Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/9d/8463e02f1ab7ce11189da423db0c88/1173_GXL_T1_RNA_SLD_01_A23T55JLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/06aa88a9becd684a0d9f32731f849e/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/df/06aa88a9becd684a0d9f32731f849e/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory