [30] log likelihood: -257821.754862
EM: Round [31] log likelihood: -257821.663243
EM: Round [32] log likelihood: -257821.580776
EM: Round [33] log likelihood: -257821.506304
EM: Round [34] log likelihood: -257821.438845
EM: Round [35] log likelihood: -257821.377564
EM: Round [36] log likelihood: -257821.321745
EM: Round [37] log likelihood: -257821.270773
EM: Round [38] log likelihood: -257821.224116
EM: Round [39] log likelihood: -257821.181314
EM: Round [40] log likelihood: -257821.141963
EM: Round [41] log likelihood: -257821.105715
EM: Round [42] log likelihood: -257821.072260
EM: Round [43] log likelihood: -257821.041327
EM: Round [44] log likelihood: -257821.012678
EM: Round [45] log likelihood: -257820.986101
EM: Round [46] log likelihood: -257820.961408
EM: Round [47] log likelihood: -257820.938431
EM: Round [48] log likelihood: -257820.917021
EM: Round [49] log likelihood: -257820.897044
EM: Round [50] log likelihood: -257820.878380
EM: Round [51] log likelihood: -257820.860922
EM: Round [52] log likelihood: -257820.844571
EM: Round [53] log likelihood: -257820.829241
EM: Round [54] log likelihood: -257820.814852
EM: Round [55] log likelihood: -257820.801332
EM: Round [56] log likelihood: -257820.788615
EM: Round [57] log likelihood: -257820.776643
EM: Round [58] log likelihood: -257820.765360
EM: Round [59] log likelihood: -257820.754718
EM: Round [60] log likelihood: -257820.744672
EM: Round [61] log likelihood: -257820.735179
EM: Round [62] log likelihood: -257820.726202
EM: Round [63] log likelihood: -257820.717706
EM: Round [64] log likelihood: -257820.709660
EM: Round [65] log likelihood: -257820.702032
EM: Round [66] log likelihood: -257820.694797
EM: Round [67] log likelihood: -257820.687929
EM: Round [68] log likelihood: -257820.681406
EM: Round [69] log likelihood: -257820.675204
EM: Round [70] log likelihood: -257820.669305
EM: Round [71] log likelihood: -257820.663691
EM: Round [72] log likelihood: -257820.658343
EM: Round [73] log likelihood: -257820.653246
EM: Round [74] log likelihood: -257820.648386
EM: Round [75] log likelihood: -257820.643748
EM: Round [76] log likelihood: -257820.639320
EM: Round [77] log likelihood: -257820.635090
EM: Round [78] log likelihood: -257820.631046
EM: Round [79] log likelihood: -257820.627178
EM: Round [80] log likelihood: -257820.623477
EM: Round [81] log likelihood: -257820.619933
EM: Round [82] log likelihood: -257820.616537
EM: Round [83] log likelihood: -257820.613283
EM: Round [84] log likelihood: -257820.610161
EM: Round [85] log likelihood: -257820.607166
EM: Round [86] log likelihood: -257820.604291
EM: Round [87] log likelihood: -257820.601528
EM: Round [88] log likelihood: -257820.598873
EM: Round [89] log likelihood: -257820.596321
EM: Round [90] log likelihood: -257820.593865
EM: Round [91] log likelihood: -257820.591501
EM: Round [92] log likelihood: -257820.589225
EM: Round [93] log likelihood: -257820.587031
EM: Round [94] log likelihood: -257820.584917
EM: Round [95] log likelihood: -257820.582878
EM: Round [96] log likelihood: -257820.580911
EM: Round [97] log likelihood: -257820.579011
EM: Round [98] log likelihood: -257820.577177
EM: Round [99] log likelihood: -257820.575404
EM: Round [100] log likelihood: -257820.573691
EM: Round [101] log likelihood: -257820.572034
EM: Round [102] log likelihood: -257820.570430
EM: Round [103] log likelihood: -257820.568877
EM: Round [104] log likelihood: -257820.567374
EM: Round [105] log likelihood: -257820.565917
EM: Round [106] log likelihood: -257820.564505
EM: Round [107] log likelihood: -257820.563135
EM: Round [108] log likelihood: -257820.561806
EM: Round [109] log likelihood: -257820.560516
EM: Round [110] log likelihood: -257820.559264
EM: Round [111] log likelihood: -257820.558047
EM: Round [112] log likelihood: -257820.556864
EM: Round [113] log likelihood: -257820.555714
EM: Round [114] log likelihood: -257820.554595
EM: Round [115] log likelihood: -257820.553506
EM: Round [116] log likelihood: -257820.552446
EM: Round [117] log likelihood: -257820.551414
EM: Round [118] log likelihood: -257820.550408
EM: Round [119] log likelihood: -257820.549427
EM: Round [120] log likelihood: -257820.548471
EM: Round [121] log likelihood: -257820.547538
EM: Round [122] log likelihood: -257820.546628
EM: Round [123] log likelihood: -257820.545739
EM: Round [124] log likelihood: -257820.544871
EM: Round [125] log likelihood: -257820.544023
EM: Round [126] log likelihood: -257820.543195
EM: Round [127] log likelihood: -257820.542384
EM: Round [128] log likelihood: -257820.541592
EM: Round [129] log likelihood: -257820.540817
EM: Round [130] log likelihood: -257820.540058
EM: Round [131] log likelihood: -257820.539315
EM: Round [132] log likelihood: -257820.538587
EM: Round [133] log likelihood: -257820.537874
EM: Round [134] log likelihood: -257820.537176
EM: Round [135] log likelihood: -257820.536491
EM: Round [136] log likelihood: -257820.535819
EM: Round [137] log likelihood: -257820.535160
EM: Round [138] log likelihood: -257820.534513
EM: Round [139] log likelihood: -257820.533879
EM: Round [140] log likelihood: -257820.533256
EM: Round [141] log likelihood: -257820.532644
EM: Round [142] log likelihood: -257820.532042
EM: Round [143] log likelihood: -257820.531452
EM: Round [144] log likelihood: -257820.530871
EM: Round [145] log likelihood: -257820.530300
EM: Round [146] log likelihood: -257820.529739
EM: Round [147] log likelihood: -257820.529186
EM: Round [148] log likelihood: -257820.528643
EM: Round [149] log likelihood: -257820.528108
EM: Round [150] log likelihood: -257820.527582
EM: Round [151] log likelihood: -257820.527064
EM: Round [152] log likelihood: -257820.526553
EM: Round [153] log likelihood: -257820.526050
EM: Round [154] log likelihood: -257820.525555
EM: Round [155] log likelihood: -257820.525067
EM: Round [156] log likelihood: -257820.524585
EM: Round [157] log likelihood: -257820.524111
EM: Round [158] log likelihood: -257820.523643
EM: Round [159] log likelihood: -257820.523182
EM: Round [160] log likelihood: -257820.522727
EM: Round [161] log likelihood: -257820.522278
EM: Round [162] log likelihood: -257820.521835
EM: Round [163] log likelihood: -257820.521397
EM: Round [164] log likelihood: -257820.520966
EM: Round [165] log likelihood: -257820.520539
EM: Round [166] log likelihood: -257820.520119
EM: Round [167] log likelihood: -257820.519703
EM: Round [168] log likelihood: -257820.519293
EM: Round [169] log likelihood: -257820.518887
EM: Round [170] log likelihood: -257820.518487
EM: Round [171] log likelihood: -257820.518091
EM: Round [172] log likelihood: -257820.517700
EM: Round [173] log likelihood: -257820.517313
EM: Round [174] log likelihood: -257820.516931
EM: Round [175] log likelihood: -257820.516553
EM: Round [176] log likelihood: -257820.516179
EM: Round [177] log likelihood: -257820.515810
EM: Round [178] log likelihood: -257820.515445
EM: Round [179] log likelihood: -257820.515083
EM: Round [180] log likelihood: -257820.514726
EM: Round [181] log likelihood: -257820.514372
EM: Round [182] log likelihood: -257820.514022
EM: Round [183] log likelihood: -257820.513676
EM: Round [184] log likelihood: -257820.513334
EM: Round [185] log likelihood: -257820.512995
EM: Round [186] log likelihood: -257820.512659
EM: Round [187] log likelihood: -257820.512327
EM: Round [188] log likelihood: -257820.511999
EM: Round [189] log likelihood: -257820.511673
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EM: Round [192] log likelihood: -257820.510716
EM: Round [193] log likelihood: -257820.510404
EM: Round [194] log likelihood: -257820.510094
EM: Round [195] log likelihood: -257820.509787
EM: Round [196] log likelihood: -257820.509483
EM: Round [197] log likelihood: -257820.509183
EM: Round [198] log likelihood: -257820.508884
EM: Round [199] log likelihood: -257820.508589
EM: Round [200] log likelihood: -257820.508297
EM: Round [201] log likelihood: -257820.508007
EM: Round [202] log likelihood: -257820.507720
EM: Round [203] log likelihood: -257820.507436
EM: Round [204] log likelihood: -257820.507154
EM: Round [205] log likelihood: -257820.506875
EM: Round [206] log likelihood: -257820.506598
EM: Round [207] log likelihood: -257820.506324
EM: Round [208] log likelihood: -257820.506052
EM: Round [209] log likelihood: -257820.505783
EM: Round [210] log likelihood: -257820.505516
EM: Round [211] log likelihood: -257820.505251
EM: Round [212] log likelihood: -257820.504989
EM: Round [213] log likelihood: -257820.504730
EM: Round [214] log likelihood: -257820.504472
EM: Round [215] log likelihood: -257820.504217
EM: Round [216] log likelihood: -257820.503964
EM: Round [217] log likelihood: -257820.503713
EM: Round [218] log likelihood: -257820.503464
EM: Round [219] log likelihood: -257820.503218
EM: Round [220] log likelihood: -257820.502973
EM: Round [221] log likelihood: -257820.502731
EM: Round [222] log likelihood: -257820.502491
EM: Round [223] log likelihood: -257820.502253
EM: Round [224] log likelihood: -257820.502017
EM: Round [225] log likelihood: -257820.501783
EM: Round [226] log likelihood: -257820.501551
EM: Round [227] log likelihood: -257820.501321
EM: Round [228] log likelihood: -257820.501093
EM: Round [229] log likelihood: -257820.500867
EM: Round [230] log likelihood: -257820.500642
EM: Round [231] log likelihood: -257820.500420
EM: Round [232] log likelihood: -257820.500200
EM: Round [233] log likelihood: -257820.499981
EM: Round [234] log likelihood: -257820.499764
EM: Round [235] log likelihood: -257820.499549
EM: Round [236] log likelihood: -257820.499336
EM: Round [237] log likelihood: -257820.499125
EM: Round [238] log likelihood: -257820.498915
EM: Round [239] log likelihood: -257820.498708
EM: Round [240] log likelihood: -257820.498502
EM: Round [241] log likelihood: -257820.498297
EM: Round [242] log likelihood: -257820.498095
EM: Round [243] log likelihood: -257820.497894
EM: Round [244] log likelihood: -257820.497694
EM: Round [245] log likelihood: -257820.497497
EM: Round [246] log likelihood: -257820.497301
EM: Round [247] log likelihood: -257820.497106
EM: Round [248] log likelihood: -257820.496914
EM: Round [249] log likelihood: -257820.496723
EM: Round [250] log likelihood: -257820.496533
EM: Round [251] log likelihood: -257820.496345
EM: Round [252] log likelihood: -257820.496159
EM: Round [253] log likelihood: -257820.495974
EM: Round [254] log likelihood: -257820.495791
EM: Round [255] log likelihood: -257820.495609
EM: Round [256] log likelihood: -257820.495429
EM: Round [257] log likelihood: -257820.495250
EM: Round [258] log likelihood: -257820.495073
EM: Round [259] log likelihood: -257820.494897
EM: Round [260] log likelihood: -257820.494723
EM: Round [261] log likelihood: -257820.494550
EM: Round [262] log likelihood: -257820.494378
EM: Round [263] log likelihood: -257820.494208
EM: Round [264] log likelihood: -257820.494040
EM: Round [265] log likelihood: -257820.493873
EM: Round [266] log likelihood: -257820.493707
EM: Round [267] log likelihood: -257820.493542
EM: Round [268] log likelihood: -257820.493379
EM: Round [269] log likelihood: -257820.493218
EM: Round [270] log likelihood: -257820.493057
EM: Round [271] log likelihood: -257820.492898
EM: Round [272] log likelihood: -257820.492740
EM: Round [273] log likelihood: -257820.492584
EM: Round [274] log likelihood: -257820.492429
EM: Round [275] log likelihood: -257820.492275
EM: Round [276] log likelihood: -257820.492123
EM: Round [277] log likelihood: -257820.491971
EM: Round [278] log likelihood: -257820.491821
EM: Round [279] log likelihood: -257820.491673
EM: Round [280] log likelihood: -257820.491525
EM: Round [281] log likelihood: -257820.491379
EM: Round [282] log likelihood: -257820.491234
EM: Round [283] log likelihood: -257820.491090
EM: Round [284] log likelihood: -257820.490948
EM: Round [285] log likelihood: -257820.490806
EM: Round [286] log likelihood: -257820.490666
EM: Round [287] log likelihood: -257820.490527
EM: Round [288] log likelihood: -257820.490389
EM: Round [289] log likelihood: -257820.490252
EM: Round [290] log likelihood: -257820.490117
EM: Round [291] log likelihood: -257820.489982
EM: Round [292] log likelihood: -257820.489849
EM: Round [293] log likelihood: -257820.489717
EM: Round [294] log likelihood: -257820.489586
EM: Round [295] log likelihood: -257820.489456
EM: Round [296] log likelihood: -257820.489327
EM: Round [297] log likelihood: -257820.489199
EM: Round [298] log likelihood: -257820.489072
EM: Round [299] log likelihood: -257820.488947
EM: Round [300] log likelihood: -257820.488822
EM: Round [301] log likelihood: -257820.488698
EM: Round [302] log likelihood: -257820.488576
EM: Round [303] log likelihood: -257820.488454
EM: Round [304] log likelihood: -257820.488334
EM: Round [305] log likelihood: -257820.488215
EM: Round [306] log likelihood: -257820.488096
EM: Round [307] log likelihood: -257820.487979
EM: Round [308] log likelihood: -257820.487862
EM: Round [309] log likelihood: -257820.487747
EM: Round [310] log likelihood: -257820.487633
EM: Round [311] log likelihood: -257820.487519
EM: Round [312] log likelihood: -257820.487407
EM: Round [313] log likelihood: -257820.487295
EM: Round [314] log likelihood: -257820.487185
EM: Round [315] log likelihood: -257820.487075
EM: Round [316] log likelihood: -257820.486966
EM: Round [317] log likelihood: -257820.486858
EM: Round [318] log likelihood: -257820.486752
EM: Round [319] log likelihood: -257820.486646
EM: Round [320] log likelihood: -257820.486541
EM: Round [321] log likelihood: -257820.486436
EM: Round [322] log likelihood: -257820.486333
EM: Round [323] log likelihood: -257820.486231
EM: Round [324] log likelihood: -257820.486129
EM: Round [325] log likelihood: -257820.486029
EM: Round [326] log likelihood: -257820.485929
EM: Stopping iterations at round 326 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -258525.464864
EM: Round [1] log likelihood: -257893.764175
EM: Round [2] log likelihood: -257678.439300
EM: Round [3] log likelihood: -257582.356169
EM: Round [4] log likelihood: -257533.392725
EM: Round [5] log likelihood: -257506.372600
EM: Round [6] log likelihood: -257490.546865
EM: Round [7] log likelihood: -257480.787909
EM: Round [8] log likelihood: -257474.482024
EM: Round [9] log likelihood: -257470.231615
EM: Round [10] log likelihood: -257467.257448
EM: Round [11] log likelihood: -257465.107399
EM: Round [12] log likelihood: -257463.508859
EM: Round [13] log likelihood: -257462.291348
EM: Round [14] log likelihood: -257461.344572
EM: Round [15] log likelihood: -257460.594935
EM: Round [16] log likelihood: -257459.991948
EM: Round [17] log likelihood: -257459.500116
EM: Round [18] log likelihood: -257459.093936
EM: Round [19] log likelihood: -257458.754734
EM: Round [20] log likelihood: -257458.468606
EM: Round [21] log likelihood: -257458.225037
EM: Round [22] log likelihood: -257458.015974
EM: Round [23] log likelihood: -257457.835167
EM: Round [24] log likelihood: -257457.677715
EM: Round [25] log likelihood: -257457.539732
EM: Round [26] log likelihood: -257457.418109
EM: Round [27] log likelihood: -257457.310334
EM: Round [28] log likelihood: -257457.214363
EM: Round [29] log likelihood: -257457.128517
EM: Round [30] log likelihood: -257457.051409
EM: Round [31] log likelihood: -257456.981885
EM: Round [32] log likelihood: -257456.918974
EM: Round [33] log likelihood: -257456.861862
EM: Round [34] log likelihood: -257456.809856
EM: Round [35] log likelihood: -257456.762365
EM: Round [36] log likelihood: -257456.718883
EM: Round [37] log likelihood: -257456.678975
EM: Round [38] log likelihood: -257456.642262
EM: Round [39] log likelihood: -257456.608417
EM: Round [40] log likelihood: -257456.577153
EM: Round [41] log likelihood: -257456.548219
EM: Round [42] log likelihood: -257456.521394
EM: Round [43] log likelihood: -257456.496484
EM: Round [44] log likelihood: -257456.473315
EM: Round [45] log likelihood: -257456.451734
EM: Round [46] log likelihood: -257456.431604
EM: Round [47] log likelihood: -257456.412803
EM: Round [48] log likelihood: -257456.395221
EM: Round [49] log likelihood: -257456.378759
EM: Round [50] log likelihood: -257456.363329
EM: Round [51] log likelihood: -257456.348850
EM: Round [52] log likelihood: -257456.335250
EM: Round [53] log likelihood: -257456.322463
EM: Round [54] log likelihood: -257456.310428
EM: Round [55] log likelihood: -257456.299091
EM: Round [56] log likelihood: -257456.288403
EM: Round [57] log likelihood: -257456.278317
EM: Round [58] log likelihood: -257456.268793
EM: Round [59] log likelihood: -257456.259791
EM: Round [60] log likelihood: -257456.251277
EM: Round [61] log likelihood: -257456.243218
EM: Round [62] log likelihood: -257456.235585
EM: Round [63] log likelihood: -257456.228349
EM: Round [64] log likelihood: -257456.221486
EM: Round [65] log likelihood: -257456.214972
EM: Round [66] log likelihood: -257456.208785
EM: Round [67] log likelihood: -257456.202906
EM: Round [68] log likelihood: -257456.197314
EM: Round [69] log likelihood: -257456.191994
EM: Round [70] log likelihood: -257456.186929
EM: Round [71] log likelihood: -257456.182103
EM: Round [72] log likelihood: -257456.177503
EM: Round [73] log likelihood: -257456.173116
EM: Round [74] log likelihood: -257456.168929
EM: Round [75] log likelihood: -257456.164932
EM: Round [76] log likelihood: -257456.161113
EM: Round [77] log likelihood: -257456.157462
EM: Round [78] log likelihood: -257456.153971
EM: Round [79] log likelihood: -257456.150630
EM: Round [80] log likelihood: -257456.147431
EM: Round [81] log likelihood: -257456.144367
EM: Round [82] log likelihood: -257456.141430
EM: Round [83] log likelihood: -257456.138613
EM: Round [84] log likelihood: -257456.135911
EM: Round [85] log likelihood: -257456.133318
EM: Round [86] log likelihood: -257456.130826
EM: Round [87] log likelihood: -257456.128433
EM: Round [88] log likelihood: -257456.126131
EM: Round [89] log likelihood: -257456.123918
EM: Round [90] log likelihood: -257456.121787
EM: Round [91] log likelihood: -257456.119736
EM: Round [92] log likelihood: -257456.117759
EM: Round [93] log likelihood: -257456.115855
EM: Round [94] log likelihood: -257456.114018
EM: Round [95] log likelihood: -257456.112246
EM: Round [96] log likelihood: -257456.110535
EM: Round [97] log likelihood: -257456.108883
EM: Round [98] log likelihood: -257456.107286
EM: Round [99] log likelihood: -257456.105743
EM: Round [100] log likelihood: -257456.104250
EM: Round [101] log likelihood: -257456.102806
EM: Round [102] log likelihood: -257456.101408
EM: Round [103] log likelihood: -257456.100053
EM: Round [104] log likelihood: -257456.098741
EM: Round [105] log likelihood: -257456.097468
EM: Round [106] log likelihood: -257456.096234
EM: Round [107] log likelihood: -257456.095036
EM: Round [108] log likelihood: -257456.093872
EM: Round [109] log likelihood: -257456.092743
EM: Round [110] log likelihood: -257456.091645
EM: Round [111] log likelihood: -257456.090577
EM: Round [112] log likelihood: -257456.089539
EM: Round [113] log likelihood: -257456.088528
EM: Round [114] log likelihood: -257456.087544
EM: Round [115] log likelihood: -257456.086586
EM: Round [116] log likelihood: -257456.085652
EM: Round [117] log likelihood: -257456.084742
EM: Round [118] log likelihood: -257456.083854
EM: Round [119] log likelihood: -257456.082988
EM: Round [120] log likelihood: -257456.082143
EM: Round [121] log likelihood: -257456.081317
EM: Round [122] log likelihood: -257456.080510
EM: Round [123] log likelihood: -257456.079722
EM: Round [124] log likelihood: -257456.078952
EM: Round [125] log likelihood: -257456.078198
EM: Round [126] log likelihood: -257456.077460
EM: Round [127] log likelihood: -257456.076738
EM: Round [128] log likelihood: -257456.076032
EM: Round [129] log likelihood: -257456.075339
EM: Round [130] log likelihood: -257456.074661
EM: Round [131] log likelihood: -257456.073996
EM: Round [132] log likelihood: -257456.073344
EM: Round [133] log likelihood: -257456.072704
EM: Round [134] log likelihood: -257456.072076
EM: Round [135] log likelihood: -257456.071460
EM: Round [136] log likelihood: -257456.070855
EM: Round [137] log likelihood: -257456.070261
EM: Round [138] log likelihood: -257456.069678
EM: Round [139] log likelihood: -257456.069104
EM: Round [140] log likelihood: -257456.068540
EM: Round [141] log likelihood: -257456.067986
EM: Round [142] log likelihood: -257456.067440
EM: Round [143] log likelihood: -257456.066904
EM: Round [144] log likelihood: -257456.066376
EM: Round [145] log likelihood: -257456.065856
EM: Round [146] log likelihood: -257456.065344
EM: Round [147] log likelihood: -257456.064840
EM: Round [148] log likelihood: -257456.064343
EM: Round [149] log likelihood: -257456.063853
EM: Round [150] log likelihood: -257456.063371
EM: Round [151] log likelihood: -257456.062896
EM: Round [152] log likelihood: -257456.062427
EM: Round [153] log likelihood: -257456.061964
EM: Round [154] log likelihood: -257456.061508
EM: Round [155] log likelihood: -257456.061058
EM: Round [156] log likelihood: -257456.060614
EM: Round [157] log likelihood: -257456.060176
EM: Round [158] log likelihood: -257456.059743
EM: Round [159] log likelihood: -257456.059316
EM: Round [160] log likelihood: -257456.058894
EM: Round [161] log likelihood: -257456.058477
EM: Round [162] log likelihood: -257456.058065
EM: Round [163] log likelihood: -257456.057659
EM: Round [164] log likelihood: -257456.057257
EM: Round [165] log likelihood: -257456.056859
EM: Round [166] log likelihood: -257456.056467
EM: Round [167] log likelihood: -257456.056079
EM: Round [168] log likelihood: -257456.055695
EM: Round [169] log likelihood: -257456.055315
EM: Round [170] log likelihood: -257456.054940
EM: Round [171] log likelihood: -257456.054569
EM: Round [172] log likelihood: -257456.054202
EM: Round [173] log likelihood: -257456.053838
EM: Round [174] log likelihood: -257456.053479
EM: Round [175] log likelihood: -257456.053123
EM: Round [176] log likelihood: -257456.052771
EM: Round [177] log likelihood: -257456.052423
EM: Round [178] log likelihood: -257456.052078
EM: Round [179] log likelihood: -257456.051736
EM: Round [180] log likelihood: -257456.051398
EM: Round [181] log likelihood: -257456.051064
EM: Round [182] log likelihood: -257456.050732
EM: Round [183] log likelihood: -257456.050404
EM: Round [184] log likelihood: -257456.050079
EM: Round [185] log likelihood: -257456.049758
EM: Round [186] log likelihood: -257456.049439
EM: Round [187] log likelihood: -257456.049123
EM: Round [188] log likelihood: -257456.048810
EM: Round [189] log likelihood: -257456.048501
EM: Round [190] log likelihood: -257456.048194
EM: Round [191] log likelihood: -257456.047889
EM: Round [192] log likelihood: -257456.047588
EM: Round [193] log likelihood: -257456.047289
EM: Round [194] log likelihood: -257456.046993
EM: Round [195] log likelihood: -257456.046700
EM: Round [196] log likelihood: -257456.046410
EM: Round [197] log likelihood: -257456.046122
EM: Round [198] log likelihood: -257456.045836
EM: Round [199] log likelihood: -257456.045553
EM: Round [200] log likelihood: -257456.045273
EM: Round [201] log likelihood: -257456.044995
EM: Round [202] log likelihood: -257456.044719
EM: Round [203] log likelihood: -257456.044446
EM: Round [204] log likelihood: -257456.044175
EM: Round [205] log likelihood: -257456.043906
EM: Round [206] log likelihood: -257456.043640
EM: Round [207] log likelihood: -257456.043376
EM: Round [208] log likelihood: -257456.043115
EM: Round [209] log likelihood: -257456.042855
EM: Round [210] log likelihood: -257456.042598
EM: Round [211] log likelihood: -257456.042343
EM: Round [212] log likelihood: -257456.042090
EM: Round [213] log likelihood: -257456.041839
EM: Round [214] log likelihood: -257456.041590
EM: Round [215] log likelihood: -257456.041344
EM: Round [216] log likelihood: -257456.041099
EM: Round [217] log likelihood: -257456.040857
EM: Round [218] log likelihood: -257456.040616
EM: Round [219] log likelihood: -257456.040378
EM: Round [220] log likelihood: -257456.040141
EM: Round [221] log likelihood: -257456.039906
EM: Round [222] log likelihood: -257456.039674
EM: Round [223] log likelihood: -257456.039443
EM: Round [224] log likelihood: -257456.039214
EM: Round [225] log likelihood: -257456.038987
EM: Round [226] log likelihood: -257456.038762
EM: Round [227] log likelihood: -257456.038539
EM: Round [228] log likelihood: -257456.038317
EM: Round [229] log likelihood: -257456.038098
EM: Round [230] log likelihood: -257456.037880
EM: Round [231] log likelihood: -257456.037664
EM: Round [232] log likelihood: -257456.037450
EM: Round [233] log likelihood: -257456.037237
EM: Round [234] log likelihood: -257456.037026
EM: Round [235] log likelihood: -257456.036817
EM: Round [236] log likelihood: -257456.036610
EM: Round [237] log likelihood: -257456.036404
EM: Round [238] log likelihood: -257456.036200
EM: Round [239] log likelihood: -257456.035998
EM: Round [240] log likelihood: -257456.035797
EM: Round [241] log likelihood: -257456.035598
EM: Round [242] log likelihood: -257456.035401
EM: Round [243] log likelihood: -257456.035205
EM: Round [244] log likelihood: -257456.035010
EM: Round [245] log likelihood: -257456.034818
EM: Round [246] log likelihood: -257456.034627
EM: Round [247] log likelihood: -257456.034437
EM: Round [248] log likelihood: -257456.034249
EM: Round [249] log likelihood: -257456.034063
EM: Round [250] log likelihood: -257456.033878
EM: Round [251] log likelihood: -257456.033694
EM: Round [252] log likelihood: -257456.033512
EM: Round [253] log likelihood: -257456.033332
EM: Round [254] log likelihood: -257456.033153
EM: Round [255] log likelihood: -257456.032975
EM: Round [256] log likelihood: -257456.032799
EM: Round [257] log likelihood: -257456.032624
EM: Round [258] log likelihood: -257456.032451
EM: Round [259] log likelihood: -257456.032279
EM: Round [260] log likelihood: -257456.032109
EM: Round [261] log likelihood: -257456.031940
EM: Round [262] log likelihood: -257456.031772
EM: Round [263] log likelihood: -257456.031606
EM: Round [264] log likelihood: -257456.031441
EM: Round [265] log likelihood: -257456.031277
EM: Round [266] log likelihood: -257456.031115
EM: Round [267] log likelihood: -257456.030954
EM: Round [268] log likelihood: -257456.030795
EM: Round [269] log likelihood: -257456.030636
EM: Round [270] log likelihood: -257456.030479
EM: Round [271] log likelihood: -257456.030324
EM: Round [272] log likelihood: -257456.030169
EM: Round [273] log likelihood: -257456.030016
EM: Round [274] log likelihood: -257456.029864
EM: Round [275] log likelihood: -257456.029713
EM: Round [276] log likelihood: -257456.029564
EM: Round [277] log likelihood: -257456.029416
EM: Round [278] log likelihood: -257456.029269
EM: Round [279] log likelihood: -257456.029123
EM: Round [280] log likelihood: -257456.028979
EM: Round [281] log likelihood: -257456.028835
EM: Round [282] log likelihood: -257456.028693
EM: Round [283] log likelihood: -257456.028552
EM: Round [284] log likelihood: -257456.028412
EM: Round [285] log likelihood: -257456.028274
EM: Round [286] log likelihood: -257456.028136
EM: Round [287] log likelihood: -257456.028000
EM: Round [288] log likelihood: -257456.027865
EM: Round [289] log likelihood: -257456.027731
EM: Round [290] log likelihood: -257456.027598
EM: Round [291] log likelihood: -257456.027466
EM: Round [292] log likelihood: -257456.027335
EM: Round [293] log likelihood: -257456.027206
EM: Round [294] log likelihood: -257456.027077
EM: Round [295] log likelihood: -257456.026949
EM: Round [296] log likelihood: -257456.026823
EM: Round [297] log likelihood: -257456.026698
EM: Round [298] log likelihood: -257456.026573
EM: Round [299] log likelihood: -257456.026450
EM: Round [300] log likelihood: -257456.026328
EM: Round [301] log likelihood: -257456.026207
EM: Round [302] log likelihood: -257456.026086
EM: Round [303] log likelihood: -257456.025967
EM: Round [304] log likelihood: -257456.025849
EM: Round [305] log likelihood: -257456.025732
EM: Round [306] log likelihood: -257456.025616
EM: Round [307] log likelihood: -257456.025500
EM: Round [308] log likelihood: -257456.025386
EM: Round [309] log likelihood: -257456.025273
EM: Round [310] log likelihood: -257456.025160
EM: Round [311] log likelihood: -257456.025049
EM: Round [312] log likelihood: -257456.024939
EM: Round [313] log likelihood: -257456.024829
EM: Round [314] log likelihood: -257456.024721
EM: Round [315] log likelihood: -257456.024613
EM: Round [316] log likelihood: -257456.024506
EM: Round [317] log likelihood: -257456.024400
EM: Round [318] log likelihood: -257456.024295
EM: Round [319] log likelihood: -257456.024191
EM: Round [320] log likelihood: -257456.024088
EM: Round [321] log likelihood: -257456.023986
EM: Round [322] log likelihood: -257456.023885
EM: Round [323] log likelihood: -257456.023784
EM: Round [324] log likelihood: -257456.023685
EM: Stopping iterations at round 324 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 107772690 > /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir > /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir --annotate /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir
-done, see /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 623, filtered: 7098)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000229739.4]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000281103.2]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000253302.1]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000287721.1]
WARNING, no entry stored in dbm for [ENSG00000241316.8]
WARNING, no entry stored in dbm for [ENSG00000271538.6]
WARNING, no entry stored in dbm for [ENSG00000181943.5]
WARNING, no entry stored in dbm for [ENSG00000251136.9]
WARNING, no entry stored in dbm for [ENSG00000267291.1]
WARNING, no entry stored in dbm for [ENSG00000276758.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000248231.1]
WARNING, no entry stored in dbm for [ENSG00000256508.2]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000270855.1]
WARNING, no entry stored in dbm for [ENSG00000285848.1]
WARNING, no entry stored in dbm for [ENSG00000213184.3]
WARNING, no entry stored in dbm for [ENSG00000276805.2]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000241313.3]
WARNING, no entry stored in dbm for [ENSG00000260037.5]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000229956.11]
WARNING, no entry stored in dbm for [ENSG00000229140.11]
WARNING, no entry stored in dbm for [ENSG00000234420.7]
WARNING, no entry stored in dbm for [ENSG00000266821.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000232354.8]
WARNING, no entry stored in dbm for [ENSG00000278060.1]
WARNING, no entry stored in dbm for [ENSG00000286572.1]
WARNING, no entry stored in dbm for [ENSG00000237679.2]
WARNING, no entry stored in dbm for [ENSG00000223756.7]
WARNING, no entry stored in dbm for [ENSG00000226383.7]
WARNING, no entry stored in dbm for [ENSG00000186825.6]
WARNING, no entry stored in dbm for [ENSG00000214559.3]
WARNING, no entry stored in dbm for [ENSG00000259057.1]
WARNING, no entry stored in dbm for [ENSG00000240549.2]
WARNING, no entry stored in dbm for [ENSG00000180714.3]
WARNING, no entry stored in dbm for [ENSG00000241163.8]
WARNING, no entry stored in dbm for [ENSG00000261241.7]
WARNING, no entry stored in dbm for [ENSG00000283907.1]
WARNING, no entry stored in dbm for [ENSG00000282572.2]
WARNING, no entry stored in dbm for [ENSG00000277739.1]
WARNING, no entry stored in dbm for [ENSG00000283568.1]
WARNING, no entry stored in dbm for [ENSG00000261469.1]
WARNING, no entry stored in dbm for [ENSG00000163597.15]
WARNING, no entry stored in dbm for [ENSG00000236961.1]
WARNING, no entry stored in dbm for [ENSG00000233575.2]
WARNING, no entry stored in dbm for [ENSG00000225138.8]
WARNING, no entry stored in dbm for [ENSG00000251600.8]
WARNING, no entry stored in dbm for [ENSG00000201894.1]
WARNING, no entry stored in dbm for [ENSG00000196312.15]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000285867.1]
WARNING, no entry stored in dbm for [ENSG00000213935.3]
WARNING, no entry stored in dbm for [ENSG00000241129.3]
WARNING, no entry stored in dbm for [ENSG00000225470.8]
WARNING, no entry stored in dbm for [ENSG00000222678.1]
WARNING, no entry stored in dbm for [ENSG00000251635.2]
WARNING, no entry stored in dbm for [ENSG00000232354.8]
WARNING, no entry stored in dbm for [ENSG00000278231.1]
WARNING, no entry stored in dbm for [ENSG00000207955.5]
WARNING, no entry stored in dbm for [ENSG00000224368.1]
WARNING, no entry stored in dbm for [ENSG00000224368.1]
WARNING, no entry stored in dbm for [ENSG00000273125.2]
WARNING, no entry stored in dbm for [ENSG00000228264.1]
WARNING, no entry stored in dbm for [ENSG00000223705.9]
WARNING, no entry stored in dbm for [ENSG00000263317.1]
WARNING, no entry stored in dbm for [ENSG00000235531.11]
WARNING, no entry stored in dbm for [ENSG00000281731.3]
WARNING, no entry stored in dbm for [ENSG00000223396.4]
WARNING, no entry stored in dbm for [ENSG00000262879.6]
WARNING, no entry stored in dbm for [ENSG00000274354.1]
WARNING, no entry stored in dbm for [ENSG00000286295.1]
WARNING, no entry stored in dbm for [ENSG00000259763.2]
WARNING, no entry stored in dbm for [ENSG00000237339.5]
WARNING, no entry stored in dbm for [ENSG00000204588.5]
WARNING, no entry stored in dbm for [ENSG00000279182.1]
WARNING, no entry stored in dbm for [ENSG00000204588.5]
WARNING, no entry stored in dbm for [ENSG00000279182.1]
WARNING, no entry stored in dbm for [ENSG00000241769.7]
WARNING, no entry stored in dbm for [ENSG00000203721.7]
WARNING, no entry stored in dbm for [ENSG00000214851.5]
WARNING, no entry stored in dbm for [ENSG00000229437.2]
WARNING, no entry stored in dbm for [ENSG00000223768.2]
WARNING, no entry stored in dbm for [ENSG00000226097.6]
WARNING, no entry stored in dbm for [ENSG00000233930.4]
WARNING, no entry stored in dbm for [ENSG00000286948.1]
WARNING, no entry stored in dbm for [ENSG00000232710.1]
WARNING, no entry stored in dbm for [ENSG00000269821.1]
WARNING, no entry stored in dbm for [ENSG00000228818.1]
WARNING, no entry stored in dbm for [ENSG00000271943.2]
WARNING, no entry stored in dbm for [ENSG00000254266.6]
WARNING, no entry stored in dbm for [ENSG00000237424.1]
WARNING, no entry stored in dbm for [ENSG00000226539.1]
WARNING, no entry stored in dbm for [ENSG00000258018.2]
WARNING, no entry stored in dbm for [ENSG00000234945.8]
WARNING, no entry stored in dbm for [ENSG00000214433.4]
WARNING, no entry stored in dbm for [ENSG00000239533.6]
WARNING, no entry stored in dbm for [ENSG00000240787.1]
WARNING, no entry stored in dbm for [ENSG00000227902.2]
WARNING, no entry stored in dbm for [ENSG00000226777.7]
WARNING, no entry stored in dbm for [ENSG00000235618.8]
WARNING, no entry stored in dbm for [ENSG00000227954.7]
WARNING, no entry stored in dbm for [ENSG00000221891.2]
WARNING, no entry stored in dbm for [ENSG00000231841.1]
WARNING, no entry stored in dbm for [ENSG00000277739.1]
WARNING, no entry stored in dbm for [ENSG00000235142.10]
WARNING, no entry stored in dbm for [ENSG00000093100.13]
WARNING, no entry stored in dbm for [ENSG00000224032.7]
WARNING, no entry stored in dbm for [ENSG00000262580.5]
WARNING, no entry stored in dbm for [ENSG00000225361.4]
WARNING, no entry stored in dbm for [ENSG00000230239.1]
WARNING, no entry stored in dbm for [ENSG00000261790.2]
WARNING, no entry stored in dbm for [ENSG00000244306.11]
WARNING, no entry stored in dbm for [ENSG00000259637.1]
WARNING, no entry stored in dbm for [ENSG00000236948.2]
WARNING, no entry stored in dbm for [ENSG00000244300.3]
WARNING, no entry stored in dbm for [ENSG00000215386.13]
WARNING, no entry stored in dbm for [ENSG00000264063.1]
WARNING, no entry stored in dbm for [ENSG00000234817.2]
WARNING, no entry stored in dbm for [ENSG00000260492.3]
WARNING, no entry stored in dbm for [ENSG00000225270.1]
WARNING, no entry stored in dbm for [ENSG00000237949.2]
WARNING, no entry stored in dbm for [ENSG00000257842.6]
WARNING, no entry stored in dbm for [ENSG00000287243.2]
WARNING, no entry stored in dbm for [ENSG00000230091.6]
WARNING, no entry stored in dbm for [ENSG00000256030.1]
WARNING, no entry stored in dbm for [ENSG00000258975.1]
WARNING, no entry stored in dbm for [ENSG00000246627.6]
WARNING, no entry stored in dbm for [ENSG00000280401.1]
WARNING, no entry stored in dbm for [ENSG00000234996.4]
WARNING, no entry stored in dbm for [ENSG00000282317.1]
WARNING, no entry stored in dbm for [ENSG00000261286.1]
WARNING, no entry stored in dbm for [ENSG00000266373.1]
WARNING, no entry stored in dbm for [ENSG00000264964.2]
WARNING, no entry stored in dbm for [ENSG00000215895.4]
WARNING, no entry stored in dbm for [ENSG00000218418.2]
WARNING, no entry stored in dbm for [ENSG00000254605.1]
WARNING, no entry stored in dbm for [ENSG00000235582.2]
WARNING, no entry stored in dbm for [ENSG00000215016.2]
WARNING, no entry stored in dbm for [ENSG00000279124.1]
WARNING, no entry stored in dbm for [ENSG00000228430.9]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000220685.3]
WARNING, no entry stored in dbm for [ENSG00000234961.1]
WARNING, no entry stored in dbm for [ENSG00000206629.1]
WARNING, no entry stored in dbm for [ENSG00000227220.1]
WARNING, no entry stored in dbm for [ENSG00000236166.1]
WARNING, no entry stored in dbm for [ENSG00000259116.2]
WARNING, no entry stored in dbm for [ENSG00000250135.1]
WARNING, no entry stored in dbm for [ENSG00000288543.1]
WARNING, no entry stored in dbm for [ENSG00000230912.1]
WARNING, no entry stored in dbm for [ENSG00000255750.6]
WARNING, no entry stored in dbm for [ENSG00000234936.1]
WARNING, no entry stored in dbm for [ENSG00000235529.1]
WARNING, no entry stored in dbm for [ENSG00000286687.1]
WARNING, no entry stored in dbm for [ENSG00000223958.1]
WARNING, no entry stored in dbm for [ENSG00000281741.2]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000279827.1]
WARNING, no entry stored in dbm for [ENSG00000265298.1]
WARNING, no entry stored in dbm for [ENSG00000214999.3]
WARNING, no entry stored in dbm for [ENSG00000284675.1]
WARNING, no entry stored in dbm for [ENSG00000277332.1]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000224818.1]
WARNING, no entry stored in dbm for [ENSG00000284968.1]
WARNING, no entry stored in dbm for [ENSG00000284687.1]
WARNING, no entry stored in dbm for [ENSG00000248618.1]
WARNING, no entry stored in dbm for [ENSG00000262136.1]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [ENSG00000204055.5]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [ENSG00000204055.5]
WARNING, no entry stored in dbm for [ENSG00000253107.1]
WARNING, no entry stored in dbm for [ENSG00000204055.5]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000284627.1]
WARNING, no entry stored in dbm for [ENSG00000257337.7]
WARNING, no entry stored in dbm for [ENSG00000235027.1]
WARNING, no entry stored in dbm for [ENSG00000284847.1]
WARNING, no entry stored in dbm for [ENSG00000234638.1]
WARNING, no entry stored in dbm for [ENSG00000259945.1]
WARNING, no entry stored in dbm for [ENSG00000259945.1]
WARNING, no entry stored in dbm for [ENSG00000259945.1]
WARNING, no entry stored in dbm for [ENSG00000267040.6]
WARNING, no entry stored in dbm for [ENSG00000263276.1]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000249406.3]
WARNING, no entry stored in dbm for [ENSG00000259349.2]
WARNING, no entry stored in dbm for [ENSG00000280007.1]
WARNING, no entry stored in dbm for [ENSG00000259106.1]


	* STAR-Fusion complete.  See output: /tmp/nxf.aurR0ltUyV/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)