File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/d6e710b3e417686bb7620b5f0ced26/.command.log
Size
359.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:MULTIQC
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/10b3229c0fd97f0b24cd0c3d1e4474/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_2.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/69c393657b8c3a086c3f29cce01de4/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d9/e0e70c711de6851180c8125adaa2e6/1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1.inner_distance_freq.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c7/b648da8e673e119e44dd4b42d89f32/1173_H2E_T1_RNA_SLD_01_A23T55JLT4_2.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/74/3fb47f78a28e676cbfd80215a154d8/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2_trimmed_1_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5a/a7e50d2af9837b4df4110aaa067608/1173_M2F_T1_RNA_SLD_01_A23T55JLT4_1.log
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3e/be4a5633ec1059f85deb77d81a2bbe/1173_SK8_T1_RNA_SLD_01_A23T55JLT4_2_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fd/135cbf0fbd104c3fb96748f5e9739c/1173_T46_T1_RNA_SLD_01_A23T55JLT4_2_kallisto_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6e/64489c201b8bd3ff87ae365f926808/1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/7e9bfc877df749a4cb6f466fd0de3c/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_2.fastp.json
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9e/7a8790d253bc37cd250402a3a590d0/1173_PCB_T1_RNA_SLD_01_A23T55JLT4_2.md.bam.metrics
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/7c741ef2730db80098a57989b80641/1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/24493b9ba52eb30a771ad1f7c37624/1173_CH0_T1_RNA_SLD_01_A23T55JLT4_1.md.bam.metrics
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/8128f057779a4dc8dc270f2bea9fe1/1173_NMN_T1_RNA_SLD_01_A23T55JLT4_2_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/65/32bdbb64269dfc653988e26f2a2c0d/1173_M5U_T1_RNA_SLD_01_A23T55JLT4_1.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9a/64c9dda2fe3b75f9e6da0549e9e853/FFPE_V4_0002_RNA_0001_A23T55JLT4_1.md.bam.metrics
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a4/a0be9c5364f888a5bb6479a3131ed4/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1_trimmed_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/ee75d1017e24837de2084042b7f8c6/1173_GFO_T1_RNA_SLD_01_A23T55JLT4_2.infer_experiment.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/a2f8817505e53d6b1b37619293846d/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/71aa51c02901823784df9016c4dbe6/1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1_2_fastqc.zip
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f8/7e002d04d1f56c679863a4d21ef25b/1173_M2F_T1_RNA_SLD_01_A23T55JLT4_1.junctionSaturation_plot.r
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/6ca531a4e9180d71f191e9300642d9/1173_M4Y_T1_RNA_SLD_01_A23T55JLT4_1_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/5dd198ab79bbd12bc5cc003ad8046f/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_1_combined_fusions_arriba_visualisation.pdf
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/65328bba58bb09b4e1a452706972f8/1173_RQT_T1_RNA_SLD_01_A23T55JLT4_2.pos.DupRate.xls
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/6450f162e07bc655bd758f8c4eeca4/1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.read_distribution.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3a/d49e14e5f60ac6fa23bea4d885ec5e/1173_GFO_T1_RNA_SLD_01_A23T55JLT4_1.ReadsPerGene.out.tab
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/41/e5d4dbaa001febec5d23d23469a731/1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1_seqtool_mqc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/7be5d61b8ef25f06f0ec8d6d2757e3/1173_KQG_T1_RNA_SLD_01_A23T55JLT4_1_2_fastqc.zip
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/d9d56014061ac75118ca8580b7a0c2/1173_MHK_T1_RNA_SLD_01_A23T55JLT4_1.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/45892abad8f7c0a889a0c33bcf9c5a/1173_JLC_T1_RNA_SLD_01_A23T55JLT4_2.junctionSaturation_plot.r
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c0/a1acc83cfc6dda8e0433390e7d6b85/1173_QJL_T1_RNA_SLD_01_A23T55JLT4_1_1_fastqc.zip
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/ebf11480913cac5d1f303f8891424e/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.bam_stat.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/8cce9acd6b906a1647cde72c28b3eb/1173_JXL_T1_RNA_SLD_01_A23T55JLT4_1.fastp.html
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/31/c90d7a4c898905d24f0a6ec4973541/1173_RDM_T1_RNA_SLD_01_A23T55JLT4_2.junctionSaturation_plot.r
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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/ca24b14367e71b65aca8237430d794/1173_KTN_T1_RNA_SLD_01_A23T55JLT4_1.Log.final.out
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==> STAGING COMPLETE (2396 inputs)


  /// MultiQC 🔍 | v1.21

|           multiqc | MultiQC Version v1.35 now available!
|           multiqc | Module(s) in config.run_modules are unknown: arriba
|           multiqc | Only using modules: custom_content, fastqc, fastp, star, samtools, picard, kallisto, rseqc, preseq
|           multiqc | Search path : /tmp/nxf.vHeerQZRKY
|         searching | ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 100% 2431/2431  
|    custom_content | kallisto_qc_metrics: Found 96 General Statistics columns
|    custom_content | seqtools_metrics: Found 96 General Statistics columns
|    custom_content | rseqc_extra_metrics: Found 96 General Statistics columns
|    custom_content | preseq_metrics: Found 96 General Statistics columns
|    custom_content | rna_contamination: Found 96 General Statistics columns
|    custom_content | nf-core-rnafusion-methods-description: Found 1 sample (html)
|    custom_content | nf-core-rnafusion-summary: Found 1 sample (html)
|          kallisto | Found 96 reports
|            picard | Found 96 MarkDuplicates reports
|            preseq | Found 96 reports
|             rseqc | Found 96 read_distribution reports
|             rseqc | Found 96 inner_distance reports
|             rseqc | Found 96 read_duplication reports
|             rseqc | Found 96 junction_annotation reports
|             rseqc | Found 96 junction_saturation reports
|             rseqc | Found 96 infer_experiment reports
|             rseqc | Found 96 bam_stat reports
|              star | Found 96 reports and 96 gene count files
|             fastp | Found 96 reports
|            fastqc | Found 384 reports
|            fastqc | Found 192 reports
|           multiqc | Report      : multiqc_report.html
|           multiqc | Data        : multiqc_data
|           multiqc | Plots       : multiqc_plots
|           multiqc | MultiQC complete