AIH curated blacklist: matched 9 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 205
Pass (FILTER=PASS): 17 (8.3%)
Fail (FILTER=FAIL): 188 (91.7%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 9
All 9 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(medium<high): 64
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 22
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 14
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 13
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 13
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 11
confidence_below_min(low<high): 9
confidence_below_min(medium<high);total_reads_below_min(7.0<8.0): 8
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 7
confidence_below_min(low<high);total_reads_below_min(7.0<8.0): 6
confidence_below_min(medium<high);aih_curated_blacklist: 6
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 3
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 3
total_reads_below_min(3.0<8.0): 2
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 2
Breakdown by confidence:
high: 17 pass, 5 fail (total: 22)
low: 0 pass, 88 fail (total: 88)
medium: 0 pass, 95 fail (total: 95)
Arriba filter: 205 rows -> 17 PASS; wrote 1173_GZ1_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered.tsv and 1173_GZ1_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filtered_pass_only.tsv
Summary written to: 1173_GZ1_T1_RNA_SLD_01_A23T55JLT4_2.arriba.fusions.filter_summary.txt