File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/6b80819f2a6de5262d0735d4c5994f/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (1173_9C_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/d5cb217a093204faef243ec37a1e9b/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1d/2843348bfef973228007448fd38815/1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/6b80819f2a6de5262d0735d4c5994f/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e3/6b80819f2a6de5262d0735d4c5994f/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 242378439
[W::hts_idx_load3] The index file is older than the data file: 1173_9C_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	242378439
Known Splicing Events:	239243602
Partial Novel Splicing Events:	1368669
Novel Splicing Events:	1699052
Filtered Splicing Events:	67116

Total splicing  Junctions:	487450
Known Splicing Junctions:	272281
Partial Novel Splicing Junctions:	141023
Novel Splicing Junctions:	74146

===================================================================
Create BED file ...
Create Interact file ...