File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/98/8889052486e3553eac57b28f32c760/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:37:19
                             Started mapping on |	Jun 08 10:44:32
                                    Finished on |	Jun 08 11:40:35
       Mapping speed, Million of reads per hour |	314.87

                          Number of input reads |	294139793
                      Average input read length |	237
                                    UNIQUE READS:
                   Uniquely mapped reads number |	276976707
                        Uniquely mapped reads % |	94.16%
                          Average mapped length |	236.63
                       Number of splices: Total |	269213417
            Number of splices: Annotated (sjdb) |	265248321
                       Number of splices: GT/AG |	266030704
                       Number of splices: GC/AG |	1862824
                       Number of splices: AT/AC |	214812
               Number of splices: Non-canonical |	1105077
                      Mismatch rate per base, % |	0.36%
                         Deletion rate per base |	0.03%
                        Deletion average length |	1.77
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.66
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	12073061
             % of reads mapped to multiple loci |	4.10%
        Number of reads mapped to too many loci |	871648
             % of reads mapped to too many loci |	0.30%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3612054
                 % of reads unmapped: too short |	1.23%
                Number of reads unmapped: other |	606323
                     % of reads unmapped: other |	0.21%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%