Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/faf713aa7f9b598e8a66046a6c5c9c/1173_CI9_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/a88abb91d8ce4fe239f6aa876b6d23/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/a88abb91d8ce4fe239f6aa876b6d23/.command.run
==> STAGING COMPLETE (3 inputs)

PAIRED_END_BAM_INPUT
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paired = 241076352
unpaired = 4673372
MERGED PAIRED END READS = 241076352
MATES PROCESSED = 486826076
TOTAL READS     = 245749724
DISTINCT READS  = 1.09344e+08
DISTINCT COUNTS = 1068
MAX COUNT       = 1116410
COUNTS OF 1     = 6.08869e+07
MAX TERMS       = 100
OBSERVED COUNTS (1116411)
1	60886946
2	24258552
3	10513261
4	5037546
5	2690971
6	1587305
7	1015662
8	690594
9	494124
10	365007
11	278156
12	218515
13	174742
14	141153
15	116383
16	96980
17	81901
18	69043
19	59729
20	51369
21	44919
22	39105
23	34145
24	30558
25	27283
26	24270
27	21723
28	19545
29	17728
30	16026
31	14596
32	13195
33	12177
34	11146
35	10201
36	9367
37	8726
38	8119
39	7584
40	6907
41	6334
42	6022
43	5671
44	5180
45	5005
46	4678
47	4426
48	4038
49	3942
50	3605
51	3393
52	3220
53	3099
54	2974
55	2720
56	2581
57	2475
58	2327
59	2153
60	2101
61	1950
62	1967
63	1797
64	1788
65	1718
66	1600
67	1480
68	1516
69	1443
70	1311
71	1240
72	1252
73	1198
74	1066
75	1108
76	1069
77	962
78	942
79	914
80	896
81	868
82	862
83	815
84	741
85	731
86	714
87	632
88	689
89	693
90	692
91	659
92	567
93	583
94	559
95	564
96	493
97	517
98	453
99	483
100	466
101	438
102	481
103	434
104	401
105	398
106	379
107	381
108	354
109	353
110	335
111	327
112	321
113	350
114	325
115	342
116	278
117	310
118	307
119	275
120	282
121	263
122	282
123	233
124	225
125	234
126	242
127	238
128	225
129	210
130	195
131	213
132	207
133	219
134	200
135	188
136	168
137	193
138	180
139	190
140	169
141	156
142	152
143	138
144	168
145	158
146	143
147	145
148	156
149	144
150	125
151	151
152	123
153	128
154	134
155	123
156	118
157	122
158	142
159	114
160	120
161	120
162	111
163	90
164	99
165	102
166	100
167	98
168	99
169	93
170	104
171	91
172	90
173	88
174	79
175	93
176	90
177	75
178	89
179	82
180	87
181	79
182	60
183	68
184	89
185	79
186	93
187	69
188	67
189	48
190	57
191	72
192	64
193	73
194	57
195	65
196	73
197	61
198	55
199	48
200	64
201	55
202	56
203	61
204	50
205	53
206	63
207	56
208	69
209	59
210	56
211	60
212	47
213	46
214	47
215	53
216	45
217	57
218	33
219	52
220	46
221	35
222	31
223	44
224	31
225	46
226	48
227	28
228	43
229	44
230	35
231	42
232	39
233	37
234	37
235	29
236	32
237	40
238	47
239	29
240	34
241	30
242	37
243	25
244	30
245	26
246	32
247	29
248	29
249	24
250	27
251	32
252	26
253	24
254	29
255	27
256	25
257	26
258	24
259	15
260	23
261	21
262	18
263	26
264	27
265	22
266	26
267	18
268	30
269	33
270	21
271	24
272	22
273	35
274	22
275	19
276	25
277	21
278	22
279	22
280	28
281	21
282	16
283	25
284	19
285	14
286	17
287	23
288	19
289	10
290	17
291	16
292	14
293	26
294	18
295	27
296	15
297	25
298	16
299	16
300	20
301	25
302	18
303	20
304	16
305	21
306	19
307	14
308	10
309	12
310	11
311	25
312	10
313	10
314	17
315	15
316	15
317	12
318	14
319	12
320	12
321	8
322	10
323	19
324	8
325	15
326	20
327	21
328	14
329	19
330	15
331	10
332	17
333	14
334	12
335	11
336	16
337	9
338	10
339	13
340	13
341	12
342	6
343	11
344	18
345	15
346	12
347	7
348	8
349	11
350	14
351	10
352	6
353	9
354	11
355	10
356	9
357	3
358	12
359	10
360	8
361	10
362	14
363	10
364	9
365	4
366	11
367	6
368	7
369	15
370	13
371	12
372	9
373	7
374	9
375	10
376	4
377	7
378	3
379	8
380	14
381	12
382	8
383	10
384	9
385	12
386	4
387	9
388	9
389	10
390	6
391	9
392	5
393	8
394	6
395	8
396	3
397	2
398	11
399	11
400	11
401	5
402	10
403	11
404	13
405	7
406	14
407	7
408	9
409	8
410	9
411	8
412	9
413	5
414	4
415	4
416	3
417	6
418	8
419	5
420	5
421	5
422	6
423	6
424	7
425	3
426	8
427	8
428	2
429	3
430	7
431	5
432	3
433	14
434	6
435	4
436	5
437	2
438	5
439	6
440	8
441	8
442	6
443	8
444	7
445	5
446	6
447	8
448	5
449	9
450	6
451	9
452	7
453	5
454	4
455	10
456	11
457	6
458	7
459	5
460	5
461	3
462	4
463	3
464	5
465	6
466	3
467	9
468	3
469	4
470	4
471	4
472	7
473	3
474	12
475	3
476	4
477	2
478	4
479	3
480	4
481	9
482	4
483	5
484	1
485	5
486	5
487	3
488	5
489	4
490	4
492	7
493	4
494	3
495	7
496	1
497	5
498	2
499	5
500	4
501	5
502	4
503	5
505	3
506	3
507	3
508	7
509	7
510	5
511	3
513	6
514	1
515	5
516	6
517	5
518	1
519	2
520	3
521	5
522	2
523	6
524	3
525	1
526	2
527	6
528	6
529	5
530	5
531	5
532	1
533	2
534	5
535	1
536	1
537	1
538	2
539	1
540	3
541	4
542	1
543	5
545	2
546	4
547	3
548	1
549	4
550	1
551	2
552	2
553	7
554	1
555	3
556	5
557	1
558	1
559	2
560	3
561	5
562	2
563	2
564	1
565	3
566	4
567	1
568	3
569	3
570	2
571	4
572	3
573	3
575	4
576	1
577	1
578	3
579	3
580	2
582	4
583	1
584	5
585	6
587	6
588	2
589	3
591	1
592	1
593	1
594	3
595	4
596	1
597	2
598	4
599	2
600	6
601	2
602	1
604	4
606	3
607	3
608	1
609	3
610	2
611	1
612	2
613	4
614	1
615	4
616	4
617	2
619	1
620	3
621	4
622	1
623	1
624	2
625	2
626	3
627	4
628	1
629	3
631	3
632	1
633	6
634	1
635	2
636	1
637	2
639	2
640	1
642	2
643	2
644	3
645	2
646	2
647	2
649	1
650	2
651	1
652	1
653	2
654	1
656	4
657	7
658	2
659	1
661	1
663	3
665	1
666	2
667	2
668	3
669	2
670	1
671	1
672	1
673	1
674	1
675	1
679	1
680	3
681	1
682	1
683	1
684	1
685	1
687	3
688	1
690	2
692	2
693	3
694	1
695	2
696	2
697	2
698	4
699	1
701	1
702	1
703	1
705	2
706	2
708	1
710	1
711	2
712	1
715	1
716	2
717	4
718	2
719	2
721	3
722	3
723	1
724	3
725	1
727	2
728	4
730	2
731	1
732	2
733	1
734	1
735	1
736	2
739	1
740	2
742	1
743	2
744	1
745	2
746	1
748	1
750	1
751	2
753	1
754	1
755	1
756	2
758	1
759	3
760	2
761	1
762	2
763	1
764	1
766	2
769	2
771	1
772	2
776	2
777	3
779	2
780	2
781	1
782	2
783	2
784	1
785	1
786	1
787	2
788	2
789	1
795	1
796	1
800	1
801	1
803	2
804	1
805	2
806	1
810	2
811	2
812	1
814	1
815	1
816	1
817	1
818	1
819	1
820	1
821	1
822	1
824	4
826	2
827	2
828	1
831	2
832	1
834	1
838	1
839	1
842	1
846	2
847	1
850	1
852	1
854	1
859	1
860	2
865	1
867	1
868	2
869	1
870	1
872	3
873	1
874	1
875	3
876	3
880	1
886	2
887	2
889	2
890	1
891	1
899	1
900	3
901	1
903	1
905	1
906	2
908	3
910	2
914	4
917	1
921	1
923	2
925	1
930	1
931	1
932	1
933	1
934	1
937	1
939	1
942	1
943	2
947	1
948	1
949	2
950	3
953	1
957	1
959	1
962	1
963	1
965	1
967	1
968	2
974	1
978	2
985	1
986	2
989	1
996	1
997	1
1001	2
1004	1
1007	1
1008	1
1009	1
1011	1
1012	1
1014	1
1015	1
1016	1
1018	1
1024	2
1026	1
1027	1
1030	2
1031	1
1045	3
1046	1
1048	1
1049	1
1050	2
1051	1
1052	1
1054	1
1055	1
1056	1
1057	1
1058	1
1059	1
1063	1
1072	1
1075	2
1076	1
1077	1
1081	1
1082	1
1085	1
1091	1
1096	1
1097	1
1101	1
1106	1
1110	2
1112	1
1119	1
1123	2
1126	1
1127	1
1133	1
1134	1
1137	1
1141	1
1143	1
1148	1
1149	1
1153	1
1155	1
1158	1
1164	1
1165	1
1166	1
1170	2
1171	1
1180	1
1183	1
1184	2
1185	1
1186	1
1192	2
1195	1
1197	1
1203	1
1219	1
1222	2
1226	1
1236	1
1237	1
1238	1
1239	1
1245	1
1247	1
1249	1
1256	1
1258	1
1260	1
1265	1
1268	1
1273	1
1282	1
1289	1
1293	1
1321	1
1326	1
1327	1
1328	1
1329	2
1338	1
1355	1
1356	1
1360	1
1361	1
1362	1
1366	1
1368	1
1386	1
1407	1
1409	1
1415	1
1418	1
1429	1
1430	1
1431	1
1442	1
1449	1
1453	1
1466	1
1467	2
1471	2
1474	1
1475	1
1481	1
1483	1
1488	2
1490	1
1496	1
1500	2
1505	1
1506	1
1510	1
1519	1
1521	1
1537	1
1570	1
1590	1
1622	1
1634	1
1651	1
1661	1
1670	2
1685	2
1694	1
1696	1
1704	1
1725	1
1753	1
1775	1
1784	1
1813	1
1820	1
1861	1
1881	1
1895	1
1902	1
1930	1
1955	1
1968	1
1971	2
1982	1
1999	1
2014	1
2042	1
2107	1
2140	1
2173	1
2179	1
2185	1
2223	1
2253	1
2377	1
2391	1
2415	1
2416	1
2422	1
2440	1
2453	1
2472	1
2481	1
2484	1
2523	1
2557	1
2559	1
2599	1
2611	1
2616	1
2629	1
2640	1
2641	1
2646	1
2671	1
2695	1
2712	1
2739	1
2740	1
2749	1
2753	1
2763	1
2785	1
2818	1
2849	1
2858	1
2910	1
3039	1
3042	1
3059	2
3112	1
3198	1
3207	1
3376	1
3377	2
3417	1
3472	1
3546	1
3593	1
3694	1
3797	1
3809	1
3814	1
4058	1
4324	1
4497	1
4821	1
4862	1
5321	1
5366	1
5489	1
6430	1
6844	1
7726	1
7986	1
8605	1
16504	1
19183	1
63768	1
1116410	1

[ESTIMATING YIELD CURVE]
[BOOTSTRAPPING HISTOGRAM]
...._......___.....__...._..__._.._._.__..___..__....._.....__.___._.__.
__.._..__.__._..._.....__.....___._..___.._....._._____..._.._._...._.__
__..__..._....____..._.._.
[COMPUTING CONFIDENCE INTERVALS]
[WRITING OUTPUT]