Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/b32099c70c35f69104474cc0e4decc/1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/9e3c9389cb4fdda1388c9fd1166b3c/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5c/9e3c9389cb4fdda1388c9fd1166b3c/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/82/b32099c70c35f69104474cc0e4decc/1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/b75b2a1deee2a2bbb937514e6a4b27/1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.o2jRhoMX9S/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary
-sample contains 295992973 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir  -J /tmp/nxf.o2jRhoMX9S/1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  -O /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.o2jRhoMX9S/1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[2880000], rate=50261.78/min -building interval tree based on /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

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[2340000], rate=44123.19/min 
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[2360000], rate=44112.15/min 
[2370000], rate=44106.70/min 
[2380000], rate=44101.30/min 
[2390000], rate=44136.66/min 
[2400000], rate=44171.78/min 
[2410000], rate=44193.15/min 
[2420000], rate=44241.32/min 
[2430000], rate=44289.19/min 
[2440000], rate=44336.77/min 
[2450000], rate=44384.06/min 
[2460000], rate=44444.44/min 
[2470000], rate=44504.50/min 
[2480000], rate=44564.24/min 
[2490000], rate=44636.99/min 
[2500000], rate=44696.07/min 
[2510000], rate=44728.24/min 
[2520000], rate=44746.97/min 
[2530000], rate=44805.19/min 
[2540000], rate=44876.33/min 
[2550000], rate=44947.12/min 
[2560000], rate=45057.20/min 
[2570000], rate=45166.96/min 
[2580000], rate=45210.28/min 
[2590000], rate=45266.53/min 
[2600000], rate=45283.02/min 
[2610000], rate=45299.39/min 
[2620000], rate=45315.65/min 
[2630000], rate=45318.78/min 
[2640000], rate=45308.92/min 
[2650000], rate=45312.05/min 
[2660000], rate=45315.16/min 
[2670000], rate=45318.25/min 
[2680000], rate=45295.77/min 
[2690000], rate=45273.49/min 
[2700000], rate=45289.35/min 
[2710000], rate=45305.10/min 
[2720000], rate=45333.33/min 
[2730000], rate=45361.40/min 
[2740000], rate=45389.29/min 
[2750000], rate=45417.01/min 
[2760000], rate=45457.04/min 
[2770000], rate=45484.40/min 
[2780000], rate=45511.60/min 
[2790000], rate=45551.02/min 
[2800000], rate=45602.61/min 
[2810000], rate=45641.58/min 
[2820000], rate=45692.68/min 
[2830000], rate=45755.86/min 
[2840000], rate=45818.77/min 
[2850000], rate=45881.41/min 
[2860000], rate=45956.08/min 
[2870000], rate=46018.17/min 
[2880000], rate=46080.00/min 
[2890000], rate=46141.56/min -building interval tree based on /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=50000.00/min 
[20000], rate=46153.85/min 
[30000], rate=46153.85/min 
[40000], rate=45283.02/min 
[50000], rate=49180.33/min 
[60000], rate=50000.00/min 
[70000], rate=51851.85/min 
[80000], rate=53333.33/min 
[90000], rate=53465.35/min 
[100000], rate=54545.45/min 
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[320000], rate=63576.16/min 
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[360000], rate=64670.66/min 
[370000], rate=64912.28/min 
[380000], rate=65142.86/min 
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[570000], rate=55072.46/min 
[580000], rate=55238.10/min 
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[610000], rate=55454.55/min 
[620000], rate=55357.14/min 
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[650000], rate=55954.09/min 
[660000], rate=56250.00/min 
[670000], rate=56460.67/min 
[680000], rate=56666.67/min 
[690000], rate=57024.79/min 
[700000], rate=56987.79/min 
[710000], rate=56724.37/min 
[720000], rate=56544.50/min 
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[740000], rate=56060.61/min 
[750000], rate=55900.62/min 
[760000], rate=55813.95/min 
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[790000], rate=55503.51/min 
[800000], rate=55491.33/min 
[810000], rate=55416.19/min 
[820000], rate=55405.41/min 
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[840000], rate=55384.62/min 
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[860000], rate=55543.60/min 
[870000], rate=55472.90/min 
[880000], rate=55520.50/min 
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[910000], rate=55600.81/min 
[920000], rate=55645.16/min 
[930000], rate=55800.00/min 
[940000], rate=55952.38/min 
[950000], rate=56102.36/min 
[960000], rate=56195.12/min 
[970000], rate=56340.76/min 
[980000], rate=56484.15/min 
[990000], rate=56625.36/min 
[1000000], rate=55917.99/min 
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[1050000], rate=52066.12/min 
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[1080000], rate=50193.65/min 
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[1130000], rate=49059.33/min 
[1140000], rate=48857.14/min 
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[1160000], rate=48705.39/min 
[1170000], rate=48547.72/min 
[1180000], rate=48459.96/min 
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[1200000], rate=48387.10/min 
[1210000], rate=48432.29/min 
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[1230000], rate=47828.90/min 
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[1250000], rate=47468.35/min 
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[1300000], rate=47016.27/min 
[1310000], rate=46925.37/min 
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[1340000], rate=46798.60/min 
[1350000], rate=46929.32/min 
[1360000], rate=46869.62/min 
[1370000], rate=46731.10/min 
[1380000], rate=46647.89/min 
[1390000], rate=46722.69/min 
[1400000], rate=46408.84/min 
[1410000], rate=46330.78/min 
[1420000], rate=46254.07/min 
[1430000], rate=46203.55/min 
[1440000], rate=46153.85/min 
[1450000], rate=46129.37/min 
[1460000], rate=46129.54/min 
[1470000], rate=46105.59/min 
[1480000], rate=46105.92/min 
[1490000], rate=46106.24/min 
[1500000], rate=46082.95/min 
[1510000], rate=46083.42/min 
[1520000], rate=46107.18/min 
[1530000], rate=46153.85/min 
[1540000], rate=46315.79/min 
[1550000], rate=46384.04/min 
[1560000], rate=46474.68/min 
[1570000], rate=46541.50/min 
[1580000], rate=46630.60/min 
[1590000], rate=46718.90/min 
[1600000], rate=46806.44/min 
[1610000], rate=46893.20/min 
[1620000], rate=46843.37/min 
[1630000], rate=46350.71/min 
[1640000], rate=45810.06/min 
[1650000], rate=45371.22/min 
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[1670000], rate=44553.13/min 
[1680000], rate=44152.43/min 
[1690000], rate=43877.11/min 
[1700000], rate=43645.70/min 
[1710000], rate=43364.33/min 
[1720000], rate=43089.77/min 
[1730000], rate=42839.46/min 
[1740000], rate=42629.64/min 
[1750000], rate=42389.99/min 
[1760000], rate=42155.69/min 
[1770000], rate=42009.49/min 
[1780000], rate=41915.23/min 
[1790000], rate=41692.55/min 
[1800000], rate=41522.49/min 
[1810000], rate=41387.20/min 
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[1840000], rate=41132.64/min 
[1850000], rate=41019.96/min 
[1860000], rate=40909.09/min 
[1870000], rate=40800.00/min 
[1880000], rate=40722.02/min 
[1890000], rate=40630.60/min 
[1900000], rate=40554.96/min 
[1910000], rate=40494.70/min 
[1920000], rate=40421.05/min 
[1930000], rate=40362.50/min 
[1940000], rate=40304.71/min 
[1950000], rate=40275.39/min 
[1960000], rate=40287.77/min 
[1970000], rate=40286.30/min 
[1980000], rate=40271.19/min 
[1990000], rate=40242.67/min 
[2000000], rate=40254.95/min 
[2010000], rate=40267.11/min 
[2020000], rate=40279.16/min 
[2030000], rate=40277.78/min 
[2040000], rate=40276.41/min 
[2050000], rate=40301.44/min 
[2060000], rate=40299.97/min 
[2070000], rate=40285.44/min 
[2080000], rate=40297.06/min 
[2090000], rate=40282.69/min 
[2100000], rate=40281.33/min 
[2110000], rate=40279.99/min 
[2120000], rate=40291.42/min 
[2130000], rate=40251.97/min 
[2140000], rate=40225.56/min 
[2150000], rate=40237.06/min 
[2160000], rate=40235.95/min 
[2170000], rate=40247.30/min 
[2180000], rate=40258.54/min 
[2190000], rate=40294.39/min 
[2200000], rate=40329.97/min 
[2210000], rate=40353.01/min 
[2220000], rate=40400.36/min 
[2230000], rate=40459.63/min 
[2240000], rate=40518.54/min 
[2250000], rate=40564.90/min 
[2260000], rate=40610.96/min 
[2270000], rate=40668.86/min 
[2280000], rate=40738.53/min 
[2290000], rate=40807.84/min 
[2300000], rate=40876.78/min 
[2310000], rate=40945.35/min 
[2320000], rate=41013.55/min 
[2330000], rate=41081.40/min 
[2340000], rate=41160.95/min 
[2350000], rate=41240.13/min 
[2360000], rate=41282.80/min 
[2370000], rate=41337.21/min 
[2380000], rate=41379.31/min 
[2390000], rate=41445.09/min 
[2400000], rate=41510.52/min 
[2410000], rate=41563.67/min 
[2420000], rate=41616.51/min 
[2430000], rate=41680.96/min 
[2440000], rate=41756.99/min 
[2450000], rate=41832.67/min 
[2460000], rate=41908.01/min 
[2470000], rate=41852.58/min 
[2480000], rate=41645.68/min 
[2490000], rate=41453.94/min 
[2500000], rate=41310.93/min 
[2510000], rate=41170.04/min 
[2520000], rate=41020.08/min 
[2530000], rate=40894.40/min 
[2540000], rate=40781.38/min 
[2550000], rate=40680.67/min 
[2560000], rate=40591.97/min 
[2570000], rate=40514.98/min 
[2580000], rate=40449.44/min 
[2590000], rate=40374.12/min 
[2600000], rate=40320.50/min 
[2610000], rate=40267.42/min 
[2620000], rate=40225.18/min 
[2630000], rate=40203.82/min 
[2640000], rate=40172.46/min 
[2650000], rate=40141.38/min 
[2660000], rate=40130.75/min 
[2670000], rate=40130.26/min 
[2680000], rate=40129.77/min 
[2690000], rate=40129.29/min 
[2700000], rate=40128.81/min 
[2710000], rate=40138.24/min 
[2720000], rate=40147.60/min 
[2730000], rate=40147.06/min 
[2740000], rate=40156.33/min 
[2750000], rate=40155.76/min 
[2760000], rate=40184.42/min 
[2770000], rate=40212.92/min 
[2780000], rate=40231.55/min 
[2790000], rate=40269.43/min 
[2800000], rate=40297.43/min 
[2810000], rate=40325.28/min 
[2820000], rate=40352.97/min 
[2830000], rate=40380.50/min 
[2840000], rate=40417.46/min 
[2850000], rate=40454.22/min 
[2860000], rate=40500.35/min 
[2870000], rate=40546.27/min 
[2880000], rate=40601.50/min -building interval tree based on /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=75000.00/min 
[20000], rate=80000.00/min 
[30000], rate=81818.18/min 
[40000], rate=85714.29/min 
[50000], rate=93750.00/min 
[60000], rate=94736.84/min 
[70000], rate=95454.55/min 
[80000], rate=97959.18/min 
[90000], rate=98181.82/min 
[100000], rate=98360.66/min 
[110000], rate=101538.46/min 
[120000], rate=102857.14/min 
[130000], rate=104000.00/min 
[140000], rate=102439.02/min 
[150000], rate=103448.28/min 
[160000], rate=105494.51/min 
[170000], rate=103030.30/min 
[180000], rate=101886.79/min 
[190000], rate=100000.00/min 
[200000], rate=99173.55/min 
[210000], rate=99212.60/min 
[220000], rate=100763.36/min 
[230000], rate=100729.93/min 
[240000], rate=100699.30/min 
[250000], rate=101351.35/min 
[260000], rate=100645.16/min 
[270000], rate=101250.00/min 
[280000], rate=102439.02/min 
[290000], rate=103571.43/min 
[300000], rate=104046.24/min 
[310000], rate=103333.33/min 
[320000], rate=104347.83/min 
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[340000], rate=101492.54/min 
[350000], rate=100000.00/min 
[360000], rate=98630.14/min 
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[400000], rate=97165.99/min 
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[480000], rate=98630.14/min 
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[500000], rate=99667.77/min 
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[540000], rate=97590.36/min 
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[600000], rate=97826.09/min 
[610000], rate=97082.23/min 
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[660000], rate=96350.36/min 
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[680000], rate=92727.27/min 
[690000], rate=84489.80/min 
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[790000], rate=53863.64/min 
[800000], rate=53156.15/min 
[810000], rate=51702.13/min 
[820000], rate=50152.91/min 
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[840000], rate=47727.27/min 
[850000], rate=46788.99/min 
[860000], rate=45704.16/min 
[870000], rate=44577.28/min 
[880000], rate=43349.75/min 
[890000], rate=42246.84/min 
[900000], rate=41411.04/min 
[910000], rate=40444.44/min 
[920000], rate=39655.17/min 
[930000], rate=39048.29/min 
[940000], rate=38367.35/min 
[950000], rate=37773.36/min 
[960000], rate=37137.33/min 
[970000], rate=36239.10/min 
[980000], rate=35679.61/min 
[990000], rate=35273.16/min 
[1000000], rate=34822.98/min 
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[1020000], rate=34018.90/min 
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[1060000], rate=33125.00/min 
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[1100000], rate=32576.51/min 
[1110000], rate=32456.14/min 
[1120000], rate=32323.23/min 
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[1140000], rate=32052.48/min 
[1150000], rate=31929.66/min 
[1160000], rate=31853.55/min 
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[1180000], rate=31677.85/min 
[1190000], rate=31677.02/min 
[1200000], rate=31606.67/min 
[1210000], rate=31592.69/min 
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[1230000], rate=31538.46/min 
[1240000], rate=31498.73/min 
[1250000], rate=31472.93/min 
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[1270000], rate=31370.93/min 
[1280000], rate=31398.20/min 
[1290000], rate=31437.86/min 
[1300000], rate=31464.30/min 
[1310000], rate=31477.77/min 
[1320000], rate=31491.05/min 
[1330000], rate=31529.04/min 
[1340000], rate=31566.55/min 
[1350000], rate=31578.95/min 
[1360000], rate=31615.65/min 
[1370000], rate=31639.72/min 
[1380000], rate=31663.48/min 
[1390000], rate=31698.97/min 
[1400000], rate=31734.04/min 
[1410000], rate=31780.62/min 
[1420000], rate=31862.38/min 
[1430000], rate=31931.52/min 
[1440000], rate=31988.15/min 
[1450000], rate=32044.20/min 
[1460000], rate=32123.21/min 
[1470000], rate=32189.78/min 
[1480000], rate=32267.44/min 
[1490000], rate=32356.13/min 
[1500000], rate=32432.43/min 
[1510000], rate=32508.07/min 
[1520000], rate=32583.07/min 
[1530000], rate=32669.04/min 
[1540000], rate=32777.58/min 
[1550000], rate=32862.19/min 
[1560000], rate=32957.75/min 
[1570000], rate=33041.04/min 
[1580000], rate=33135.27/min 
[1590000], rate=33252.00/min 
[1600000], rate=33356.50/min 
[1610000], rate=33460.34/min 
[1620000], rate=33551.95/min 
[1630000], rate=33654.51/min 
[1640000], rate=33756.43/min 
[1650000], rate=33857.73/min 
[1660000], rate=33969.99/min 
[1670000], rate=33954.59/min 
[1680000], rate=33916.55/min 
[1690000], rate=33924.39/min 
[1700000], rate=33932.14/min 
[1710000], rate=33951.03/min 
[1720000], rate=33969.72/min 
[1730000], rate=33999.34/min 
[1740000], rate=34028.68/min 
[1750000], rate=34068.79/min 
[1760000], rate=34108.53/min 
[1770000], rate=34158.89/min 
[1780000], rate=34230.77/min 
[1790000], rate=34280.24/min 
[1800000], rate=34340.22/min 
[1810000], rate=34399.75/min 
[1820000], rate=34458.82/min 
[1830000], rate=34506.60/min 
[1840000], rate=34564.81/min 
[1850000], rate=34622.58/min 
[1860000], rate=34690.71/min 
[1870000], rate=34769.14/min 
[1880000], rate=34836.32/min 
[1890000], rate=34913.79/min 
[1900000], rate=34990.79/min 
[1910000], rate=35067.32/min 
[1920000], rate=35154.10/min 
[1930000], rate=35229.69/min 
[1940000], rate=35326.25/min 
[1950000], rate=35411.62/min 
[1960000], rate=35485.82/min 
[1970000], rate=35570.27/min 
[1980000], rate=35675.68/min 
[1990000], rate=35759.21/min 
[2000000], rate=35853.00/min 
[2010000], rate=35957.07/min 
[2020000], rate=35953.72/min 
[2030000], rate=35834.07/min 
[2040000], rate=35705.95/min 
[2050000], rate=35610.89/min 
[2060000], rate=35619.60/min 
[2070000], rate=35536.48/min 
[2080000], rate=35454.55/min 
[2090000], rate=35373.77/min 
[2100000], rate=35284.23/min 
[2110000], rate=35274.45/min 
[2120000], rate=35225.70/min 
[2130000], rate=35187.22/min 
[2140000], rate=35139.57/min 
[2150000], rate=35111.59/min 
[2160000], rate=35121.95/min 
[2170000], rate=35113.27/min 
[2180000], rate=35123.52/min 
[2190000], rate=35114.91/min 
[2200000], rate=35125.07/min 
[2210000], rate=35144.45/min 
[2220000], rate=35182.25/min 
[2230000], rate=35201.26/min 
[2240000], rate=35247.84/min 
[2250000], rate=35294.12/min 
[2260000], rate=35349.32/min 
[2270000], rate=35367.44/min 
[2280000], rate=35403.73/min 
[2290000], rate=35439.77/min 
[2300000], rate=35466.46/min 
[2310000], rate=35502.05/min 
[2320000], rate=35555.56/min 
[2330000], rate=35590.63/min 
[2340000], rate=35634.52/min 
[2350000], rate=35687.17/min 
[2360000], rate=35730.51/min 
[2370000], rate=35782.59/min 
[2380000], rate=35834.38/min 
[2390000], rate=35894.87/min 
[2400000], rate=35955.06/min 
[2410000], rate=36023.92/min 
[2420000], rate=36083.50/min 
[2430000], rate=36160.71/min 
[2440000], rate=36228.66/min 
[2450000], rate=36314.23/min 
[2460000], rate=36381.56/min 
[2470000], rate=36457.56/min 
[2480000], rate=36533.27/min 
[2490000], rate=36617.65/min 
[2500000], rate=36692.76/min 
[2510000], rate=36776.56/min 
[2520000], rate=36860.07/min 
[2530000], rate=36943.30/min 
[2540000], rate=37026.24/min 
[2550000], rate=37090.91/min 
[2560000], rate=37092.49/min 
[2570000], rate=37076.22/min 
[2580000], rate=37042.35/min 
[2590000], rate=37008.81/min 
[2600000], rate=36984.35/min 
[2610000], rate=36960.11/min 
[2620000], rate=36970.84/min 
[2630000], rate=36990.15/min 
[2640000], rate=37000.70/min 
[2650000], rate=37011.17/min 
[2660000], rate=37012.99/min 
[2670000], rate=37031.90/min 
[2680000], rate=37059.23/min 
[2690000], rate=37086.40/min 
[2700000], rate=37104.90/min 
[2710000], rate=37131.77/min 
[2720000], rate=37166.93/min 
[2730000], rate=37193.46/min 
[2740000], rate=37211.41/min 
[2750000], rate=37246.05/min 
[2760000], rate=37280.50/min 
[2770000], rate=37306.40/min 
[2780000], rate=37332.14/min 
[2790000], rate=37366.07/min 
[2800000], rate=37399.82/min 
[2810000], rate=37441.71/min 
[2820000], rate=37483.39/min 
[2830000], rate=37524.86/min 
[2840000], rate=37566.14/min 
[2850000], rate=37648.61/min 
[2860000], rate=37706.00/min 
[2870000], rate=37754.88/min 
[2880000], rate=37811.82/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 0.00 reads per min processed...  
 0.00 reads per min processed...  
 18000000.00 reads per min processed...  
 24000000.00 reads per min processed...  
 15000000.00 reads per min processed...  
 18000000.00 reads per min processed...  
 10500000.00 reads per min processed...  
 6857142.86 reads per min processed...  
 6000000.00 reads per min processed...  
 5454545.45 reads per min processed...  
 5076923.08 reads per min processed...  
 4800000.00 reads per min processed...  
 4588235.29 reads per min processed...  
 4421052.63 reads per min processed...  
 4285714.29 reads per min processed...  
 4173913.04 reads per min processed...  
 4080000.00 reads per min processed...  
 4000000.00 reads per min processed...  
 3931034.48 reads per min processed...  
 3870967.74 reads per min processed...  
 3818181.82 reads per min processed...  
 3882352.94 reads per min processed...  
 3833333.33 reads per min processed...  
 3789473.68 reads per min processed...  
 3750000.00 reads per min processed...  
 3714285.71 reads per min processed...  
 3681818.18 reads per min processed...  
 3652173.91 reads per min processed...  
 3702127.66 reads per min processed...  
 3673469.39 reads per min processed...  
 3647058.82 reads per min processed...  
 3622641.51 reads per min processed...  
 3666666.67 reads per min processed...  
 3642857.14 reads per min processed...  
 3684210.53 reads per min processed...  
 3661016.95 reads per min processed...  
 3639344.26 reads per min processed...  
 3619047.62 reads per min processed...  
 3600000.00 reads per min processed...  
 3636363.64 reads per min processed...  
 3617647.06 reads per min processed...  
 3652173.91 reads per min processed...  
 3633802.82 reads per min processed...  
 3666666.67 reads per min processed...  
 3648648.65 reads per min processed...  
 3631578.95 reads per min processed...  
 3710526.32 reads per min processed...  
 3740259.74 reads per min processed...  
 3769230.77 reads per min processed...  
 3846153.85 reads per min processed...  
 3873417.72 reads per min processed...  
 3949367.09 reads per min processed...  
 3925925.93 reads per min processed...  
 3903614.46 reads per min processed...  
 3928571.43 reads per min processed...  
 3906976.74 reads per min processed...  
 3886363.64 reads per min processed...  
 3910112.36 reads per min processed...  
 3890109.89 reads per min processed...  
 3913043.48 reads per min processed...  
 3935483.87 reads per min processed...  
 3915789.47 reads per min processed...  
 3937500.00 reads per min processed...  
 3918367.35 reads per min processed...  
 3900000.00 reads per min processed...  
 3920792.08 reads per min processed...  
 3902912.62 reads per min processed...  
 3923076.92 reads per min processed...  
 3905660.38 reads per min processed...  
 3925233.64 reads per min processed...  
 3908256.88 reads per min processed...  
 3927272.73 reads per min processed...  
 3910714.29 reads per min processed...  
 3929203.54 reads per min processed...  
 3913043.48 reads per min processed...  
 3897435.90 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.o2jRhoMX9S/1173_NWE_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -4663643.000916
EM: Round [1] log likelihood: -4663028.220740
EM: Round [2] log likelihood: -4662826.901872
EM: Round [3] log likelihood: -4662735.435342
EM: Round [4] log likelihood: -4662686.970877
EM: Round [5] log likelihood: -4662658.698481
EM: Round [6] log likelihood: -4662640.945824
EM: Round [7] log likelihood: -4662629.101759
EM: Round [8] log likelihood: -4662620.790613
EM: Round [9] log likelihood: -4662614.709103
EM: Round [10] log likelihood: -4662610.102183
EM: Round [11] log likelihood: -4662606.511092
EM: Round [12] log likelihood: -4662603.645124
EM: Round [13] log likelihood: -4662601.312960
EM: Round [14] log likelihood: -4662599.384289
EM: Round [15] log likelihood: -4662597.767558
EM: Round [16] log likelihood: -4662596.396654
EM: Round [17] log likelihood: -4662595.222673
EM: Round [18] log likelihood: -4662594.208685
EM: Round [19] log likelihood: -4662593.326290
EM: Round [20] log likelihood: -4662592.553307
EM: Round [21] log likelihood: -4662591.872167
EM: Round [22] log likelihood: -4662591.268789
EM: Round [23] log likelihood: -4662590.731755
EM: Round [24] log likelihood: -4662590.251718
EM: Round [25] log likelihood: -4662589.820957
EM: Round [26] log likelihood: -4662589.433039
EM: Round [27] log likelihood: -4662589.082562
EM: Round [28] log likelihood: -4662588.764962
EM: Round [29] log likelihood: -4662588.476354
EM: Round [30] log likelihood: -4662588.213414
EM: Round [31] log likelihood: -4662587.973280
EM: Round [32] log likelihood: -4662587.753477
EM: Round [33] log likelihood: -4662587.551855
EM: Round [34] log likelihood: -4662587.366535
EM: Round [35] log likelihood: -4662587.195874
EM: Round [36] log likelihood: -4662587.038424
EM: Round [37] log likelihood: -4662586.892909
EM: Round [38] log likelihood: -4662586.758199
EM: Round [39] log likelihood: -4662586.633291
EM: Round [40] log likelihood: -4662586.517291
EM: Round [41] log likelihood: -4662586.409404
EM: Round [42] log likelihood: -4662586.308916
EM: Round [43] log likelihood: -4662586.215189
EM: Round [44] log likelihood: -4662586.127649
EM: Round [45] log likelihood: -4662586.045781
EM: Round [46] log likelihood: -4662585.969119
EM: Round [47] log likelihood: -4662585.897243
EM: Round [48] log likelihood: -4662585.829773
EM: Round [49] log likelihood: -4662585.766366
EM: Round [50] log likelihood: -4662585.706709
EM: Round [51] log likelihood: -4662585.650519
EM: Round [52] log likelihood: -4662585.597539
EM: Round [53] log likelihood: -4662585.547534
EM: Round [54] log likelihood: -4662585.500290
EM: Round [55] log likelihood: -4662585.455612
EM: Round [56] log likelihood: -4662585.413320
EM: Round [57] log likelihood: -4662585.373253
EM: Round [58] log likelihood: -4662585.335260
EM: Round [59] log likelihood: -4662585.299204
EM: Round [60] log likelihood: -4662585.264958
EM: Round [61] log likelihood: -4662585.232407
EM: Round [62] log likelihood: -4662585.201444
EM: Round [63] log likelihood: -4662585.171971
EM: Round [64] log likelihood: -4662585.143896
EM: Round [65] log likelihood: -4662585.117137
EM: Round [66] log likelihood: -4662585.091614
EM: Round [67] log likelihood: -4662585.067257
EM: Round [68] log likelihood: -4662585.043999
EM: Round [69] log likelihood: -4662585.021777
EM: Round [70] log likelihood: -4662585.000535
EM: Round [71] log likelihood: -4662584.980219
EM: Round [72] log likelihood: -4662584.960780
EM: Round [73] log likelihood: -4662584.942170
EM: Round [74] log likelihood: -4662584.924347
EM: Round [75] log likelihood: -4662584.907269
EM: Round [76] log likelihood: -4662584.890900
EM: Round [77] log likelihood: -4662584.875204
EM: Round [78] log likelihood: -4662584.860147
EM: Round [79] log likelihood: -4662584.845698
EM: Round [80] log likelihood: -4662584.831829
EM: Round [81] log likelihood: -4662584.818511
EM: Round [82] log likelihood: -4662584.805718
EM: Round [83] log likelihood: -4662584.793427
EM: Round [84] log likelihood: -4662584.781614
EM: Round [85] log likelihood: -4662584.770257
EM: Round [86] log likelihood: -4662584.759337
EM: Round [87] log likelihood: -4662584.748833
EM: Round [88] log likelihood: -4662584.738727
EM: Round [89] log likelihood: -4662584.729002
EM: Round [90] log likelihood: -4662584.719642
EM: Round [91] log likelihood: -4662584.710631
EM: Round [92] log likelihood: -4662584.701954
EM: Round [93] log likelihood: -4662584.693597
EM: Round [94] log likelihood: -4662584.685547
EM: Round [95] log likelihood: -4662584.677791
EM: Round [96] log likelihood: -4662584.670317
EM: Round [97] log likelihood: -4662584.663113
EM: Round [98] log likelihood: -4662584.656170
EM: Round [99] log likelihood: -4662584.649475
EM: Round [100] log likelihood: -4662584.643020
EM: Round [101] log likelihood: -4662584.636795
EM: Round [102] log likelihood: -4662584.630790
EM: Round [103] log likelihood: -4662584.624998
EM: Round [104] log likelihood: -4662584.619409
EM: Round [105] log likelihood: -4662584.614017
EM: Round [106] log likelihood: -4662584.608813
EM: Round [107] log likelihood: -4662584.603791
EM: Round [108] log likelihood: -4662584.598943
EM: Round [109] log likelihood: -4662584.594262
EM: Round [110] log likelihood: -4662584.589744
EM: Round [111] log likelihood: -4662584.585381
EM: Round [112] log likelihood: -4662584.581167
EM: Round [113] log likelihood: -4662584.577098
EM: Round [114] log likelihood: -4662584.573168
EM: Round [115] log likelihood: -4662584.569371
EM: Round [116] log likelihood: -4662584.565703
EM: Round [117] log likelihood: -4662584.562159
EM: Round [118] log likelihood: -4662584.558735
EM: Round [119] log likelihood: -4662584.555426
EM: Round [120] log likelihood: -4662584.552229
EM: Round [121] log likelihood: -4662584.549138
EM: Round [122] log likelihood: -4662584.546151
EM: Round [123] log likelihood: -4662584.543263
EM: Round [124] log likelihood: -4662584.540471
EM: Round [125] log likelihood: -4662584.537772
EM: Round [126] log likelihood: -4662584.535163
EM: Round [127] log likelihood: -4662584.532639
EM: Round [128] log likelihood: -4662584.530199
EM: Round [129] log likelihood: -4662584.527839
EM: Round [130] log likelihood: -4662584.525557
EM: Round [131] log likelihood: -4662584.523349
EM: Round [132] log likelihood: -4662584.521213
EM: Round [133] log likelihood: -4662584.519147
EM: Round [134] log likelihood: -4662584.517149
EM: Round [135] log likelihood: -4662584.515215
EM: Round [136] log likelihood: -4662584.513344
EM: Round [137] log likelihood: -4662584.511534
EM: Round [138] log likelihood: -4662584.509782
EM: Round [139] log likelihood: -4662584.508086
EM: Round [140] log likelihood: -4662584.506445
EM: Round [141] log likelihood: -4662584.504857
EM: Round [142] log likelihood: -4662584.503319
EM: Round [143] log likelihood: -4662584.501831
EM: Round [144] log likelihood: -4662584.500391
EM: Round [145] log likelihood: -4662584.498996
EM: Round [146] log likelihood: -4662584.497645
EM: Round [147] log likelihood: -4662584.496338
EM: Round [148] log likelihood: -4662584.495072
EM: Round [149] log likelihood: -4662584.493846
EM: Round [150] log likelihood: -4662584.492659
EM: Round [151] log likelihood: -4662584.491509
EM: Round [152] log likelihood: -4662584.490395
EM: Round [153] log likelihood: -4662584.489316
EM: Round [154] log likelihood: -4662584.488271
EM: Round [155] log likelihood: -4662584.487259
EM: Round [156] log likelihood: -4662584.486278
EM: Round [157] log likelihood: -4662584.485328
EM: Round [158] log likelihood: -4662584.484408
EM: Round [159] log likelihood: -4662584.483516
EM: Round [160] log likelihood: -4662584.482652
EM: Round [161] log likelihood: -4662584.481814
EM: Round [162] log likelihood: -4662584.481003
EM: Round [163] log likelihood: -4662584.480216
EM: Round [164] log likelihood: -4662584.479454
EM: Round [165] log likelihood: -4662584.478715
EM: Round [166] log likelihood: -4662584.477998
EM: Round [167] log likelihood: -4662584.477304
EM: Round [168] log likelihood: -4662584.476631
EM: Round [169] log likelihood: -4662584.475978
EM: Round [170] log likelihood: -4662584.475345
EM: Round [171] log likelihood: -4662584.474732
EM: Round [172] log likelihood: -4662584.474137
EM: Round [173] log likelihood: -4662584.473560
EM: Round [174] log likelihood: -4662584.473001
EM: Round [175] log likelihood: -4662584.472458
EM: Round [176] log likelihood: -4662584.471932
EM: Round [177] log likelihood: -4662584.471421
EM: Round [178] log likelihood: -4662584.470926
EM: Round [179] log likelihood: -4662584.470446
EM: Round [180] log likelihood: -4662584.469980
EM: Round [181] log likelihood: -4662584.469528
EM: Round [182] log likelihood: -4662584.469089
EM: Round [183] log likelihood: -4662584.468663
EM: Round [184] log likelihood: -4662584.468250
EM: Round [185] log likelihood: -4662584.467849
EM: Round [186] log likelihood: -4662584.467460
EM: Round [187] log likelihood: -4662584.467083
EM: Round [188] log likelihood: -4662584.466716
EM: Round [189] log likelihood: -4662584.466361
EM: Round [190] log likelihood: -4662584.466015
EM: Round [191] log likelihood: -4662584.465680
EM: Round [192] log likelihood: -4662584.465355
EM: Round [193] log likelihood: -4662584.465039
EM: Round [194] log likelihood: -4662584.464732
EM: Round [195] log likelihood: -4662584.464434
EM: Round [196] log likelihood: -4662584.464145
EM: Round [197] log likelihood: -4662584.463864
EM: Round [198] log likelihood: -4662584.463591
EM: Round [199] log likelihood: -4662584.463325
EM: Round [200] log likelihood: -4662584.463068
EM: Round [201] log likelihood: -4662584.462818
EM: Round [202] log likelihood: -4662584.462575
EM: Round [203] log likelihood: -4662584.462339
EM: Round [204] log likelihood: -4662584.462109
EM: Round [205] log likelihood: -4662584.461886
EM: Round [206] log likelihood: -4662584.461670
EM: Round [207] log likelihood: -4662584.461459
EM: Round [208] log likelihood: -4662584.461254
EM: Round [209] log likelihood: -4662584.461055
EM: Round [210] log likelihood: -4662584.460862
EM: Round [211] log likelihood: -4662584.460674
EM: Round [212] log likelihood: -4662584.460491
EM: Round [213] log likelihood: -4662584.460313
EM: Round [214] log likelihood: -4662584.460141
EM: Round [215] log likelihood: -4662584.459973
EM: Round [216] log likelihood: -4662584.459809
EM: Round [217] log likelihood: -4662584.459650
EM: Round [218] log likelihood: -4662584.459496
EM: Round [219] log likelihood: -4662584.459345
EM: Round [220] log likelihood: -4662584.459199
EM: Round [221] log likelihood: -4662584.459057
EM: Round [222] log likelihood: -4662584.458918
EM: Round [223] log likelihood: -4662584.458783
EM: Round [224] log likelihood: -4662584.458652
EM: Round [225] log likelihood: -4662584.458525
EM: Round [226] log likelihood: -4662584.458400
EM: Round [227] log likelihood: -4662584.458280
EM: Round [228] log likelihood: -4662584.458162
EM: Round [229] log likelihood: -4662584.458047
EM: Round [230] log likelihood: -4662584.457936
EM: Round [231] log likelihood: -4662584.457827
EM: Round [232] log likelihood: -4662584.457721
EM: Round [233] log likelihood: -4662584.457618
EM: Round [234] log likelihood: -4662584.457518
EM: Round [235] log likelihood: -4662584.457420
EM: Stopping iterations at round 235 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -4654396.245022
EM: Round [1] log likelihood: -4653961.004525
EM: Round [2] log likelihood: -4653821.338493
EM: Round [3] log likelihood: -4653759.099400
EM: Round [4] log likelihood: -4653727.102968
EM: Round [5] log likelihood: -4653709.078219
EM: Round [6] log likelihood: -4653698.161125
EM: Round [7] log likelihood: -4653691.131463
EM: Round [8] log likelihood: -4653686.362816
EM: Round [9] log likelihood: -4653682.981097
EM: Round [10] log likelihood: -4653680.490503
EM: Round [11] log likelihood: -4653678.596525
EM: Round [12] log likelihood: -4653677.117048
EM: Round [13] log likelihood: -4653675.935258
EM: Round [14] log likelihood: -4653674.973598
EM: Round [15] log likelihood: -4653674.178891
EM: Round [16] log likelihood: -4653673.513580
EM: Round [17] log likelihood: -4653672.950429
EM: Round [18] log likelihood: -4653672.469224
EM: Round [19] log likelihood: -4653672.054658
EM: Round [20] log likelihood: -4653671.694938
EM: Round [21] log likelihood: -4653671.380833
EM: Round [22] log likelihood: -4653671.105026
EM: Round [23] log likelihood: -4653670.861644
EM: Round [24] log likelihood: -4653670.645920
EM: Round [25] log likelihood: -4653670.453952
EM: Round [26] log likelihood: -4653670.282512
EM: Round [27] log likelihood: -4653670.128910
EM: Round [28] log likelihood: -4653669.990887
EM: Round [29] log likelihood: -4653669.866533
EM: Round [30] log likelihood: -4653669.754221
EM: Round [31] log likelihood: -4653669.652559
EM: Round [32] log likelihood: -4653669.560347
EM: Round [33] log likelihood: -4653669.476549
EM: Round [34] log likelihood: -4653669.400262
EM: Round [35] log likelihood: -4653669.330698
EM: Round [36] log likelihood: -4653669.267165
EM: Round [37] log likelihood: -4653669.209056
EM: Round [38] log likelihood: -4653669.155833
EM: Round [39] log likelihood: -4653669.107022
EM: Round [40] log likelihood: -4653669.062198
EM: Round [41] log likelihood: -4653669.020986
EM: Round [42] log likelihood: -4653668.983050
EM: Round [43] log likelihood: -4653668.948088
EM: Round [44] log likelihood: -4653668.915831
EM: Round [45] log likelihood: -4653668.886036
EM: Round [46] log likelihood: -4653668.858485
EM: Round [47] log likelihood: -4653668.832983
EM: Round [48] log likelihood: -4653668.809351
EM: Round [49] log likelihood: -4653668.787428
EM: Round [50] log likelihood: -4653668.767070
EM: Round [51] log likelihood: -4653668.748146
EM: Round [52] log likelihood: -4653668.730536
EM: Round [53] log likelihood: -4653668.714131
EM: Round [54] log likelihood: -4653668.698834
EM: Round [55] log likelihood: -4653668.684555
EM: Round [56] log likelihood: -4653668.671213
EM: Round [57] log likelihood: -4653668.658733
EM: Round [58] log likelihood: -4653668.647048
EM: Round [59] log likelihood: -4653668.636096
EM: Round [60] log likelihood: -4653668.625821
EM: Round [61] log likelihood: -4653668.616172
EM: Round [62] log likelihood: -4653668.607102
EM: Round [63] log likelihood: -4653668.598567
EM: Round [64] log likelihood: -4653668.590529
EM: Round [65] log likelihood: -4653668.582952
EM: Round [66] log likelihood: -4653668.575802
EM: Round [67] log likelihood: -4653668.569049
EM: Round [68] log likelihood: -4653668.562666
EM: Round [69] log likelihood: -4653668.556626
EM: Round [70] log likelihood: -4653668.550908
EM: Round [71] log likelihood: -4653668.545488
EM: Round [72] log likelihood: -4653668.540348
EM: Round [73] log likelihood: -4653668.535468
EM: Round [74] log likelihood: -4653668.530833
EM: Round [75] log likelihood: -4653668.526427
EM: Round [76] log likelihood: -4653668.522235
EM: Round [77] log likelihood: -4653668.518244
EM: Round [78] log likelihood: -4653668.514442
EM: Round [79] log likelihood: -4653668.510818
EM: Round [80] log likelihood: -4653668.507361
EM: Round [81] log likelihood: -4653668.504061
EM: Round [82] log likelihood: -4653668.500910
EM: Round [83] log likelihood: -4653668.497899
EM: Round [84] log likelihood: -4653668.495021
EM: Round [85] log likelihood: -4653668.492267
EM: Round [86] log likelihood: -4653668.489631
EM: Round [87] log likelihood: -4653668.487108
EM: Round [88] log likelihood: -4653668.484691
EM: Round [89] log likelihood: -4653668.482374
EM: Round [90] log likelihood: -4653668.480153
EM: Round [91] log likelihood: -4653668.478023
EM: Round [92] log likelihood: -4653668.475979
EM: Round [93] log likelihood: -4653668.474017
EM: Round [94] log likelihood: -4653668.472134
EM: Round [95] log likelihood: -4653668.470325
EM: Round [96] log likelihood: -4653668.468586
EM: Round [97] log likelihood: -4653668.466915
EM: Round [98] log likelihood: -4653668.465309
EM: Round [99] log likelihood: -4653668.463765
EM: Round [100] log likelihood: -4653668.462279
EM: Round [101] log likelihood: -4653668.460850
EM: Round [102] log likelihood: -4653668.459474
EM: Round [103] log likelihood: -4653668.458150
EM: Round [104] log likelihood: -4653668.456875
EM: Round [105] log likelihood: -4653668.455647
EM: Round [106] log likelihood: -4653668.454465
EM: Round [107] log likelihood: -4653668.453325
EM: Round [108] log likelihood: -4653668.452228
EM: Round [109] log likelihood: -4653668.451170
EM: Round [110] log likelihood: -4653668.450150
EM: Round [111] log likelihood: -4653668.449167
EM: Round [112] log likelihood: -4653668.448220
EM: Round [113] log likelihood: -4653668.447306
EM: Round [114] log likelihood: -4653668.446424
EM: Round [115] log likelihood: -4653668.445574
EM: Round [116] log likelihood: -4653668.444753
EM: Round [117] log likelihood: -4653668.443962
EM: Round [118] log likelihood: -4653668.443198
EM: Round [119] log likelihood: -4653668.442461
EM: Round [120] log likelihood: -4653668.441750
EM: Round [121] log likelihood: -4653668.441063
EM: Round [122] log likelihood: -4653668.440400
EM: Round [123] log likelihood: -4653668.439760
EM: Round [124] log likelihood: -4653668.439141
EM: Round [125] log likelihood: -4653668.438544
EM: Round [126] log likelihood: -4653668.437968
EM: Round [127] log likelihood: -4653668.437411
EM: Round [128] log likelihood: -4653668.436873
EM: Round [129] log likelihood: -4653668.436353
EM: Round [130] log likelihood: -4653668.435851
EM: Round [131] log likelihood: -4653668.435366
EM: Round [132] log likelihood: -4653668.434897
EM: Round [133] log likelihood: -4653668.434443
EM: Round [134] log likelihood: -4653668.434005
EM: Round [135] log likelihood: -4653668.433582
EM: Round [136] log likelihood: -4653668.433172
EM: Round [137] log likelihood: -4653668.432777
EM: Round [138] log likelihood: -4653668.432394
EM: Round [139] log likelihood: -4653668.432024
EM: Round [140] log likelihood: -4653668.431666
EM: Round [141] log likelihood: -4653668.431320
EM: Round [142] log likelihood: -4653668.430985
EM: Round [143] log likelihood: -4653668.430661
EM: Round [144] log likelihood: -4653668.430348
EM: Round [145] log likelihood: -4653668.430045
EM: Round [146] log likelihood: -4653668.429752
EM: Round [147] log likelihood: -4653668.429468
EM: Round [148] log likelihood: -4653668.429193
EM: Round [149] log likelihood: -4653668.428927
EM: Round [150] log likelihood: -4653668.428670
EM: Round [151] log likelihood: -4653668.428421
EM: Round [152] log likelihood: -4653668.428180
EM: Round [153] log likelihood: -4653668.427947
EM: Round [154] log likelihood: -4653668.427721
EM: Round [155] log likelihood: -4653668.427502
EM: Round [156] log likelihood: -4653668.427290
EM: Round [157] log likelihood: -4653668.427085
EM: Round [158] log likelihood: -4653668.426886
EM: Round [159] log likelihood: -4653668.426693
EM: Round [160] log likelihood: -4653668.426507
EM: Round [161] log likelihood: -4653668.426326
EM: Round [162] log likelihood: -4653668.426151
EM: Round [163] log likelihood: -4653668.425981
EM: Round [164] log likelihood: -4653668.425816
EM: Round [165] log likelihood: -4653668.425657
EM: Round [166] log likelihood: -4653668.425502
EM: Round [167] log likelihood: -4653668.425352
EM: Round [168] log likelihood: -4653668.425207
EM: Round [169] log likelihood: -4653668.425066
EM: Round [170] log likelihood: -4653668.424929
EM: Round [171] log likelihood: -4653668.424797
EM: Round [172] log likelihood: -4653668.424668
EM: Round [173] log likelihood: -4653668.424543
EM: Round [174] log likelihood: -4653668.424422
EM: Round [175] log likelihood: -4653668.424305
EM: Round [176] log likelihood: -4653668.424191
EM: Round [177] log likelihood: -4653668.424080
EM: Round [178] log likelihood: -4653668.423973
EM: Round [179] log likelihood: -4653668.423869
EM: Round [180] log likelihood: -4653668.423767
EM: Round [181] log likelihood: -4653668.423669
EM: Stopping iterations at round 181 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 295992973 > /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir > /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir --annotate /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir
-done, see /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 571, filtered: 2708)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.o2jRhoMX9S/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.o2jRhoMX9S/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [ENSG00000287388.1]
WARNING, no entry stored in dbm for [ENSG00000205534.6]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
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WARNING, no entry stored in dbm for [ENSG00000258098.2]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000249923.1]
WARNING, no entry stored in dbm for [ENSG00000258098.2]
WARNING, no entry stored in dbm for [ENSG00000274615.1]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000260126.2]
WARNING, no entry stored in dbm for [ENSG00000254681.6]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000245958.6]
WARNING, no entry stored in dbm for [ENSG00000181984.11]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000225422.4]
WARNING, no entry stored in dbm for [ENSG00000267053.8]
WARNING, no entry stored in dbm for [ENSG00000236866.5]
WARNING, no entry stored in dbm for [ENSG00000172965.17]
WARNING, no entry stored in dbm for [ENSG00000204745.4]
WARNING, no entry stored in dbm for [ENSG00000215483.11]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000232063.2]
WARNING, no entry stored in dbm for [ENSG00000255411.3]
WARNING, no entry stored in dbm for [ENSG00000286546.1]
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WARNING, no entry stored in dbm for [ENSG00000272140.2]
WARNING, no entry stored in dbm for [ENSG00000248515.2]
WARNING, no entry stored in dbm for [ENSG00000262898.3]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000259755.1]
WARNING, no entry stored in dbm for [ENSG00000277125.1]
WARNING, no entry stored in dbm for [ENSG00000249675.1]
WARNING, no entry stored in dbm for [ENSG00000255282.6]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000225594.1]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000260727.2]
WARNING, no entry stored in dbm for [ENSG00000261722.1]
WARNING, no entry stored in dbm for [ENSG00000283698.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000203288.4]
WARNING, no entry stored in dbm for [ENSG00000230116.1]
WARNING, no entry stored in dbm for [ENSG00000248927.1]
WARNING, no entry stored in dbm for [ENSG00000249752.1]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000271699.5]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000232228.1]
WARNING, no entry stored in dbm for [ENSG00000253945.1]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000286546.1]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000184319.16]
WARNING, no entry stored in dbm for [ENSG00000274712.2]
WARNING, no entry stored in dbm for [ENSG00000223949.8]
WARNING, no entry stored in dbm for [ENSG00000253559.1]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000277041.1]
WARNING, no entry stored in dbm for [ENSG00000247950.7]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000243980.3]
WARNING, no entry stored in dbm for [ENSG00000263740.2]
WARNING, no entry stored in dbm for [ENSG00000214955.5]
WARNING, no entry stored in dbm for [ENSG00000259240.1]
WARNING, no entry stored in dbm for [ENSG00000257139.1]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000267259.1]
WARNING, no entry stored in dbm for [ENSG00000238152.2]
WARNING, no entry stored in dbm for [ENSG00000226450.2]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [IGL.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000255411.3]
WARNING, no entry stored in dbm for [ENSG00000260902.1]
WARNING, no entry stored in dbm for [ENSG00000245573.9]
WARNING, no entry stored in dbm for [ENSG00000259404.5]
WARNING, no entry stored in dbm for [ENSG00000227619.3]
WARNING, no entry stored in dbm for [ENSG00000261011.1]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000255910.2]
WARNING, no entry stored in dbm for [ENSG00000258730.1]
WARNING, no entry stored in dbm for [ENSG00000286912.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000251378.1]
WARNING, no entry stored in dbm for [ENSG00000267198.1]
WARNING, no entry stored in dbm for [ENSG00000131484.4]
WARNING, no entry stored in dbm for [ENSG00000265936.1]
WARNING, no entry stored in dbm for [ENSG00000214259.3]
WARNING, no entry stored in dbm for [ENSG00000271018.1]
WARNING, no entry stored in dbm for [ENSG00000224237.1]
WARNING, no entry stored in dbm for [ENSG00000257403.2]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000278416.1]
WARNING, no entry stored in dbm for [ENSG00000288187.1]
WARNING, no entry stored in dbm for [ENSG00000267606.1]
WARNING, no entry stored in dbm for [ENSG00000269235.2]
WARNING, no entry stored in dbm for [ENSG00000249601.2]
WARNING, no entry stored in dbm for [ENSG00000239883.8]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000285877.1]
WARNING, no entry stored in dbm for [ENSG00000255949.1]
WARNING, no entry stored in dbm for [ENSG00000239516.1]
WARNING, no entry stored in dbm for [ENSG00000214192.3]
WARNING, no entry stored in dbm for [ENSG00000258557.1]
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000241621.1]
WARNING, no entry stored in dbm for [ENSG00000232823.2]
WARNING, no entry stored in dbm for [ENSG00000228236.2]
WARNING, no entry stored in dbm for [ENSG00000235954.7]
WARNING, no entry stored in dbm for [ENSG00000250431.1]
WARNING, no entry stored in dbm for [ENSG00000217026.3]
WARNING, no entry stored in dbm for [ENSG00000244627.5]
WARNING, no entry stored in dbm for [ENSG00000285958.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000248019.3]
WARNING, no entry stored in dbm for [ENSG00000228549.4]
WARNING, no entry stored in dbm for [ENSG00000254057.1]
WARNING, no entry stored in dbm for [ENSG00000240668.1]
WARNING, no entry stored in dbm for [ENSG00000226674.11]
WARNING, no entry stored in dbm for [ENSG00000230092.7]
WARNING, no entry stored in dbm for [ENSG00000256849.1]
WARNING, no entry stored in dbm for [ENSG00000272556.2]
WARNING, no entry stored in dbm for [ENSG00000228274.4]
WARNING, no entry stored in dbm for [ENSG00000285871.1]
WARNING, no entry stored in dbm for [ENSG00000213234.4]
WARNING, no entry stored in dbm for [ENSG00000258230.2]
WARNING, no entry stored in dbm for [ENSG00000263821.1]
WARNING, no entry stored in dbm for [ENSG00000257511.1]
WARNING, no entry stored in dbm for [ENSG00000224682.1]
WARNING, no entry stored in dbm for [ENSG00000279980.1]
WARNING, no entry stored in dbm for [ENSG00000267322.2]
WARNING, no entry stored in dbm for [ENSG00000287920.1]
WARNING, no entry stored in dbm for [ENSG00000241162.3]
WARNING, no entry stored in dbm for [ENSG00000240490.3]
WARNING, no entry stored in dbm for [ENSG00000262801.6]
WARNING, no entry stored in dbm for [ENSG00000237910.1]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
WARNING, no entry stored in dbm for [ENSG00000235016.1]
WARNING, no entry stored in dbm for [ENSG00000215837.7]
WARNING, no entry stored in dbm for [ENSG00000283426.1]
WARNING, no entry stored in dbm for [ENSG00000245275.8]
WARNING, no entry stored in dbm for [ENSG00000225868.7]
WARNING, no entry stored in dbm for [ENSG00000226318.1]
WARNING, no entry stored in dbm for [ENSG00000060303.5]
WARNING, no entry stored in dbm for [ENSG00000241582.1]
WARNING, no entry stored in dbm for [ENSG00000234851.4]
WARNING, no entry stored in dbm for [ENSG00000223508.5]
WARNING, no entry stored in dbm for [ENSG00000262898.3]
WARNING, no entry stored in dbm for [ENSG00000226217.1]
WARNING, no entry stored in dbm for [ENSG00000258245.1]
WARNING, no entry stored in dbm for [ENSG00000273876.1]
WARNING, no entry stored in dbm for [ENSG00000245534.7]
WARNING, no entry stored in dbm for [ENSG00000201758.1]
WARNING, no entry stored in dbm for [ENSG00000229391.7]
WARNING, no entry stored in dbm for [ENSG00000181984.11]
WARNING, no entry stored in dbm for [ENSG00000286694.1]
WARNING, no entry stored in dbm for [ENSG00000254454.2]
WARNING, no entry stored in dbm for [ENSG00000280303.2]
WARNING, no entry stored in dbm for [ENSG00000249846.7]
WARNING, no entry stored in dbm for [ENSG00000203739.4]
WARNING, no entry stored in dbm for [ENSG00000213730.3]
WARNING, no entry stored in dbm for [ENSG00000214439.4]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
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WARNING, no entry stored in dbm for [ENSG00000286186.1]
WARNING, no entry stored in dbm for [ENSG00000235698.1]
WARNING, no entry stored in dbm for [ENSG00000223509.8]
WARNING, no entry stored in dbm for [ENSG00000223566.1]
WARNING, no entry stored in dbm for [ENSG00000248515.2]
WARNING, no entry stored in dbm for [ENSG00000183444.10]
WARNING, no entry stored in dbm for [ENSG00000205847.6]
WARNING, no entry stored in dbm for [ENSG00000236120.7]
WARNING, no entry stored in dbm for [ENSG00000214807.2]
WARNING, no entry stored in dbm for [ENSG00000226703.1]
WARNING, no entry stored in dbm for [ENSG00000228889.7]
WARNING, no entry stored in dbm for [ENSG00000228393.4]
WARNING, no entry stored in dbm for [ENSG00000239767.2]
WARNING, no entry stored in dbm for [ENSG00000200463.1]
WARNING, no entry stored in dbm for [ENSG00000254635.6]
WARNING, no entry stored in dbm for [ENSG00000269929.3]
WARNING, no entry stored in dbm for [ENSG00000255248.9]
WARNING, no entry stored in dbm for [ENSG00000233325.3]
WARNING, no entry stored in dbm for [ENSG00000231427.6]
WARNING, no entry stored in dbm for [ENSG00000233325.3]
WARNING, no entry stored in dbm for [ENSG00000250012.2]
WARNING, no entry stored in dbm for [ENSG00000249898.8]
WARNING, no entry stored in dbm for [ENSG00000249184.2]
WARNING, no entry stored in dbm for [ENSG00000282785.1]
WARNING, no entry stored in dbm for [ENSG00000248323.7]
WARNING, no entry stored in dbm for [ENSG00000284427.1]
WARNING, no entry stored in dbm for [ENSG00000255532.1]
WARNING, no entry stored in dbm for [ENSG00000226453.2]
WARNING, no entry stored in dbm for [ENSG00000253394.6]
WARNING, no entry stored in dbm for [ENSG00000287126.1]
WARNING, no entry stored in dbm for [ENSG00000286042.1]
WARNING, no entry stored in dbm for [ENSG00000271228.1]
WARNING, no entry stored in dbm for [ENSG00000260807.7]
WARNING, no entry stored in dbm for [ENSG00000206149.10]
WARNING, no entry stored in dbm for [ENSG00000274093.1]
WARNING, no entry stored in dbm for [ENSG00000285668.1]
WARNING, no entry stored in dbm for [ENSG00000245482.2]
WARNING, no entry stored in dbm for [ENSG00000241549.8]
WARNING, no entry stored in dbm for [ENSG00000261584.1]
WARNING, no entry stored in dbm for [ENSG00000272645.3]
WARNING, no entry stored in dbm for [ENSG00000277053.4]
WARNING, no entry stored in dbm for [ENSG00000242808.10]
WARNING, no entry stored in dbm for [ENSG00000260062.3]
WARNING, no entry stored in dbm for [ENSG00000254349.6]
WARNING, no entry stored in dbm for [ENSG00000255949.1]
WARNING, no entry stored in dbm for [ENSG00000248626.1]
WARNING, no entry stored in dbm for [ENSG00000234975.6]
WARNING, no entry stored in dbm for [ENSG00000218213.1]
WARNING, no entry stored in dbm for [ENSG00000229848.1]
WARNING, no entry stored in dbm for [ENSG00000282826.2]
WARNING, no entry stored in dbm for [ENSG00000283541.1]
WARNING, no entry stored in dbm for [ENSG00000286572.1]
WARNING, no entry stored in dbm for [ENSG00000285257.1]
WARNING, no entry stored in dbm for [ENSG00000227304.3]
WARNING, no entry stored in dbm for [ENSG00000258792.4]
WARNING, no entry stored in dbm for [ENSG00000236459.1]
WARNING, no entry stored in dbm for [ENSG00000268222.1]
WARNING, no entry stored in dbm for [ENSG00000236671.9]
WARNING, no entry stored in dbm for [ENSG00000243531.1]
WARNING, no entry stored in dbm for [ENSG00000245293.3]
WARNING, no entry stored in dbm for [ENSG00000186743.2]
WARNING, no entry stored in dbm for [ENSG00000232973.13]
WARNING, no entry stored in dbm for [ENSG00000251259.1]
WARNING, no entry stored in dbm for [ENSG00000249049.1]
WARNING, no entry stored in dbm for [ENSG00000181524.6]
WARNING, no entry stored in dbm for [ENSG00000260896.6]
WARNING, no entry stored in dbm for [ENSG00000262248.1]
WARNING, no entry stored in dbm for [ENSG00000288694.1]
WARNING, no entry stored in dbm for [ENSG00000204397.9]
WARNING, no entry stored in dbm for [ENSG00000259577.2]
WARNING, no entry stored in dbm for [ENSG00000188828.13]
WARNING, no entry stored in dbm for [ENSG00000227742.2]
WARNING, no entry stored in dbm for [ENSG00000275088.1]
WARNING, no entry stored in dbm for [ENSG00000287929.1]
WARNING, no entry stored in dbm for [ENSG00000231140.3]
WARNING, no entry stored in dbm for [ENSG00000242159.1]
WARNING, no entry stored in dbm for [ENSG00000270025.2]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000245261.1]
WARNING, no entry stored in dbm for [ENSG00000279022.1]
WARNING, no entry stored in dbm for [ENSG00000233967.7]
WARNING, no entry stored in dbm for [ENSG00000226548.1]
WARNING, no entry stored in dbm for [ENSG00000241291.3]
WARNING, no entry stored in dbm for [ENSG00000228995.1]
WARNING, no entry stored in dbm for [ENSG00000254422.1]
WARNING, no entry stored in dbm for [ENSG00000229700.1]
WARNING, no entry stored in dbm for [ENSG00000236111.5]
WARNING, no entry stored in dbm for [ENSG00000226197.3]
WARNING, no entry stored in dbm for [ENSG00000286544.1]
WARNING, no entry stored in dbm for [ENSG00000271901.2]
WARNING, no entry stored in dbm for [ENSG00000227803.2]
WARNING, no entry stored in dbm for [ENSG00000258504.2]
WARNING, no entry stored in dbm for [ENSG00000283773.1]
WARNING, no entry stored in dbm for [ENSG00000259562.2]
WARNING, no entry stored in dbm for [ENSG00000261505.1]
WARNING, no entry stored in dbm for [ENSG00000249019.2]
WARNING, no entry stored in dbm for [ENSG00000213972.3]
WARNING, no entry stored in dbm for [ENSG00000219102.3]
WARNING, no entry stored in dbm for [ENSG00000232599.1]
WARNING, no entry stored in dbm for [ENSG00000287853.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000276850.5]
WARNING, no entry stored in dbm for [ENSG00000227180.1]
WARNING, no entry stored in dbm for [ENSG00000223804.5]
WARNING, no entry stored in dbm for [ENSG00000223779.6]
WARNING, no entry stored in dbm for [ENSG00000223804.5]
WARNING, no entry stored in dbm for [ENSG00000286542.1]
WARNING, no entry stored in dbm for [ENSG00000256081.2]
WARNING, no entry stored in dbm for [ENSG00000212789.4]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000275557.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000242073.2]
WARNING, no entry stored in dbm for [ENSG00000230305.2]
WARNING, no entry stored in dbm for [ENSG00000246596.7]
WARNING, no entry stored in dbm for [ENSG00000286045.1]
WARNING, no entry stored in dbm for [ENSG00000260466.1]
WARNING, no entry stored in dbm for [ENSG00000166104.15]
WARNING, no entry stored in dbm for [ENSG00000259697.2]
WARNING, no entry stored in dbm for [ENSG00000280211.1]
WARNING, no entry stored in dbm for [ENSG00000261444.1]
WARNING, no entry stored in dbm for [ENSG00000277003.1]
WARNING, no entry stored in dbm for [ENSG00000253697.1]
WARNING, no entry stored in dbm for [ENSG00000236209.1]
WARNING, no entry stored in dbm for [ENSG00000277007.1]
WARNING, no entry stored in dbm for [ENSG00000286133.2]
WARNING, no entry stored in dbm for [ENSG00000276538.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000236299.8]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000187953.10]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000239344.1]
WARNING, no entry stored in dbm for [ENSG00000255091.1]
WARNING, no entry stored in dbm for [ENSG00000287733.1]
WARNING, no entry stored in dbm for [ENSG00000255790.6]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000239985.2]
WARNING, no entry stored in dbm for [ENSG00000275833.1]
WARNING, no entry stored in dbm for [ENSG00000226278.1]
WARNING, no entry stored in dbm for [ENSG00000231359.3]
WARNING, no entry stored in dbm for [ENSG00000213942.3]
WARNING, no entry stored in dbm for [ENSG00000286471.1]
WARNING, no entry stored in dbm for [ENSG00000255621.1]
WARNING, no entry stored in dbm for [ENSG00000261303.6]
WARNING, no entry stored in dbm for [ENSG00000267275.1]
WARNING, no entry stored in dbm for [ENSG00000174171.6]
WARNING, no entry stored in dbm for [ENSG00000224376.1]
WARNING, no entry stored in dbm for [ENSG00000249035.7]
WARNING, no entry stored in dbm for [ENSG00000267312.1]
WARNING, no entry stored in dbm for [ENSG00000264456.1]
WARNING, no entry stored in dbm for [ENSG00000259349.2]
WARNING, no entry stored in dbm for [ENSG00000283541.1]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000260413.1]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000284671.1]
WARNING, no entry stored in dbm for [ENSG00000260447.1]
WARNING, no entry stored in dbm for [ENSG00000252139.1]
WARNING, no entry stored in dbm for [ENSG00000268112.1]
WARNING, no entry stored in dbm for [ENSG00000238086.5]
WARNING, no entry stored in dbm for [ENSG00000279249.3]
WARNING, no entry stored in dbm for [ENSG00000236432.8]
WARNING, no entry stored in dbm for [ENSG00000235725.1]
WARNING, no entry stored in dbm for [ENSG00000277458.1]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000286912.1]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000266869.2]
WARNING, no entry stored in dbm for [ENSG00000213942.3]
WARNING, no entry stored in dbm for [ENSG00000274712.2]
WARNING, no entry stored in dbm for [ENSG00000274712.2]
WARNING, no entry stored in dbm for [ENSG00000274712.2]
WARNING, no entry stored in dbm for [ENSG00000226744.1]
WARNING, no entry stored in dbm for [ENSG00000225108.1]
WARNING, no entry stored in dbm for [ENSG00000272568.6]
WARNING, no entry stored in dbm for [ENSG00000228421.2]
WARNING, no entry stored in dbm for [ENSG00000228421.2]
WARNING, no entry stored in dbm for [ENSG00000241057.2]
WARNING, no entry stored in dbm for [ENSG00000272655.2]
WARNING, no entry stored in dbm for [ENSG00000272240.1]
WARNING, no entry stored in dbm for [ENSG00000276965.1]
WARNING, no entry stored in dbm for [ENSG00000269987.1]
WARNING, no entry stored in dbm for [ENSG00000273763.2]
WARNING, no entry stored in dbm for [ENSG00000280054.1]
WARNING, no entry stored in dbm for [ENSG00000268163.1]
WARNING, no entry stored in dbm for [ENSG00000259838.1]
WARNING, no entry stored in dbm for [ENSG00000251595.7]
WARNING, no entry stored in dbm for [ENSG00000278831.1]
WARNING, no entry stored in dbm for [ENSG00000278416.1]
WARNING, no entry stored in dbm for [ENSG00000248515.2]
WARNING, no entry stored in dbm for [ENSG00000248515.2]
WARNING, no entry stored in dbm for [ENSG00000248515.2]


	* STAR-Fusion complete.  See output: /tmp/nxf.o2jRhoMX9S/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)