File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/c38045b6da69becc26f33990cc09c4/.command.log
Size
6.9 KB
Task
NFCORE_RNAFUSION:RNAFUSION:FUSIONREPORT_WORKFLOW:FUSIONREPORT (1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/58/791e5bfe80b6e303f7958c1f46ef58/1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/c38045b6da69becc26f33990cc09c4/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ac/c38045b6da69becc26f33990cc09c4/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/da8621108c9bb2d75e75e5e0626d5c/1173_FWA_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)

Running application...
GLG1--ZFHX3
starfusion
arriba
CAPZB--EMC1
starfusion
arriba
BRD2--ITPR3
starfusion
arriba
SMAD3--PIAS1
starfusion
arriba
PLAAT3--SLC22A10
starfusion
arriba
AMER1--ARHGEF9
starfusion
arriba
NOSTRIN--UBR3
starfusion
arriba
TLK2P1--AC110079.1
starfusion
TLK2--AC240565.1
starfusion
SUZ12P1--ADAP2
starfusion
LRP5--MYEOV
starfusion
arriba
ACADVL--MT-RNR2
starfusion
SFXN5--KNTC1
starfusion
PIK3R1--ARRDC3-AS1
starfusion
MAML1--CANX
starfusion
GUCY1B2--NKAIN2
starfusion
COX6CP1--COX6C
starfusion
TP53--FXR2
arriba
TVP23C--CDRT4
arriba
NUP98--RNU6-99P
arriba
NUP98--AC021749.1
arriba
KCNQ1--RNU6-99P
arriba
KCNQ1--AC021749.1
arriba
CRLF3--ADAP2
arriba
MFHAS1--AC090993.1
arriba
LRP5--AP003071.2
arriba
AC015911.9--SLFN12L
arriba
MAP2K1--MAP2K5
arriba
DNM1L--AC024405.1
arriba
DNM1L--OR4C50P
arriba

  0%|          | 0/30 [00:00<?, ?it/s]
Processing GLG1--ZFHX3:   0%|          | 0/30 [00:00<?, ?it/s]
Processing GLG1--ZFHX3:   3%|▎         | 1/30 [00:00<00:03,  9.22it/s]
Processing CAPZB--EMC1:   3%|▎         | 1/30 [00:00<00:03,  9.22it/s]
Processing CAPZB--EMC1:   7%|▋         | 2/30 [00:00<00:02,  9.46it/s]
Processing BRD2--ITPR3:   7%|▋         | 2/30 [00:00<00:02,  9.46it/s]
Processing BRD2--ITPR3:  10%|█         | 3/30 [00:00<00:02,  9.54it/s]
Processing SMAD3--PIAS1:  10%|█         | 3/30 [00:00<00:02,  9.54it/s]
Processing SMAD3--PIAS1:  13%|█▎        | 4/30 [00:00<00:02,  9.58it/s]
Processing PLAAT3--SLC22A10:  13%|█▎        | 4/30 [00:00<00:02,  9.58it/s]
Processing PLAAT3--SLC22A10:  17%|█▋        | 5/30 [00:00<00:02,  9.60it/s]
Processing AMER1--ARHGEF9:  17%|█▋        | 5/30 [00:00<00:02,  9.60it/s]  
Processing AMER1--ARHGEF9:  20%|██        | 6/30 [00:00<00:02,  9.61it/s]
Processing NOSTRIN--UBR3:  20%|██        | 6/30 [00:00<00:02,  9.61it/s] 
Processing NOSTRIN--UBR3:  23%|██▎       | 7/30 [00:00<00:02,  9.62it/s]
Processing TLK2P1--AC110079.1:  23%|██▎       | 7/30 [00:00<00:02,  9.62it/s]
Processing TLK2P1--AC110079.1:  27%|██▋       | 8/30 [00:00<00:02,  9.62it/s]
Processing TLK2--AC240565.1:  27%|██▋       | 8/30 [00:00<00:02,  9.62it/s]  
Processing TLK2--AC240565.1:  30%|███       | 9/30 [00:00<00:02,  9.62it/s]
Processing SUZ12P1--ADAP2:  30%|███       | 9/30 [00:00<00:02,  9.62it/s]  
Processing SUZ12P1--ADAP2:  33%|███▎      | 10/30 [00:01<00:02,  9.62it/s]
Processing LRP5--MYEOV:  33%|███▎      | 10/30 [00:01<00:02,  9.62it/s]   
Processing LRP5--MYEOV:  37%|███▋      | 11/30 [00:01<00:01,  9.63it/s]
Processing ACADVL--MT-RNR2:  37%|███▋      | 11/30 [00:01<00:01,  9.63it/s]
Processing ACADVL--MT-RNR2:  40%|████      | 12/30 [00:01<00:01,  9.63it/s]
Processing SFXN5--KNTC1:  40%|████      | 12/30 [00:01<00:01,  9.63it/s]   
Processing SFXN5--KNTC1:  43%|████▎     | 13/30 [00:01<00:01,  9.63it/s]
Processing PIK3R1--ARRDC3-AS1:  43%|████▎     | 13/30 [00:01<00:01,  9.63it/s]
Processing PIK3R1--ARRDC3-AS1:  47%|████▋     | 14/30 [00:01<00:01,  9.64it/s]
Processing MAML1--CANX:  47%|████▋     | 14/30 [00:01<00:01,  9.64it/s]       
Processing MAML1--CANX:  50%|█████     | 15/30 [00:01<00:01,  9.64it/s]
Processing GUCY1B2--NKAIN2:  50%|█████     | 15/30 [00:01<00:01,  9.64it/s]
Processing GUCY1B2--NKAIN2:  53%|█████▎    | 16/30 [00:01<00:01,  9.64it/s]
Processing COX6CP1--COX6C:  53%|█████▎    | 16/30 [00:01<00:01,  9.64it/s] 
Processing COX6CP1--COX6C:  57%|█████▋    | 17/30 [00:01<00:01,  9.64it/s]
Processing TP53--FXR2:  57%|█████▋    | 17/30 [00:01<00:01,  9.64it/s]    
Processing TP53--FXR2:  60%|██████    | 18/30 [00:01<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  60%|██████    | 18/30 [00:01<00:01,  9.64it/s]
Processing TVP23C--CDRT4:  63%|██████▎   | 19/30 [00:01<00:01,  9.64it/s]
Processing NUP98--RNU6-99P:  63%|██████▎   | 19/30 [00:01<00:01,  9.64it/s]
Processing NUP98--RNU6-99P:  67%|██████▋   | 20/30 [00:02<00:01,  9.64it/s]
Processing NUP98--AC021749.1:  67%|██████▋   | 20/30 [00:02<00:01,  9.64it/s]
Processing NUP98--AC021749.1:  70%|███████   | 21/30 [00:02<00:00,  9.64it/s]
Processing KCNQ1--RNU6-99P:  70%|███████   | 21/30 [00:02<00:00,  9.64it/s]  
Processing KCNQ1--RNU6-99P:  73%|███████▎  | 22/30 [00:02<00:00,  9.64it/s]
Processing KCNQ1--AC021749.1:  73%|███████▎  | 22/30 [00:02<00:00,  9.64it/s]
Processing KCNQ1--AC021749.1:  77%|███████▋  | 23/30 [00:02<00:00,  9.64it/s]
Processing CRLF3--ADAP2:  77%|███████▋  | 23/30 [00:02<00:00,  9.64it/s]     
Processing CRLF3--ADAP2:  80%|████████  | 24/30 [00:02<00:00,  9.64it/s]
Processing MFHAS1--AC090993.1:  80%|████████  | 24/30 [00:02<00:00,  9.64it/s]
Processing MFHAS1--AC090993.1:  83%|████████▎ | 25/30 [00:02<00:00,  9.64it/s]
Processing LRP5--AP003071.2:  83%|████████▎ | 25/30 [00:02<00:00,  9.64it/s]  
Processing LRP5--AP003071.2:  87%|████████▋ | 26/30 [00:02<00:00,  9.64it/s]
Processing AC015911.9--SLFN12L:  87%|████████▋ | 26/30 [00:02<00:00,  9.64it/s]
Processing AC015911.9--SLFN12L:  90%|█████████ | 27/30 [00:02<00:00,  9.64it/s]
Processing MAP2K1--MAP2K5:  90%|█████████ | 27/30 [00:02<00:00,  9.64it/s]     
Processing MAP2K1--MAP2K5:  93%|█████████▎| 28/30 [00:02<00:00,  9.64it/s]
Processing DNM1L--AC024405.1:  93%|█████████▎| 28/30 [00:02<00:00,  9.64it/s]
Processing DNM1L--AC024405.1:  97%|█████████▋| 29/30 [00:03<00:00,  9.64it/s]
Processing DNM1L--OR4C50P:  97%|█████████▋| 29/30 [00:03<00:00,  9.64it/s]   
Processing DNM1L--OR4C50P: 100%|██████████| 30/30 [00:03<00:00,  9.64it/s]
Processing DNM1L--OR4C50P: 100%|██████████| 30/30 [00:03<00:00,  9.62it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory