Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/910de6dca9e1c487304d5e3cdbc4f9/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/4c6530999496c9d9d6a86ef32c84d4/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/4c6530999496c9d9d6a86ef32c84d4/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/1dab03bb7c913b642692a7c6c37629/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/1dab03bb7c913b642692a7c6c37629/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.aurR0ltUyV/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary -sample contains 107772690 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir -J /tmp/nxf.aurR0ltUyV/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction -O /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.aurR0ltUyV/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction -building interval tree based on /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.12 min). -mapping reads to genes [10000], rate=85714.29/min [20000], rate=92307.69/min [30000], rate=120000.00/min [40000], rate=96000.00/min [50000], rate=78947.37/min [60000], rate=73469.39/min [70000], rate=72413.79/min [80000], rate=72727.27/min [90000], rate=80597.01/min [100000], rate=86956.52/min [110000], rate=95652.17/min [120000], rate=102857.14/min [130000], rate=108333.33/min [140000], rate=107692.31/min [150000], rate=105882.35/min [160000], rate=112941.18/min [170000], rate=120000.00/min [180000], rate=125581.40/min [190000], rate=126666.67/min [200000], rate=125000.00/min [210000], rate=124752.48/min [220000], rate=123364.49/min [230000], rate=123214.29/min [240000], rate=122033.90/min [250000], rate=120000.00/min [260000], rate=117293.23/min [270000], rate=113286.71/min [280000], rate=108387.10/min [290000], rate=106748.47/min [300000], rate=109090.91/min [310000], rate=112727.27/min [320000], rate=113609.47/min [330000], rate=113793.10/min [340000], rate=116571.43/min [350000], rate=118644.07/min [360000], rate=120670.39/min [370000], rate=120652.17/min [380000], rate=122580.65/min [390000], rate=124468.09/min [400000], rate=126315.79/min [410000], rate=126153.85/min [420000], rate=125373.13/min [430000], rate=124038.46/min [440000], rate=123364.49/min [450000], rate=123853.21/min [460000], rate=124324.32/min [470000], rate=125892.86/min [480000], rate=126872.25/min [490000], rate=129515.42/min [500000], rate=131004.37/min [510000], rate=133624.45/min [520000], rate=136244.54/min [530000], rate=138260.87/min [540000], rate=140259.74/min [550000], rate=142241.38/min [560000], rate=141772.15/min [570000], rate=141322.31/min [580000], rate=141463.41/min [590000], rate=142168.67/min [600000], rate=137404.58/min [610000], rate=134558.82/min [620000], rate=131914.89/min [630000], rate=129896.91/min [640000], rate=130169.49/min [650000], rate=131313.13/min [660000], rate=132885.91/min [670000], rate=134899.33/min [680000], rate=136454.85/min [690000], rate=137086.09/min [700000], rate=136363.64/min [710000], rate=136977.49/min [720000], rate=138906.75/min [730000], rate=140836.01/min [740000], rate=142307.69/min [750000], rate=141509.43/min [760000], rate=140740.74/min [770000], rate=141717.79/min [780000], rate=141389.73/min [790000], rate=141492.54/min [800000], rate=140350.88/min [810000], rate=139255.01/min [820000], rate=137047.35/min [830000], rate=134231.81/min [840000], rate=133687.00/min [850000], rate=134564.64/min [860000], rate=135789.47/min [870000], rate=136649.21/min [880000], rate=136434.11/min [890000], rate=137275.06/min [900000], rate=138107.42/min [910000], rate=138931.30/min [920000], rate=138693.47/min [930000], rate=139849.62/min [940000], rate=140648.38/min [950000], rate=140740.74/min [960000], rate=140487.80/min [970000], rate=140579.71/min [980000], rate=139667.46/min [990000], rate=139436.62/min [1000000], rate=139860.14/min [1010000], rate=140603.25/min [1020000], rate=141339.49/min [1030000], rate=142068.97/min [1040000], rate=143448.28/min [1050000], rate=144495.41/min [1060000], rate=145871.56/min [1070000], rate=147247.71/min [1080000], rate=148623.85/min [1090000], rate=149656.75/min [1100000], rate=150684.93/min [1110000], rate=150678.73/min [1120000], rate=150335.57/min [1130000], rate=150000.00/min [1140000], rate=150660.79/min [1150000], rate=148706.90/min [1160000], rate=146835.44/min [1170000], rate=145341.61/min [1180000], rate=144195.52/min [1190000], rate=143951.61/min [1200000], rate=144578.31/min [1210000], rate=145490.98/min [1220000], rate=146693.39/min [1230000], rate=147600.00/min [1240000], rate=148207.17/min [1250000], rate=147637.80/min [1260000], rate=147368.42/min [1270000], rate=148538.01/min [1280000], rate=149707.60/min [1290000], rate=150877.19/min [1300000], rate=150579.15/min [1310000], rate=150000.00/min [1320000], rate=150284.63/min [1330000], rate=150566.04/min [1340000], rate=150844.28/min [1350000], rate=151119.40/min [1360000], rate=150276.24/min [1370000], rate=148375.45/min [1380000], rate=146808.51/min [1390000], rate=147089.95/min [1400000], rate=148148.15/min [1410000], rate=148161.12/min [1420000], rate=148173.91/min [1430000], rate=148700.17/min [1440000], rate=149222.80/min [1450000], rate=149741.82/min [1460000], rate=150000.00/min [1470000], rate=150255.54/min [1480000], rate=150764.01/min [1490000], rate=151525.42/min [1500000], rate=151260.50/min [1510000], rate=151252.09/min [1520000], rate=151243.78/min [1530000], rate=150738.92/min [1540000], rate=150243.90/min [1550000], rate=150242.33/min [1560000], rate=150482.32/min [1570000], rate=150720.00/min [1580000], rate=151437.70/min [1590000], rate=151669.32/min [1600000], rate=151419.56/min [1610000], rate=151410.66/min [1620000], rate=151401.87/min [1630000], rate=151627.91/min [1640000], rate=150000.00/min [1650000], rate=148203.59/min [1660000], rate=146902.65/min [1670000], rate=146277.37/min [1680000], rate=146511.63/min [1690000], rate=147169.81/min [1700000], rate=147826.09/min [1710000], rate=148695.65/min [1720000], rate=149348.77/min [1730000], rate=149567.72/min [1740000], rate=148930.10/min [1750000], rate=149147.73/min [1760000], rate=150000.00/min [1770000], rate=150638.30/min [1780000], rate=151489.36/min [1790000], rate=150842.70/min [1800000], rate=150417.83/min [1810000], rate=150833.33/min [1820000], rate=150828.73/min [1830000], rate=151239.67/min [1840000], rate=150613.92/min [1850000], rate=149595.69/min [1860000], rate=148010.61/min [1870000], rate=148216.64/min [1880000], rate=148812.66/min [1890000], rate=149014.45/min [1900000], rate=148825.07/min [1910000], rate=149218.75/min [1920000], rate=149610.39/min [1930000], rate=150000.00/min [1940000], rate=149806.95/min [1950000], rate=150385.60/min [1960000], rate=150962.77/min [1970000], rate=151150.90/min [1980000], rate=151337.58/min [1990000], rate=151330.80/min [2000000], rate=151706.70/min [2010000], rate=151317.44/min [2020000], rate=151122.19/min [2030000], rate=151116.63/min [2040000], rate=151297.90/min [2050000], rate=151851.85/min [2060000], rate=152029.52/min [2070000], rate=150728.16/min [2080000], rate=147867.30/min [2090000], rate=145307.07/min [2100000], rate=143507.97/min [2110000], rate=141610.74/min [2120000], rate=139933.99/min [2130000], rate=137864.08/min [2140000], rate=136016.95/min [2150000], rate=134515.12/min [2160000], rate=132515.34/min [2170000], rate=130985.92/min [2180000], rate=129633.30/min [2190000], rate=128320.31/min [2200000], rate=127167.63/min [2210000], rate=125806.45/min [2220000], rate=124835.99/min [2230000], rate=123774.28/min [2240000], rate=122851.92/min [2250000], rate=121951.22/min [2260000], rate=121179.62/min [2270000], rate=120530.97/min [2280000], rate=119894.83/min [2290000], rate=119374.46/min [2300000], rate=118863.05/min [2310000], rate=118461.54/min [2320000], rate=118066.16/min [2330000], rate=117577.80/min [2340000], rate=117293.23/min [2350000], rate=116915.42/min [2360000], rate=116639.21/min [2370000], rate=116461.92/min [2380000], rate=116097.56/min [2390000], rate=115738.50/min [2400000], rate=115384.62/min [2410000], rate=115127.39/min [2420000], rate=114964.37/min [2430000], rate=114893.62/min [2440000], rate=114823.53/min [2450000], rate=114843.75/min [2460000], rate=114774.49/min [2470000], rate=114794.73/min [2480000], rate=114814.81/min [2490000], rate=114923.08/min [2500000], rate=115030.67/min [2510000], rate=115049.66/min [2520000], rate=115156.13/min [2530000], rate=115261.96/min [2540000], rate=115018.87/min [2550000], rate=114864.86/min [2560000], rate=114712.47/min [2570000], rate=114561.66/min [2580000], rate=114412.42/min [2590000], rate=114432.99/min [2600000], rate=114369.50/min [2610000], rate=114306.57/min [2620000], rate=114244.19/min [2630000], rate=114265.03/min [2640000], rate=114368.23/min [2650000], rate=114388.49/min [2660000], rate=114572.86/min [2670000], rate=114674.30/min [2680000], rate=114775.16/min [2690000], rate=114793.74/min [2700000], rate=114975.16/min [2710000], rate=115155.81/min [2720000], rate=115254.24/min [2730000], rate=115108.92/min [2740000], rate=114644.35/min [2750000], rate=114265.93/min [2760000], rate=113814.43/min [2770000], rate=113447.10/min [2780000], rate=113084.75/min [2790000], rate=112727.27/min [2800000], rate=112374.58/min [2810000], rate=112026.58/min [2820000], rate=111683.17/min [2830000], rate=111344.26/min [2840000], rate=110937.50/min [2850000], rate=110536.52/min [2860000], rate=110070.56/min [2870000], rate=109681.53/min [2880000], rate=109228.82/min [2890000], rate=108851.22/min [2900000], rate=108478.80/min -building interval tree based on /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.12 min). -mapping reads to genes [10000], rate=54545.45/min [20000], rate=46153.85/min [30000], rate=45000.00/min [40000], rate=42857.14/min [50000], rate=42857.14/min [60000], rate=43902.44/min [70000], rate=44210.53/min [80000], rate=43636.36/min [90000], rate=44628.10/min [100000], rate=44776.12/min [110000], rate=44594.59/min [120000], rate=45000.00/min [130000], rate=45086.71/min [140000], rate=45901.64/min [150000], rate=46632.12/min [160000], rate=47524.75/min [170000], rate=48803.83/min [180000], rate=49541.28/min [190000], rate=50220.26/min [200000], rate=51063.83/min [210000], rate=52066.12/min [220000], rate=53441.30/min [230000], rate=53906.25/min [240000], rate=54545.45/min [250000], rate=54744.53/min [260000], rate=55319.15/min [270000], rate=57042.25/min [280000], rate=58741.26/min [290000], rate=60207.61/min [300000], rate=61643.84/min [310000], rate=63481.23/min [320000], rate=65306.12/min [330000], rate=66666.67/min [340000], rate=67549.67/min [350000], rate=67961.17/min [360000], rate=68571.43/min [370000], rate=69158.88/min [380000], rate=69512.20/min [390000], rate=69026.55/min [400000], rate=67039.11/min [410000], rate=65600.00/min [420000], rate=64615.38/min [430000], rate=63861.39/min [440000], rate=63157.89/min [450000], rate=62500.00/min [460000], rate=62302.48/min [470000], rate=61842.11/min [480000], rate=61538.46/min [490000], rate=61250.00/min [500000], rate=60975.61/min [510000], rate=60714.29/min [520000], rate=61056.75/min [530000], rate=61271.68/min [540000], rate=60674.16/min [550000], rate=60000.00/min [560000], rate=59469.03/min [570000], rate=59169.55/min [580000], rate=59183.67/min [590000], rate=59000.00/min [600000], rate=59016.39/min [610000], rate=58842.44/min [620000], rate=58675.08/min [630000], rate=58604.65/min [640000], rate=58536.59/min [650000], rate=58295.96/min [660000], rate=58235.29/min [670000], rate=58260.87/min [680000], rate=58369.10/min [690000], rate=58474.58/min [700000], rate=58495.82/min [710000], rate=58436.21/min [720000], rate=58457.37/min [730000], rate=58556.15/min [740000], rate=58730.16/min [750000], rate=58670.14/min [760000], rate=58838.71/min [770000], rate=59079.28/min [780000], rate=59390.86/min [790000], rate=59622.64/min [800000], rate=59850.37/min [810000], rate=60074.17/min [820000], rate=60368.10/min [830000], rate=60583.94/min [840000], rate=60796.14/min [850000], rate=61151.08/min [860000], rate=61501.79/min [870000], rate=61775.15/min [880000], rate=62190.81/min [890000], rate=62529.27/min [900000], rate=62937.06/min [910000], rate=63341.07/min [920000], rate=63085.71/min [930000], rate=62837.84/min [940000], rate=62527.72/min [950000], rate=62227.07/min [960000], rate=61935.48/min [970000], rate=61783.44/min [980000], rate=61570.68/min [990000], rate=61363.64/min [1000000], rate=61224.49/min [1010000], rate=61150.35/min [1020000], rate=61016.95/min [1030000], rate=60886.70/min [1040000], rate=60582.52/min [1050000], rate=60693.64/min [1060000], rate=60861.24/min [1070000], rate=60853.08/min [1080000], rate=61016.95/min [1090000], rate=61121.50/min [1100000], rate=61111.11/min [1110000], rate=61213.24/min [1120000], rate=61257.98/min [1130000], rate=61468.72/min [1140000], rate=61677.19/min [1150000], rate=61827.96/min [1160000], rate=62087.42/min [1170000], rate=62178.92/min [1180000], rate=62214.41/min [1190000], rate=62303.66/min [1200000], rate=62391.68/min 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rate=70294.78/min [1560000], rate=70535.04/min [1570000], rate=70773.85/min [1580000], rate=70852.02/min [1590000], rate=71194.03/min [1600000], rate=71588.37/min [1610000], rate=71982.12/min [1620000], rate=72321.43/min [1630000], rate=72767.86/min [1640000], rate=73159.85/min [1650000], rate=73551.26/min [1660000], rate=73942.09/min [1670000], rate=74387.53/min [1680000], rate=74777.45/min [1690000], rate=75222.55/min [1700000], rate=75611.56/min [1710000], rate=76056.34/min [1720000], rate=76501.11/min [1730000], rate=76888.89/min [1740000], rate=77276.09/min [1750000], rate=77662.72/min [1760000], rate=77991.14/min [1770000], rate=78203.24/min [1780000], rate=78471.71/min [1790000], rate=78912.56/min [1800000], rate=79295.15/min [1810000], rate=79735.68/min [1820000], rate=80117.39/min [1830000], rate=80263.16/min [1840000], rate=80466.47/min [1850000], rate=80727.27/min [1860000], rate=81045.75/min [1870000], rate=81304.35/min [1880000], rate=81385.28/min [1890000], rate=81348.64/min [1900000], rate=81545.06/min [1910000], rate=81740.37/min [1920000], rate=81934.57/min [1930000], rate=82302.77/min [1940000], rate=82611.78/min [1950000], rate=82919.91/min [1960000], rate=83227.18/min [1970000], rate=83415.67/min [1980000], rate=83779.97/min [1990000], rate=84084.51/min [2000000], rate=84328.88/min [2010000], rate=84572.23/min [2020000], rate=84755.24/min [2030000], rate=84878.05/min [2040000], rate=85000.00/min [2050000], rate=85180.06/min [2060000], rate=85418.11/min [2070000], rate=85714.29/min [2080000], rate=86009.65/min [2090000], rate=86185.57/min [2100000], rate=86360.52/min [2110000], rate=86475.41/min [2120000], rate=86766.71/min [2130000], rate=86761.71/min [2140000], rate=86639.68/min [2150000], rate=86577.18/min [2160000], rate=86573.15/min [2170000], rate=86684.42/min [2180000], rate=87025.95/min [2190000], rate=87367.02/min [2200000], rate=87707.64/min [2210000], rate=88047.81/min [2220000], rate=88328.91/min [2230000], 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rate=59888.06/min [2150000], rate=60027.92/min [2160000], rate=60251.05/min [2170000], rate=60417.63/min [2180000], rate=60555.56/min [2190000], rate=60720.89/min [2200000], rate=60857.54/min [2210000], rate=60825.69/min [2220000], rate=60821.92/min [2230000], rate=60818.18/min [2240000], rate=60786.97/min [2250000], rate=60838.22/min [2260000], rate=60971.22/min [2270000], rate=61131.06/min [2280000], rate=61262.88/min [2290000], rate=61421.55/min [2300000], rate=61552.19/min [2310000], rate=61572.63/min [2320000], rate=61538.46/min [2330000], rate=61558.78/min [2340000], rate=61578.95/min [2350000], rate=61625.87/min [2360000], rate=61645.62/min [2370000], rate=61665.22/min [2380000], rate=61658.03/min [2390000], rate=61677.42/min [2400000], rate=61670.24/min [2410000], rate=61715.75/min [2420000], rate=61760.95/min [2430000], rate=61779.66/min [2440000], rate=61824.32/min [2450000], rate=61868.69/min [2460000], rate=61964.74/min [2470000], rate=62034.32/min [2480000], rate=62077.60/min [2490000], rate=62146.42/min [2500000], rate=62189.05/min [2510000], rate=62257.13/min [2520000], rate=62350.52/min [2530000], rate=62417.76/min [2540000], rate=62510.25/min [2550000], rate=62576.69/min [2560000], rate=62693.88/min [2570000], rate=62785.02/min [2580000], rate=62952.42/min [2590000], rate=63093.79/min [2600000], rate=63209.08/min [2610000], rate=63349.51/min [2620000], rate=63515.15/min [2630000], rate=63654.70/min [2640000], rate=63768.12/min [2650000], rate=63906.75/min [2660000], rate=63916.70/min [2670000], rate=63850.14/min [2680000], rate=63809.52/min [2690000], rate=63744.08/min [2700000], rate=63679.25/min [2710000], rate=63664.84/min [2720000], rate=63650.55/min [2730000], rate=63636.36/min [2740000], rate=63622.29/min [2750000], rate=63608.33/min [2760000], rate=63618.90/min [2770000], rate=63605.05/min [2780000], rate=63664.12/min [2790000], rate=63674.40/min [2800000], rate=63708.76/min [2810000], rate=63718.82/min [2820000], rate=63800.90/min [2830000], rate=63810.60/min [2840000], rate=63844.14/min [2850000], rate=63901.35/min [2860000], rate=63982.10/min [2870000], rate=64062.50/min [2880000], rate=64118.74/min [2890000], rate=64150.94/min [2900000], rate=64159.29/min [2910000], rate=64285.71/min [2920000], rate=64317.18/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir --filt_file /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 0.00 reads per min processed... 12000000.00 reads per min processed... 18000000.00 reads per min processed... 12000000.00 reads per min processed... 15000000.00 reads per min processed... 12000000.00 reads per min processed... 10500000.00 reads per min processed... 12000000.00 reads per min processed... 10800000.00 reads per min processed... 12000000.00 reads per min processed... 11000000.00 reads per min processed... 12000000.00 reads per min processed... 11142857.14 reads per min processed... 12000000.00 reads per min processed... 11250000.00 reads per min processed... 12000000.00 reads per min processed... 11333333.33 reads per min processed... 12000000.00 reads per min processed... 11400000.00 reads per min processed... 10000000.00 reads per min processed... 9692307.69 reads per min processed... 8800000.00 reads per min processed... 8117647.06 reads per min processed... 8000000.00 reads per min processed... 7500000.00 reads per min processed... 7090909.09 reads per min processed... 7043478.26 reads per min processed... 6720000.00 reads per min processed... 6444444.44 reads per min processed... 6206896.55 reads per min processed... 6200000.00 reads per min processed... 6000000.00 reads per min processed... 5823529.41 reads per min processed... 5666666.67 reads per min processed... 5675675.68 reads per min processed... 5538461.54 reads per min processed... 5414634.15 reads per min processed... 5428571.43 reads per min processed... 5441860.47 reads per min processed... 5333333.33 reads per min processed... 5347826.09 reads per min processed... 5361702.13 reads per min processed... 5265306.12 reads per min processed... 5280000.00 reads per min processed... 5192307.69 reads per min processed... 5207547.17 reads per min processed... 5127272.73 reads per min processed... 5142857.14 reads per min processed... 5157894.74 reads per min processed... 5084745.76 reads per min processed... 5100000.00 reads per min processed... 5032258.06 reads per min processed... 5047619.05 reads per min processed... 5142857.14 reads per min processed... 5076923.08 reads per min processed... 5090909.09 reads per min processed... 5104477.61 reads per min processed... 5043478.26 reads per min processed... 5057142.86 reads per min processed... 5070422.54 reads per min processed... 5083333.33 reads per min processed... 5095890.41 reads per min processed... 5040000.00 reads per min processed... 5052631.58 reads per min processed... 5131578.95 reads per min processed... 5142857.14 reads per min processed... 5220779.22 reads per min processed... 5230769.23 reads per min processed... 5307692.31 reads per min processed... 5316455.70 reads per min processed... 5392405.06 reads per min processed... 5400000.00 reads per min processed... 5475000.00 reads per min processed... 5481481.48 reads per min processed... 5555555.56 reads per min processed... 5560975.61 reads per min processed... 5634146.34 reads per min processed... 5638554.22 reads per min processed... 5642857.14 reads per min processed... 5714285.71 reads per min processed... 5717647.06 reads per min processed... 5720930.23 reads per min processed... 5724137.93 reads per min processed... 5662921.35 reads per min processed... 5666666.67 reads per min processed... 5608695.65 reads per min processed... 5612903.23 reads per min processed... 5617021.28 reads per min processed... 5621052.63 reads per min processed... 5567010.31 reads per min processed... 5571428.57 reads per min processed... 5520000.00 reads per min processed... 5524752.48 reads per min processed... 5529411.76 reads per min processed... 5533980.58 reads per min processed... 5485714.29 reads per min processed... 5490566.04 reads per min processed... 5495327.10 reads per min processed... 5500000.00 reads per min processed... 5504587.16 reads per min processed... 5509090.91 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.aurR0ltUyV/1173_RGW_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -259130.398029 EM: Round [1] log likelihood: -258377.876291 EM: Round [2] log likelihood: -258110.059800 EM: Round [3] log likelihood: -257987.245519 EM: Round [4] log likelihood: -257923.566836 EM: Round [5] log likelihood: -257888.030254 EM: Round [6] log likelihood: -257867.047171 EM: Round [7] log likelihood: -257854.019790 EM: Round [8] log likelihood: -257845.549340 EM: Round [9] log likelihood: -257839.806415 EM: Round [10] log likelihood: -257835.766034 EM: Round [11] log likelihood: -257832.830908 EM: Round [12] log likelihood: -257830.639381 EM: Round [13] log likelihood: -257828.964316 EM: Round [14] log likelihood: -257827.658119 EM: Round [15] log likelihood: -257826.621856 EM: Round [16] log likelihood: -257825.787340 EM: Round [17] log likelihood: -257825.106401 EM: Round [18] log likelihood: -257824.544264 EM: Round [19] log likelihood: -257824.075343 EM: Round [20] log likelihood: -257823.680493 EM: Round [21] log likelihood: -257823.345173 EM: Round [22] log likelihood: -257823.058197 EM: Round [23] log likelihood: -257822.810849 EM: Round [24] log likelihood: -257822.596270 EM: Round [25] log likelihood: -257822.409005 EM: Round [26] log likelihood: -257822.244676 EM: Round [27] log likelihood: -257822.099741 EM: Round [28] log likelihood: -257821.971309 EM: Round [29] log likelihood: -257821.857004 EM: Round [30] log likelihood: -257821.754862 EM: Round [31] log likelihood: -257821.663243 EM: Round [32] log likelihood: -257821.580776 EM: Round [33] log likelihood: -257821.506304 EM: Round [34] log likelihood: -257821.438845 EM: Round [35] log likelihood: -257821.377564 EM: Round [36] log likelihood: -257821.321745 EM: Round [37] log likelihood: -257821.270773 EM: Round [38] log likelihood: -257821.224116 EM: Round [39] log likelihood: -257821.181314 EM: Round [40] log likelihood: -257821.141963 EM: Round [41] log likelihood: -257821.105715 EM: Round [42] log likelihood: -257821.072260 EM: Round [43] log likelihood: -257821.041327 EM: Round [44] log likelihood: -257821.012678 EM: Round [45] log likelihood: -257820.986101 EM: Round [46] log likelihood: -257820.961408 EM: Round [47] log likelihood: -257820.938431 EM: Round [48] log likelihood: -257820.917021 EM: Round [49] log likelihood: -257820.897044 EM: Round [50] log likelihood: -257820.878380 EM: Round [51] log likelihood: -257820.860922 EM: Round [52] log likelihood: -257820.844571 EM: Round [53] log likelihood: -257820.829241 EM: Round [54] log likelihood: -257820.814852 EM: Round [55] log likelihood: -257820.801332 EM: Round [56] log likelihood: -257820.788615 EM: Round [57] log likelihood: -257820.776643 EM: Round [58] log likelihood: -257820.765360 EM: Round [59] log likelihood: -257820.754718 EM: Round [60] log likelihood: -257820.744672 EM: Round [61] log likelihood: -257820.735179 EM: Round [62] log likelihood: -257820.726202 EM: Round [63] log likelihood: -257820.717706 EM: Round [64] log likelihood: -257820.709660 EM: Round [65] log likelihood: -257820.702032 EM: Round [66] log likelihood: -257820.694797 EM: Round [67] log likelihood: -257820.687929 EM: Round [68] log likelihood: -257820.681406 EM: Round [69] log likelihood: -257820.675204 EM: Round [70] log likelihood: -257820.669305 EM: Round [71] log likelihood: -257820.663691 EM: Round [72] log likelihood: -257820.658343 EM: Round [73] log likelihood: -257820.653246 EM: Round [74] log likelihood: -257820.648386 EM: Round [75] log likelihood: -257820.643748 EM: Round [76] log likelihood: -257820.639320 EM: Round [77] log likelihood: -257820.635090 EM: Round [78] log likelihood: -257820.631046 EM: Round [79] log likelihood: -257820.627178 EM: Round [80] log likelihood: -257820.623477 EM: Round [81] log likelihood: -257820.619933 EM: Round [82] log likelihood: -257820.616537 EM: Round [83] log likelihood: -257820.613283 EM: Round [84] log likelihood: -257820.610161 EM: Round [85] log likelihood: -257820.607166 EM: Round [86] log likelihood: -257820.604291 EM: Round [87] log likelihood: -257820.601528 EM: Round [88] log likelihood: -257820.598873 EM: Round [89] log likelihood: -257820.596321 EM: Round [90] log likelihood: -257820.593865 EM: Round [91] log likelihood: -257820.591501 EM: Round [92] log likelihood: -257820.589225 EM: Round [93] log likelihood: -257820.587031 EM: Round [94] log likelihood: -257820.584917 EM: Round [95] log likelihood: -257820.582878 EM: Round [96] log likelihood: -257820.580911 EM: Round [97] log likelihood: -257820.579011 EM: Round [98] log likelihood: -257820.577177 EM: Round [99] log likelihood: -257820.575404 EM: Round [100] log likelihood: -257820.573691 EM: Round [101] log likelihood: -257820.572034 EM: Round [102] log likelihood: -257820.570430 EM: Round [103] log likelihood: -257820.568877 EM: Round [104] log likelihood: -257820.567374 EM: Round [105] log likelihood: -257820.565917 EM: Round [106] log likelihood: -257820.564505 EM: Round [107] log likelihood: -257820.563135 EM: Round [108] log likelihood: -257820.561806 EM: Round [109] log likelihood: -257820.560516 EM: Round [110] log likelihood: -257820.559264 EM: Round [111] log likelihood: -257820.558047 EM: Round [112] log likelihood: -257820.556864 EM: Round [113] log likelihood: -257820.555714 EM: Round [114] log likelihood: -257820.554595 EM: Round [115] log likelihood: -257820.553506 EM: Round [116] log likelihood: -257820.552446 EM: Round [117] log likelihood: -257820.551414 EM: Round [118] log likelihood: -257820.550408 EM: Round [119] log likelihood: -257820.549427 EM: Round [120] log likelihood: -257820.548471 EM: Round [121] log likelihood: -257820.547538 EM: Round [122] log likelihood: -257820.546628 EM: Round [123] log likelihood: -257820.545739 EM: Round [124] log likelihood: -257820.544871 EM: Round [125] log likelihood: -257820.544023 EM: Round [126] log likelihood: -257820.543195 EM: Round [127] log likelihood: -257820.542384 EM: Round [128] log likelihood: -257820.541592 EM: Round [129] log likelihood: -257820.540817 EM: Round [130] log likelihood: -257820.540058 EM: Round [131] log likelihood: -257820.539315 EM: Round [132] log likelihood: -257820.538587 EM: Round [133] log likelihood: -257820.537874 EM: Round [134] log likelihood: -257820.537176 EM: Round [135] log likelihood: -257820.536491 EM: Round [136] log likelihood: -257820.535819 EM: Round [137] log likelihood: -257820.535160 EM: Round [138] log likelihood: -257820.534513 EM: Round [139] log likelihood: -257820.533879 EM: Round [140] log likelihood: -257820.533256 EM: Round [141] log likelihood: -257820.532644 EM: Round [142] log likelihood: -257820.532042 EM: Round [143] log likelihood: -257820.531452 EM: Round [144] log likelihood: -257820.530871 EM: Round [145] log likelihood: -257820.530300 EM: Round [146] log likelihood: -257820.529739 EM: Round [147] log likelihood: -257820.529186 EM: Round [148] log likelihood: -257820.528643 EM: Round [149] log likelihood: -257820.528108 EM: Round [150] log likelihood: -257820.527582 EM: Round [151] log likelihood: -257820.527064 EM: Round [152] log likelihood: -257820.526553 EM: Round [153] log likelihood: -257820.526050 EM: Round [154] log likelihood: -257820.525555 EM: Round [155] log likelihood: -257820.525067 EM: Round [156] log likelihood: -257820.524585 EM: Round [157] log likelihood: -257820.524111 EM: Round [158] log likelihood: -257820.523643 EM: Round [159] log likelihood: -257820.523182 EM: Round [160] log likelihood: -257820.522727 EM: Round [161] log likelihood: -257820.522278 EM: Round [162] log likelihood: -257820.521835 EM: Round [163] log likelihood: -257820.521397 EM: Round [164] log likelihood: -257820.520966 EM: Round [165] log likelihood: -257820.520539 EM: Round [166] log likelihood: -257820.520119 EM: Round [167] log likelihood: -257820.519703 EM: Round [168] log likelihood: -257820.519293 EM: Round [169] log likelihood: -257820.518887 EM: Round [170] log likelihood: -257820.518487 EM: Round [171] log likelihood: -257820.518091 EM: Round [172] log likelihood: -257820.517700 EM: Round [173] log likelihood: -257820.517313 EM: Round [174] log likelihood: -257820.516931 EM: Round [175] log likelihood: -257820.516553 EM: Round [176] log likelihood: -257820.516179 EM: Round [177] log likelihood: -257820.515810 EM: Round [178] log likelihood: -257820.515445 EM: Round [179] log likelihood: -257820.515083 EM: Round [180] log likelihood: -257820.514726 EM: Round [181] log likelihood: -257820.514372 EM: Round [182] log likelihood: -257820.514022 EM: Round [183] log likelihood: -257820.513676 EM: Round [184] log likelihood: -257820.513334 EM: Round [185] log likelihood: -257820.512995 EM: Round [186] log likelihood: -257820.512659 EM: Round [187] log likelihood: -257820.512327 EM: Round [188] log likelihood: -257820.511999 EM: Round [189] log likelihood: -257820.511673 EM: Round [190] log likelihood: -257820.511351 EM: Round [191] log likelihood: -257820.511032 EM: Round [192] log likelihood: -257820.510716 EM: Round [193] log likelihood: -257820.510404 EM: Round [194] log likelihood: -257820.510094 EM: Round [195] log likelihood: -257820.509787 EM: Round [196] log likelihood: -257820.509483 EM: Round [197] log likelihood: -257820.509183 EM: Round [198] log likelihood: -257820.508884 EM: Round [199] log likelihood: -257820.508589 EM: Round [200] log likelihood: -257820.508297 EM: Round [201] log likelihood: -257820.508007 EM: Round [202] log likelihood: -257820.507720 EM: Round [203] log likelihood: -257820.507436 EM: Round [204] log likelihood: -257820.507154 EM: Round [205] log likelihood: -257820.506875 EM: Round [206] log likelihood: -257820.506598 EM: Round [207] log likelihood: -257820.506324 EM: Round [208] log likelihood: -257820.506052 EM: Round [209] log likelihood: -257820.505783 EM: Round [210] log likelihood: -257820.505516 EM: Round [211] log likelihood: -257820.505251 EM: Round [212] log likelihood: -257820.504989 EM: Round [213] log likelihood: -257820.504730 EM: Round [214] log likelihood: -257820.504472 EM: Round [215] log likelihood: -257820.504217 EM: Round [216] log likelihood: -257820.503964 EM: Round [217] log likelihood: -257820.503713 EM: Round [218] log likelihood: -257820.503464 EM: Round [219] log likelihood: -257820.503218 EM: Round [220] log likelihood: -257820.502973 EM: Round [221] log likelihood: -257820.502731 EM: Round [222] log likelihood: -257820.502491 EM: Round [223] log likelihood: -257820.502253 EM: Round [224] log likelihood: -257820.502017 EM: Round [225] log likelihood: -257820.501783 EM: Round [226] log likelihood: -257820.501551 EM: Round [227] log likelihood: -257820.501321 EM: Round [228] log likelihood: -257820.501093 EM: Round [229] log likelihood: -257820.500867 EM: Round [230] log likelihood: -257820.500642 EM: Round [231] log likelihood: -257820.500420 EM: Round [232] log likelihood: -257820.500200 EM: Round [233] log likelihood: -257820.499981 EM: Round [234] log likelihood: -257820.499764 EM: Round [235] log likelihood: -257820.499549 EM: Round [236] log likelihood: -257820.499336 EM: Round [237] log likelihood: -257820.499125 EM: Round [238] log likelihood: -257820.498915 EM: Round [239] log likelihood: -257820.498708 EM: Round [240] log likelihood: -257820.498502 EM: Round [241] log likelihood: -257820.498297 EM: Round [242] log likelihood: -257820.498095 EM: Round [243] log likelihood: -257820.497894 EM: Round [244] log likelihood: -257820.497694 EM: Round [245] log likelihood: -257820.497497 EM: Round [246] log likelihood: -257820.497301 EM: Round [247] log likelihood: -257820.497106 EM: Round [248] log likelihood: -257820.496914 EM: Round [249] log likelihood: -257820.496723 EM: Round [250] log likelihood: -257820.496533 EM: Round [251] log likelihood: -257820.496345 EM: Round [252] log likelihood: -257820.496159 EM: Round [253] log likelihood: -257820.495974 EM: Round [254] log likelihood: -257820.495791 EM: Round [255] log likelihood: -257820.495609 EM: Round [256] log likelihood: -257820.495429 EM: Round [257] log likelihood: -257820.495250 EM: Round [258] log likelihood: -257820.495073 EM: Round [259] log likelihood: -257820.494897 EM: Round [260] log likelihood: -257820.494723 EM: Round [261] log likelihood: -257820.494550 EM: Round [262] log likelihood: -257820.494378 EM: Round [263] log likelihood: -257820.494208 EM: Round [264] log likelihood: -257820.494040 EM: Round [265] log likelihood: -257820.493873 EM: Round [266] log likelihood: -257820.493707 EM: Round [267] log likelihood: -257820.493542 EM: Round [268] log likelihood: -257820.493379 EM: Round [269] log likelihood: -257820.493218 EM: Round [270] log likelihood: -257820.493057 EM: Round [271] log likelihood: -257820.492898 EM: Round [272] log likelihood: -257820.492740 EM: Round [273] log likelihood: -257820.492584 EM: Round [274] log likelihood: -257820.492429 EM: Round [275] log likelihood: -257820.492275 EM: Round [276] log likelihood: -257820.492123 EM: Round [277] log likelihood: -257820.491971 EM: Round [278] log likelihood: -257820.491821 EM: Round [279] log likelihood: -257820.491673 EM: Round [280] log likelihood: -257820.491525 EM: Round [281] log likelihood: -257820.491379 EM: Round [282] log likelihood: -257820.491234 EM: Round [283] log likelihood: -257820.491090 EM: Round [284] log likelihood: -257820.490948 EM: Round [285] log likelihood: -257820.490806 EM: Round [286] log likelihood: -257820.490666 EM: Round [287] log likelihood: -257820.490527 EM: Round [288] log likelihood: -257820.490389 EM: Round [289] log likelihood: -257820.490252 EM: Round [290] log likelihood: -257820.490117 EM: Round [291] log likelihood: -257820.489982 EM: Round [292] log likelihood: -257820.489849 EM: Round [293] log likelihood: -257820.489717 EM: Round [294] log likelihood: -257820.489586 EM: Round [295] log likelihood: -257820.489456 EM: Round [296] log likelihood: -257820.489327 EM: Round [297] log likelihood: -257820.489199 EM: Round [298] log likelihood: -257820.489072 EM: Round [299] log likelihood: -257820.488947 EM: Round [300] log likelihood: -257820.488822 EM: Round [301] log likelihood: -257820.488698 EM: Round [302] log likelihood: -257820.488576 EM: Round [303] log likelihood: -257820.488454 EM: Round [304] log likelihood: -257820.488334 EM: Round [305] log likelihood: -257820.488215 EM: Round [306] log likelihood: -257820.488096 EM: Round [307] log likelihood: -257820.487979 EM: Round [308] log likelihood: -257820.487862 EM: Round [309] log likelihood: -257820.487747 EM: Round [310] log likelihood: -257820.487633 EM: Round [311] log likelihood: -257820.487519 EM: Round [312] log likelihood: -257820.487407 EM: Round [313] log likelihood: -257820.487295 EM: Round [314] log likelihood: -257820.487185 EM: Round [315] log likelihood: -257820.487075 EM: Round [316] log likelihood: -257820.486966 EM: Round [317] log likelihood: -257820.486858 EM: Round [318] log likelihood: -257820.486752 EM: Round [319] log likelihood: -257820.486646 EM: Round [320] log likelihood: -257820.486541 EM: Round [321] log likelihood: -257820.486436 EM: Round [322] log likelihood: -257820.486333 EM: Round [323] log likelihood: -257820.486231 EM: Round [324] log likelihood: -257820.486129 EM: Round [325] log likelihood: -257820.486029 EM: Round [326] log likelihood: -257820.485929 EM: Stopping iterations at round 326 due to insufficient improvement in likelihood. EM: Starting log likelihood: -258525.464864 EM: Round [1] log likelihood: -257893.764175 EM: Round [2] log likelihood: -257678.439300 EM: Round [3] log likelihood: -257582.356169 EM: Round [4] log likelihood: -257533.392725 EM: Round [5] log likelihood: -257506.372600 EM: Round [6] log likelihood: -257490.546865 EM: Round [7] log likelihood: -257480.787909 EM: Round [8] log likelihood: -257474.482024 EM: Round [9] log likelihood: -257470.231615 EM: Round [10] log likelihood: -257467.257448 EM: Round [11] log likelihood: -257465.107399 EM: Round [12] log likelihood: -257463.508859 EM: Round [13] log likelihood: -257462.291348 EM: Round [14] log likelihood: -257461.344572 EM: Round [15] log likelihood: -257460.594935 EM: Round [16] log likelihood: -257459.991948 EM: Round [17] log likelihood: -257459.500116 EM: Round [18] log likelihood: -257459.093936 EM: Round [19] log likelihood: -257458.754734 EM: Round [20] log likelihood: -257458.468606 EM: Round [21] log likelihood: -257458.225037 EM: Round [22] log likelihood: -257458.015974 EM: Round [23] log likelihood: -257457.835167 EM: Round [24] log likelihood: -257457.677715 EM: Round [25] log likelihood: -257457.539732 EM: Round [26] log likelihood: -257457.418109 EM: Round [27] log likelihood: -257457.310334 EM: Round [28] log likelihood: -257457.214363 EM: Round [29] log likelihood: -257457.128517 EM: Round [30] log likelihood: -257457.051409 EM: Round [31] log likelihood: -257456.981885 EM: Round [32] log likelihood: -257456.918974 EM: Round [33] log likelihood: -257456.861862 EM: Round [34] log likelihood: -257456.809856 EM: Round [35] log likelihood: -257456.762365 EM: Round [36] log likelihood: -257456.718883 EM: Round [37] log likelihood: -257456.678975 EM: Round [38] log likelihood: -257456.642262 EM: Round [39] log likelihood: -257456.608417 EM: Round [40] log likelihood: -257456.577153 EM: Round [41] log likelihood: -257456.548219 EM: Round [42] log likelihood: -257456.521394 EM: Round [43] log likelihood: -257456.496484 EM: Round [44] log likelihood: -257456.473315 EM: Round [45] log likelihood: -257456.451734 EM: Round [46] log likelihood: -257456.431604 EM: Round [47] log likelihood: -257456.412803 EM: Round [48] log likelihood: -257456.395221 EM: Round [49] log likelihood: -257456.378759 EM: Round [50] log likelihood: -257456.363329 EM: Round [51] log likelihood: -257456.348850 EM: Round [52] log likelihood: -257456.335250 EM: Round [53] log likelihood: -257456.322463 EM: Round [54] log likelihood: -257456.310428 EM: Round [55] log likelihood: -257456.299091 EM: Round [56] log likelihood: -257456.288403 EM: Round [57] log likelihood: -257456.278317 EM: Round [58] log likelihood: -257456.268793 EM: Round [59] log likelihood: -257456.259791 EM: Round [60] log likelihood: -257456.251277 EM: Round [61] log likelihood: -257456.243218 EM: Round [62] log likelihood: -257456.235585 EM: Round [63] log likelihood: -257456.228349 EM: Round [64] log likelihood: -257456.221486 EM: Round [65] log likelihood: -257456.214972 EM: Round [66] log likelihood: -257456.208785 EM: Round [67] log likelihood: -257456.202906 EM: Round [68] log likelihood: -257456.197314 EM: Round [69] log likelihood: -257456.191994 EM: Round [70] log likelihood: -257456.186929 EM: Round [71] log likelihood: -257456.182103 EM: Round [72] log likelihood: -257456.177503 EM: Round [73] log likelihood: -257456.173116 EM: Round [74] log likelihood: -257456.168929 EM: Round [75] log likelihood: -257456.164932 EM: Round [76] log likelihood: -257456.161113 EM: Round [77] log likelihood: -257456.157462 EM: Round [78] log likelihood: -257456.153971 EM: Round [79] log likelihood: -257456.150630 EM: Round [80] log likelihood: -257456.147431 EM: Round [81] log likelihood: -257456.144367 EM: Round [82] log likelihood: -257456.141430 EM: Round [83] log likelihood: -257456.138613 EM: Round [84] log likelihood: -257456.135911 EM: Round [85] log likelihood: -257456.133318 EM: Round [86] log likelihood: -257456.130826 EM: Round [87] log likelihood: -257456.128433 EM: Round [88] log likelihood: -257456.126131 EM: Round [89] log likelihood: -257456.123918 EM: Round [90] log likelihood: -257456.121787 EM: Round [91] log likelihood: -257456.119736 EM: Round [92] log likelihood: -257456.117759 EM: Round [93] log likelihood: -257456.115855 EM: Round [94] log likelihood: -257456.114018 EM: Round [95] log likelihood: -257456.112246 EM: Round [96] log likelihood: -257456.110535 EM: Round [97] log likelihood: -257456.108883 EM: Round [98] log likelihood: -257456.107286 EM: Round [99] log likelihood: -257456.105743 EM: Round [100] log likelihood: -257456.104250 EM: Round [101] log likelihood: -257456.102806 EM: Round [102] log likelihood: -257456.101408 EM: Round [103] log likelihood: -257456.100053 EM: Round [104] log likelihood: -257456.098741 EM: Round [105] log likelihood: -257456.097468 EM: Round [106] log likelihood: -257456.096234 EM: Round [107] log likelihood: -257456.095036 EM: Round [108] log likelihood: -257456.093872 EM: Round [109] log likelihood: -257456.092743 EM: Round [110] log likelihood: -257456.091645 EM: Round [111] log likelihood: -257456.090577 EM: Round [112] log likelihood: -257456.089539 EM: Round [113] log likelihood: -257456.088528 EM: Round [114] log likelihood: -257456.087544 EM: Round [115] log likelihood: -257456.086586 EM: Round [116] log likelihood: -257456.085652 EM: Round [117] log likelihood: -257456.084742 EM: Round [118] log likelihood: -257456.083854 EM: Round [119] log likelihood: -257456.082988 EM: Round [120] log likelihood: -257456.082143 EM: Round [121] log likelihood: -257456.081317 EM: Round [122] log likelihood: -257456.080510 EM: Round [123] log likelihood: -257456.079722 EM: Round [124] log likelihood: -257456.078952 EM: Round [125] log likelihood: -257456.078198 EM: Round [126] log likelihood: -257456.077460 EM: Round [127] log likelihood: -257456.076738 EM: Round [128] log likelihood: -257456.076032 EM: Round [129] log likelihood: -257456.075339 EM: Round [130] log likelihood: -257456.074661 EM: Round [131] log likelihood: -257456.073996 EM: Round [132] log likelihood: -257456.073344 EM: Round [133] log likelihood: -257456.072704 EM: Round [134] log likelihood: -257456.072076 EM: Round [135] log likelihood: -257456.071460 EM: Round [136] log likelihood: -257456.070855 EM: Round [137] log likelihood: -257456.070261 EM: Round [138] log likelihood: -257456.069678 EM: Round [139] log likelihood: -257456.069104 EM: Round [140] log likelihood: -257456.068540 EM: Round [141] log likelihood: -257456.067986 EM: Round [142] log likelihood: -257456.067440 EM: Round [143] log likelihood: -257456.066904 EM: Round [144] log likelihood: -257456.066376 EM: Round [145] log likelihood: -257456.065856 EM: Round [146] log likelihood: -257456.065344 EM: Round [147] log likelihood: -257456.064840 EM: Round [148] log likelihood: -257456.064343 EM: Round [149] log likelihood: -257456.063853 EM: Round [150] log likelihood: -257456.063371 EM: Round [151] log likelihood: -257456.062896 EM: Round [152] log likelihood: -257456.062427 EM: Round [153] log likelihood: -257456.061964 EM: Round [154] log likelihood: -257456.061508 EM: Round [155] log likelihood: -257456.061058 EM: Round [156] log likelihood: -257456.060614 EM: Round [157] log likelihood: -257456.060176 EM: Round [158] log likelihood: -257456.059743 EM: Round [159] log likelihood: -257456.059316 EM: Round [160] log likelihood: -257456.058894 EM: Round [161] log likelihood: -257456.058477 EM: Round [162] log likelihood: -257456.058065 EM: Round [163] log likelihood: -257456.057659 EM: Round [164] log likelihood: -257456.057257 EM: Round [165] log likelihood: -257456.056859 EM: Round [166] log likelihood: -257456.056467 EM: Round [167] log likelihood: -257456.056079 EM: Round [168] log likelihood: -257456.055695 EM: Round [169] log likelihood: -257456.055315 EM: Round [170] log likelihood: -257456.054940 EM: Round [171] log likelihood: -257456.054569 EM: Round [172] log likelihood: -257456.054202 EM: Round [173] log likelihood: -257456.053838 EM: Round [174] log likelihood: -257456.053479 EM: Round [175] log likelihood: -257456.053123 EM: Round [176] log likelihood: -257456.052771 EM: Round [177] log likelihood: -257456.052423 EM: Round [178] log likelihood: -257456.052078 EM: Round [179] log likelihood: -257456.051736 EM: Round [180] log likelihood: -257456.051398 EM: Round [181] log likelihood: -257456.051064 EM: Round [182] log likelihood: -257456.050732 EM: Round [183] log likelihood: -257456.050404 EM: Round [184] log likelihood: -257456.050079 EM: Round [185] log likelihood: -257456.049758 EM: Round [186] log likelihood: -257456.049439 EM: Round [187] log likelihood: -257456.049123 EM: Round [188] log likelihood: -257456.048810 EM: Round [189] log likelihood: -257456.048501 EM: Round [190] log likelihood: -257456.048194 EM: Round [191] log likelihood: -257456.047889 EM: Round [192] log likelihood: -257456.047588 EM: Round [193] log likelihood: -257456.047289 EM: Round [194] log likelihood: -257456.046993 EM: Round [195] log likelihood: -257456.046700 EM: Round [196] log likelihood: -257456.046410 EM: Round [197] log likelihood: -257456.046122 EM: Round [198] log likelihood: -257456.045836 EM: Round [199] log likelihood: -257456.045553 EM: Round [200] log likelihood: -257456.045273 EM: Round [201] log likelihood: -257456.044995 EM: Round [202] log likelihood: -257456.044719 EM: Round [203] log likelihood: -257456.044446 EM: Round [204] log likelihood: -257456.044175 EM: Round [205] log likelihood: -257456.043906 EM: Round [206] log likelihood: -257456.043640 EM: Round [207] log likelihood: -257456.043376 EM: Round [208] log likelihood: -257456.043115 EM: Round [209] log likelihood: -257456.042855 EM: Round [210] log likelihood: -257456.042598 EM: Round [211] log likelihood: -257456.042343 EM: Round [212] log likelihood: -257456.042090 EM: Round [213] log likelihood: -257456.041839 EM: Round [214] log likelihood: -257456.041590 EM: Round [215] log likelihood: -257456.041344 EM: Round [216] log likelihood: -257456.041099 EM: Round [217] log likelihood: -257456.040857 EM: Round [218] log likelihood: -257456.040616 EM: Round [219] log likelihood: -257456.040378 EM: Round [220] log likelihood: -257456.040141 EM: Round [221] log likelihood: -257456.039906 EM: Round [222] log likelihood: -257456.039674 EM: Round [223] log likelihood: -257456.039443 EM: Round [224] log likelihood: -257456.039214 EM: Round [225] log likelihood: -257456.038987 EM: Round [226] log likelihood: -257456.038762 EM: Round [227] log likelihood: -257456.038539 EM: Round [228] log likelihood: -257456.038317 EM: Round [229] log likelihood: -257456.038098 EM: Round [230] log likelihood: -257456.037880 EM: Round [231] log likelihood: -257456.037664 EM: Round [232] log likelihood: -257456.037450 EM: Round [233] log likelihood: -257456.037237 EM: Round [234] log likelihood: -257456.037026 EM: Round [235] log likelihood: -257456.036817 EM: Round [236] log likelihood: -257456.036610 EM: Round [237] log likelihood: -257456.036404 EM: Round [238] log likelihood: -257456.036200 EM: Round [239] log likelihood: -257456.035998 EM: Round [240] log likelihood: -257456.035797 EM: Round [241] log likelihood: -257456.035598 EM: Round [242] log likelihood: -257456.035401 EM: Round [243] log likelihood: -257456.035205 EM: Round [244] log likelihood: -257456.035010 EM: Round [245] log likelihood: -257456.034818 EM: Round [246] log likelihood: -257456.034627 EM: Round [247] log likelihood: -257456.034437 EM: Round [248] log likelihood: -257456.034249 EM: Round [249] log likelihood: -257456.034063 EM: Round [250] log likelihood: -257456.033878 EM: Round [251] log likelihood: -257456.033694 EM: Round [252] log likelihood: -257456.033512 EM: Round [253] log likelihood: -257456.033332 EM: Round [254] log likelihood: -257456.033153 EM: Round [255] log likelihood: -257456.032975 EM: Round [256] log likelihood: -257456.032799 EM: Round [257] log likelihood: -257456.032624 EM: Round [258] log likelihood: -257456.032451 EM: Round [259] log likelihood: -257456.032279 EM: Round [260] log likelihood: -257456.032109 EM: Round [261] log likelihood: -257456.031940 EM: Round [262] log likelihood: -257456.031772 EM: Round [263] log likelihood: -257456.031606 EM: Round [264] log likelihood: -257456.031441 EM: Round [265] log likelihood: -257456.031277 EM: Round [266] log likelihood: -257456.031115 EM: Round [267] log likelihood: -257456.030954 EM: Round [268] log likelihood: -257456.030795 EM: Round [269] log likelihood: -257456.030636 EM: Round [270] log likelihood: -257456.030479 EM: Round [271] log likelihood: -257456.030324 EM: Round [272] log likelihood: -257456.030169 EM: Round [273] log likelihood: -257456.030016 EM: Round [274] log likelihood: -257456.029864 EM: Round [275] log likelihood: -257456.029713 EM: Round [276] log likelihood: -257456.029564 EM: Round [277] log likelihood: -257456.029416 EM: Round [278] log likelihood: -257456.029269 EM: Round [279] log likelihood: -257456.029123 EM: Round [280] log likelihood: -257456.028979 EM: Round [281] log likelihood: -257456.028835 EM: Round [282] log likelihood: -257456.028693 EM: Round [283] log likelihood: -257456.028552 EM: Round [284] log likelihood: -257456.028412 EM: Round [285] log likelihood: -257456.028274 EM: Round [286] log likelihood: -257456.028136 EM: Round [287] log likelihood: -257456.028000 EM: Round [288] log likelihood: -257456.027865 EM: Round [289] log likelihood: -257456.027731 EM: Round [290] log likelihood: -257456.027598 EM: Round [291] log likelihood: -257456.027466 EM: Round [292] log likelihood: -257456.027335 EM: Round [293] log likelihood: -257456.027206 EM: Round [294] log likelihood: -257456.027077 EM: Round [295] log likelihood: -257456.026949 EM: Round [296] log likelihood: -257456.026823 EM: Round [297] log likelihood: -257456.026698 EM: Round [298] log likelihood: -257456.026573 EM: Round [299] log likelihood: -257456.026450 EM: Round [300] log likelihood: -257456.026328 EM: Round [301] log likelihood: -257456.026207 EM: Round [302] log likelihood: -257456.026086 EM: Round [303] log likelihood: -257456.025967 EM: Round [304] log likelihood: -257456.025849 EM: Round [305] log likelihood: -257456.025732 EM: Round [306] log likelihood: -257456.025616 EM: Round [307] log likelihood: -257456.025500 EM: Round [308] log likelihood: -257456.025386 EM: Round [309] log likelihood: -257456.025273 EM: Round [310] log likelihood: -257456.025160 EM: Round [311] log likelihood: -257456.025049 EM: Round [312] log likelihood: -257456.024939 EM: Round [313] log likelihood: -257456.024829 EM: Round [314] log likelihood: -257456.024721 EM: Round [315] log likelihood: -257456.024613 EM: Round [316] log likelihood: -257456.024506 EM: Round [317] log likelihood: -257456.024400 EM: Round [318] log likelihood: -257456.024295 EM: Round [319] log likelihood: -257456.024191 EM: Round [320] log likelihood: -257456.024088 EM: Round [321] log likelihood: -257456.023986 EM: Round [322] log likelihood: -257456.023885 EM: Round [323] log likelihood: -257456.023784 EM: Round [324] log likelihood: -257456.023685 EM: Stopping iterations at round 324 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 107772690 > /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir > /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir --annotate /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir -done, see /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 623, filtered: 7098) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.aurR0ltUyV/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.aurR0ltUyV/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000229739.4] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000281103.2] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000253302.1] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000287721.1] WARNING, no entry stored in dbm for [ENSG00000241316.8] WARNING, no entry stored in dbm for [ENSG00000271538.6] WARNING, no entry stored in dbm for [ENSG00000181943.5] WARNING, no entry stored in dbm for [ENSG00000251136.9] WARNING, no entry stored in dbm for [ENSG00000267291.1] WARNING, no entry stored in dbm for [ENSG00000276758.1] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000248231.1] WARNING, no entry stored in dbm for [ENSG00000256508.2] WARNING, no entry stored in dbm for [ENSG00000168405.17] WARNING, no entry stored in dbm for [ENSG00000270855.1] WARNING, no entry stored in dbm for [ENSG00000285848.1] WARNING, no entry stored in dbm for [ENSG00000213184.3] WARNING, no entry stored in dbm for [ENSG00000276805.2] WARNING, no entry stored in dbm for [ENSG00000280828.1] WARNING, no entry stored in dbm for [ENSG00000241313.3] WARNING, no entry stored in dbm for [ENSG00000260037.5] WARNING, no entry stored in dbm for [ENSG00000239268.3] WARNING, no entry stored in dbm for [ENSG00000229956.11] WARNING, no entry stored in dbm for [ENSG00000229140.11] WARNING, no entry stored in dbm for [ENSG00000234420.7] WARNING, no entry stored in dbm for [ENSG00000266821.1] WARNING, no entry stored in dbm for [ENSG00000279217.1] WARNING, no entry stored in dbm for [ENSG00000272848.2] WARNING, no entry stored in dbm for [ENSG00000232354.8] WARNING, no entry stored in dbm for [ENSG00000278060.1] WARNING, no entry stored in dbm for [ENSG00000286572.1] WARNING, no entry stored in dbm for [ENSG00000237679.2] WARNING, no entry stored in dbm for [ENSG00000223756.7] WARNING, no entry stored in dbm for [ENSG00000226383.7] WARNING, no entry stored in dbm for [ENSG00000186825.6] WARNING, no entry stored in dbm for [ENSG00000214559.3] WARNING, no entry stored in dbm for [ENSG00000259057.1] WARNING, no entry stored in dbm for [ENSG00000240549.2] WARNING, no entry stored in dbm for [ENSG00000180714.3] WARNING, no entry stored in dbm for [ENSG00000241163.8] WARNING, no entry stored in dbm for [ENSG00000261241.7] WARNING, no entry stored in dbm for [ENSG00000283907.1] WARNING, no entry stored in dbm for [ENSG00000282572.2] WARNING, no entry stored in dbm for [ENSG00000277739.1] WARNING, no entry stored in dbm for [ENSG00000283568.1] WARNING, no entry stored in dbm for [ENSG00000261469.1] WARNING, no entry stored in dbm for [ENSG00000163597.15] WARNING, no entry stored in dbm for [ENSG00000236961.1] WARNING, no entry stored in dbm for [ENSG00000233575.2] WARNING, no entry stored in dbm for [ENSG00000225138.8] WARNING, no entry stored in dbm for [ENSG00000251600.8] WARNING, no entry stored in dbm for [ENSG00000201894.1] WARNING, no entry stored in dbm for [ENSG00000196312.15] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000285867.1] WARNING, no entry stored in dbm for [ENSG00000213935.3] WARNING, no entry stored in dbm for [ENSG00000241129.3] WARNING, no entry stored in dbm for [ENSG00000225470.8] WARNING, no entry stored in dbm for [ENSG00000222678.1] WARNING, no entry stored in dbm for [ENSG00000251635.2] WARNING, no entry stored in dbm for [ENSG00000232354.8] WARNING, no entry stored in dbm for [ENSG00000278231.1] WARNING, no entry stored in dbm for [ENSG00000207955.5] WARNING, no entry stored in dbm for [ENSG00000224368.1] WARNING, no entry stored in dbm for [ENSG00000224368.1] WARNING, no entry stored in dbm for [ENSG00000273125.2] WARNING, no entry stored in dbm for [ENSG00000228264.1] WARNING, no entry stored in dbm for [ENSG00000223705.9] WARNING, no entry stored in dbm for [ENSG00000263317.1] WARNING, no entry stored in dbm for [ENSG00000235531.11] WARNING, no entry stored in dbm for [ENSG00000281731.3] WARNING, no entry stored in dbm for [ENSG00000223396.4] WARNING, no entry stored in dbm for [ENSG00000262879.6] WARNING, no entry stored in dbm for [ENSG00000274354.1] WARNING, no entry stored in dbm for [ENSG00000286295.1] WARNING, no entry stored in dbm for [ENSG00000259763.2] WARNING, no entry stored in dbm for [ENSG00000237339.5] WARNING, no entry stored in dbm for [ENSG00000204588.5] WARNING, no entry stored in dbm for [ENSG00000279182.1] WARNING, no entry stored in dbm for [ENSG00000204588.5] WARNING, no entry stored in dbm for [ENSG00000279182.1] WARNING, no entry stored in dbm for [ENSG00000241769.7] WARNING, no entry stored in dbm for [ENSG00000203721.7] WARNING, no entry stored in dbm for [ENSG00000214851.5] WARNING, no entry stored in dbm for [ENSG00000229437.2] WARNING, no entry stored in dbm for [ENSG00000223768.2] WARNING, no entry stored in dbm for [ENSG00000226097.6] WARNING, no entry stored in dbm for [ENSG00000233930.4] WARNING, no entry stored in dbm for [ENSG00000286948.1] WARNING, no entry stored in dbm for [ENSG00000232710.1] WARNING, no entry stored in dbm for [ENSG00000269821.1] WARNING, no entry stored in dbm for [ENSG00000228818.1] WARNING, no entry stored in dbm for [ENSG00000271943.2] WARNING, no entry stored in dbm for [ENSG00000254266.6] WARNING, no entry stored in dbm for [ENSG00000237424.1] WARNING, no entry stored in dbm for [ENSG00000226539.1] WARNING, no entry stored in dbm for [ENSG00000258018.2] WARNING, no entry stored in dbm for [ENSG00000234945.8] WARNING, no entry stored in dbm for [ENSG00000214433.4] WARNING, no entry stored in dbm for [ENSG00000239533.6] WARNING, no entry stored in dbm for [ENSG00000240787.1] WARNING, no entry stored in dbm for [ENSG00000227902.2] WARNING, no entry stored in dbm for [ENSG00000226777.7] WARNING, no entry stored in dbm for [ENSG00000235618.8] WARNING, no entry stored in dbm for [ENSG00000227954.7] WARNING, no entry stored in dbm for [ENSG00000221891.2] WARNING, no entry stored in dbm for [ENSG00000231841.1] WARNING, no entry stored in dbm for [ENSG00000277739.1] WARNING, no entry stored in dbm for [ENSG00000235142.10] WARNING, no entry stored in dbm for [ENSG00000093100.13] WARNING, no entry stored in dbm for [ENSG00000224032.7] WARNING, no entry stored in dbm for [ENSG00000262580.5] WARNING, no entry stored in dbm for [ENSG00000225361.4] WARNING, no entry stored in dbm for [ENSG00000230239.1] WARNING, no entry stored in dbm for [ENSG00000261790.2] WARNING, no entry stored in dbm for [ENSG00000244306.11] WARNING, no entry stored in dbm for [ENSG00000259637.1] WARNING, no entry stored in dbm for [ENSG00000236948.2] WARNING, no entry stored in dbm for [ENSG00000244300.3] WARNING, no entry stored in dbm for [ENSG00000215386.13] WARNING, no entry stored in dbm for [ENSG00000264063.1] WARNING, no entry stored in dbm for [ENSG00000234817.2] WARNING, no entry stored in dbm for [ENSG00000260492.3] WARNING, no entry stored in dbm for [ENSG00000225270.1] WARNING, no entry stored in dbm for [ENSG00000237949.2] WARNING, no entry stored in dbm for [ENSG00000257842.6] WARNING, no entry stored in dbm for [ENSG00000287243.2] WARNING, no entry stored in dbm for [ENSG00000230091.6] WARNING, no entry stored in dbm for [ENSG00000256030.1] WARNING, no entry stored in dbm for [ENSG00000258975.1] WARNING, no entry stored in dbm for [ENSG00000246627.6] WARNING, no entry stored in dbm for [ENSG00000280401.1] WARNING, no entry stored in dbm for [ENSG00000234996.4] WARNING, no entry stored in dbm for [ENSG00000282317.1] WARNING, no entry stored in dbm for [ENSG00000261286.1] WARNING, no entry stored in dbm for [ENSG00000266373.1] WARNING, no entry stored in dbm for [ENSG00000264964.2] WARNING, no entry stored in dbm for [ENSG00000215895.4] WARNING, no entry stored in dbm for [ENSG00000218418.2] WARNING, no entry stored in dbm for [ENSG00000254605.1] WARNING, no entry stored in dbm for [ENSG00000235582.2] WARNING, no entry stored in dbm for [ENSG00000215016.2] WARNING, no entry stored in dbm for [ENSG00000279124.1] WARNING, no entry stored in dbm for [ENSG00000228430.9] WARNING, no entry stored in dbm for [ENSG00000230490.3] WARNING, no entry stored in dbm for [ENSG00000220685.3] WARNING, no entry stored in dbm for [ENSG00000234961.1] WARNING, no entry stored in dbm for [ENSG00000206629.1] WARNING, no entry stored in dbm for [ENSG00000227220.1] WARNING, no entry stored in dbm for [ENSG00000236166.1] WARNING, no entry stored in dbm for [ENSG00000259116.2] WARNING, no entry stored in dbm for [ENSG00000250135.1] WARNING, no entry stored in dbm for [ENSG00000288543.1] WARNING, no entry stored in dbm for [ENSG00000230912.1] WARNING, no entry stored in dbm for [ENSG00000255750.6] WARNING, no entry stored in dbm for [ENSG00000234936.1] WARNING, no entry stored in dbm for [ENSG00000235529.1] WARNING, no entry stored in dbm for [ENSG00000286687.1] WARNING, no entry stored in dbm for [ENSG00000223958.1] WARNING, no entry stored in dbm for [ENSG00000281741.2] WARNING, no entry stored in dbm for [ENSG00000246596.7] WARNING, no entry stored in dbm for [ENSG00000279827.1] WARNING, no entry stored in dbm for [ENSG00000265298.1] WARNING, no entry stored in dbm for [ENSG00000214999.3] WARNING, no entry stored in dbm for [ENSG00000284675.1] WARNING, no entry stored in dbm for [ENSG00000277332.1] WARNING, no entry stored in dbm for [ENSG00000251314.2] WARNING, no entry stored in dbm for [ENSG00000224818.1] WARNING, no entry stored in dbm for [ENSG00000284968.1] WARNING, no entry stored in dbm for [ENSG00000284687.1] WARNING, no entry stored in dbm for [ENSG00000248618.1] WARNING, no entry stored in dbm for [ENSG00000262136.1] WARNING, no entry stored in dbm for [ENSG00000253107.1] WARNING, no entry stored in dbm for [ENSG00000204055.5] WARNING, no entry stored in dbm for [ENSG00000253107.1] WARNING, no entry stored in dbm for [ENSG00000204055.5] WARNING, no entry stored in dbm for [ENSG00000253107.1] WARNING, no entry stored in dbm for [ENSG00000204055.5] WARNING, no entry stored in dbm for [ENSG00000264151.6] WARNING, no entry stored in dbm for [ENSG00000284627.1] WARNING, no entry stored in dbm for [ENSG00000257337.7] WARNING, no entry stored in dbm for [ENSG00000235027.1] WARNING, no entry stored in dbm for [ENSG00000284847.1] WARNING, no entry stored in dbm for [ENSG00000234638.1] WARNING, no entry stored in dbm for [ENSG00000259945.1] WARNING, no entry stored in dbm for [ENSG00000259945.1] WARNING, no entry stored in dbm for [ENSG00000259945.1] WARNING, no entry stored in dbm for [ENSG00000267040.6] WARNING, no entry stored in dbm for [ENSG00000263276.1] WARNING, no entry stored in dbm for [ENSG00000269032.1] WARNING, no entry stored in dbm for [ENSG00000223508.5] WARNING, no entry stored in dbm for [ENSG00000249406.3] WARNING, no entry stored in dbm for [ENSG00000259349.2] WARNING, no entry stored in dbm for [ENSG00000280007.1] WARNING, no entry stored in dbm for [ENSG00000259106.1] * STAR-Fusion complete. See output: /tmp/nxf.aurR0ltUyV/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)