File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/6ae1b7a15d34f62dce429a4639b223/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:26:39
                             Started mapping on |	Jun 08 10:33:14
                                    Finished on |	Jun 08 11:22:10
       Mapping speed, Million of reads per hour |	351.51

                          Number of input reads |	286677334
                      Average input read length |	219
                                    UNIQUE READS:
                   Uniquely mapped reads number |	264699900
                        Uniquely mapped reads % |	92.33%
                          Average mapped length |	218.82
                       Number of splices: Total |	241676588
            Number of splices: Annotated (sjdb) |	238274101
                       Number of splices: GT/AG |	238818172
                       Number of splices: GC/AG |	1513901
                       Number of splices: AT/AC |	232517
               Number of splices: Non-canonical |	1111998
                      Mismatch rate per base, % |	0.27%
                         Deletion rate per base |	0.03%
                        Deletion average length |	1.79
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.66
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	16969591
             % of reads mapped to multiple loci |	5.92%
        Number of reads mapped to too many loci |	883161
             % of reads mapped to too many loci |	0.31%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3608643
                 % of reads unmapped: too short |	1.26%
                Number of reads unmapped: other |	516039
                     % of reads unmapped: other |	0.18%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%