File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e5/162f5fc7cfe90104f73e543b4c293e/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:49:52
                             Started mapping on |	Jun 08 09:56:27
                                    Finished on |	Jun 08 10:32:00
       Mapping speed, Million of reads per hour |	363.08

                          Number of input reads |	215125293
                      Average input read length |	208
                                    UNIQUE READS:
                   Uniquely mapped reads number |	203594907
                        Uniquely mapped reads % |	94.64%
                          Average mapped length |	207.69
                       Number of splices: Total |	156157802
            Number of splices: Annotated (sjdb) |	153865830
                       Number of splices: GT/AG |	154099058
                       Number of splices: GC/AG |	1062846
                       Number of splices: AT/AC |	136712
               Number of splices: Non-canonical |	859186
                      Mismatch rate per base, % |	0.39%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.11
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.68
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8354145
             % of reads mapped to multiple loci |	3.88%
        Number of reads mapped to too many loci |	343990
             % of reads mapped to too many loci |	0.16%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2534315
                 % of reads unmapped: too short |	1.18%
                Number of reads unmapped: other |	297936
                     % of reads unmapped: other |	0.14%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%