File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/0d4dbaf511b80cb63f840851cd7e8d/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:34:26
                             Started mapping on |	Jun 08 10:41:08
                                    Finished on |	Jun 08 11:42:36
       Mapping speed, Million of reads per hour |	279.40

                          Number of input reads |	286230301
                      Average input read length |	223
                                    UNIQUE READS:
                   Uniquely mapped reads number |	263410178
                        Uniquely mapped reads % |	92.03%
                          Average mapped length |	223.08
                       Number of splices: Total |	244372402
            Number of splices: Annotated (sjdb) |	240597133
                       Number of splices: GT/AG |	241387403
                       Number of splices: GC/AG |	1621073
                       Number of splices: AT/AC |	182456
               Number of splices: Non-canonical |	1181470
                      Mismatch rate per base, % |	0.24%
                         Deletion rate per base |	0.03%
                        Deletion average length |	2.02
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.53
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	17616634
             % of reads mapped to multiple loci |	6.15%
        Number of reads mapped to too many loci |	1195881
             % of reads mapped to too many loci |	0.42%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3566108
                 % of reads unmapped: too short |	1.25%
                Number of reads unmapped: other |	441500
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%