Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/44fc74184dfba077894d5a20394681/1173_RQT_T1_RNA_SLD_01_A23T55JLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/0ca3fbf93b75292709176ad3c9835a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/0ca3fbf93b75292709176ad3c9835a/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory