File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/dc709a1a91082ad01eac3f8bb037f7/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/06f06e14e6f07a5702d2491b0407e6/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.sample_qc.tsv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/21ea054bd63458456caf9e97e81028/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/dc709a1a91082ad01eac3f8bb037f7/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/21/dc709a1a91082ad01eac3f8bb037f7/.command.run
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5
Successfully converted 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2/abundance.h5 to 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2_kallisto_mqc.tsv
  Sample: 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2
  Mean Fragment Length: 119.0 bp
  Median Fragment Length: 113.0 bp
  pct_mito_est_counts: 0.011%
  pct_ribo_est_counts: 1.406%
  pct_hk_est_counts: 0.564%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.023%
  pct_ribo_tpm: 4.319%
  pct_hk_tpm: 0.91%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.187%