File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/8b2be9b8ffe642dac349289d867715/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/41b98dba063c0d337786542db9ee95/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/8b2be9b8ffe642dac349289d867715/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/51/8b2be9b8ffe642dac349289d867715/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/216304886920d73b1d8534f885219b/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5
Successfully converted 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5 to 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1_kallisto_mqc.tsv
  Sample: 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1
  Mean Fragment Length: 118.7 bp
  Median Fragment Length: 110.0 bp
  pct_mito_est_counts: 0.028%
  pct_ribo_est_counts: 1.195%
  pct_hk_est_counts: 0.479%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.054%
  pct_ribo_tpm: 3.363%
  pct_hk_tpm: 0.701%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 0.005%