Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/33b20a97159d25e33e24b50664392c/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/37c01c50d65cdfe1626a41b7011ac3/1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_1.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/73/33b20a97159d25e33e24b50664392c/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/37c01c50d65cdfe1626a41b7011ac3/1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2_2.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/2a74edb1bca690b7fab5d343feb21d/1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.RSQuzwCoEQ/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary -sample contains 294921407 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir -J /tmp/nxf.RSQuzwCoEQ/1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction -O /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.RSQuzwCoEQ/1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction -building interval tree based on /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=33333.33/min [20000], rate=32432.43/min [30000], rate=33333.33/min [40000], rate=31578.95/min [50000], rate=32967.03/min [60000], rate=33962.26/min [70000], rate=34710.74/min [80000], rate=35294.12/min [90000], rate=36000.00/min [100000], rate=37037.04/min [110000], rate=37931.03/min [120000], rate=38709.68/min [130000], rate=39393.94/min [140000], rate=39622.64/min [150000], rate=39823.01/min [160000], rate=40167.36/min [170000], rate=40637.45/min [180000], rate=41221.37/min [190000], rate=41605.84/min [200000], rate=41666.67/min [210000], rate=41584.16/min [220000], rate=41904.76/min [230000], rate=42331.29/min [240000], rate=42603.55/min [250000], rate=42979.94/min [260000], rate=43575.42/min [270000], rate=44021.74/min [280000], rate=44562.33/min [290000], rate=45077.72/min [300000], rate=45801.53/min [310000], rate=46384.04/min [320000], rate=46943.77/min [330000], rate=47368.42/min [340000], rate=47775.18/min [350000], rate=48387.10/min [360000], rate=49090.91/min [370000], rate=49553.57/min [380000], rate=47302.90/min [390000], rate=45703.12/min [400000], rate=44362.29/min [410000], rate=43694.49/min [420000], rate=43150.68/min [430000], rate=42715.23/min [440000], rate=42240.00/min [450000], rate=39823.01/min [460000], rate=38709.68/min [470000], rate=38367.35/min [480000], rate=38196.29/min [490000], rate=37984.50/min [500000], rate=37831.02/min [510000], rate=37454.10/min [520000], rate=37320.57/min [530000], rate=37192.98/min [540000], rate=36986.30/min [550000], rate=36504.42/min [560000], rate=36285.10/min [570000], rate=36228.81/min [580000], rate=35546.48/min [590000], rate=34637.96/min [600000], rate=34416.83/min [610000], rate=34430.86/min [620000], rate=34444.44/min [630000], rate=34332.43/min [640000], rate=33982.30/min [650000], rate=33678.76/min [660000], rate=33702.13/min [670000], rate=33640.17/min [680000], rate=33224.76/min [690000], rate=32935.56/min [700000], rate=32634.03/min [710000], rate=32395.44/min [720000], rate=32335.33/min [730000], rate=32420.43/min [740000], rate=32503.66/min [750000], rate=32608.70/min [760000], rate=32641.37/min [770000], rate=32673.27/min [780000], rate=32365.15/min [790000], rate=32157.39/min [800000], rate=32258.06/min [810000], rate=32206.76/min [820000], rate=31989.60/min [830000], rate=31619.05/min [840000], rate=31226.77/min [850000], rate=31230.86/min [860000], rate=31065.62/min [870000], rate=30924.17/min [880000], rate=30805.13/min [890000], rate=30654.42/min [900000], rate=30542.99/min [910000], rate=30400.89/min [920000], rate=30564.78/min [930000], rate=30743.80/min [940000], rate=30887.19/min [950000], rate=31045.75/min [960000], rate=31202.60/min [970000], rate=31374.66/min [980000], rate=31545.06/min [990000], rate=31713.83/min [1000000], rate=31897.93/min [1010000], rate=32029.60/min [1020000], rate=32058.67/min [1030000], rate=32221.06/min [1040000], rate=32348.37/min [1050000], rate=32608.70/min [1060000], rate=32766.62/min [1070000], rate=32855.68/min [1080000], rate=32993.89/min [1090000], rate=33013.63/min [1100000], rate=33099.30/min [1110000], rate=33035.71/min [1120000], rate=33201.58/min [1130000], rate=33366.14/min [1140000], rate=33545.86/min [1150000], rate=33658.54/min [1160000], rate=33737.28/min [1170000], rate=33652.92/min [1180000], rate=33380.48/min [1190000], rate=33163.03/min [1200000], rate=32936.87/min [1210000], rate=32687.98/min [1220000], rate=32547.80/min [1230000], rate=32382.62/min [1240000], rate=32375.98/min [1250000], rate=32495.67/min [1260000], rate=32418.52/min [1270000], rate=32233.50/min [1280000], rate=32066.81/min [1290000], rate=32089.55/min [1300000], rate=31914.89/min [1310000], rate=31796.12/min [1320000], rate=31667.33/min [1330000], rate=31541.50/min [1340000], rate=31406.25/min [1350000], rate=31431.90/min [1360000], rate=31554.52/min [1370000], rate=31676.30/min [1380000], rate=31785.03/min [1390000], rate=31662.87/min [1400000], rate=31555.22/min [1410000], rate=31461.51/min [1420000], rate=31346.58/min [1430000], rate=31211.35/min [1440000], rate=31135.14/min [1450000], rate=31027.10/min [1460000], rate=30943.13/min [1470000], rate=30839.16/min [1480000], rate=30758.57/min [1490000], rate=30647.93/min [1500000], rate=30570.65/min [1510000], rate=30494.78/min [1520000], rate=30542.53/min [1530000], rate=30630.63/min [1540000], rate=30707.88/min [1550000], rate=30703.20/min [1560000], rate=30688.52/min [1570000], rate=30674.05/min [1580000], rate=30689.54/min [1590000], rate=30863.80/min [1600000], rate=30967.74/min [1610000], rate=30931.80/min [1620000], rate=30925.87/min [1630000], rate=31077.22/min [1640000], rate=31168.83/min [1650000], rate=31259.87/min [1660000], rate=31340.47/min [1670000], rate=31469.85/min [1680000], rate=31588.84/min [1690000], rate=31707.32/min [1700000], rate=31825.27/min [1710000], rate=31932.77/min [1720000], rate=32019.86/min [1730000], rate=32126.28/min [1740000], rate=32232.17/min [1750000], rate=32307.69/min [1760000], rate=32382.70/min [1770000], rate=32447.30/min [1780000], rate=32531.22/min [1790000], rate=32594.84/min [1800000], rate=32658.00/min [1810000], rate=32750.30/min [1820000], rate=32832.23/min [1830000], rate=32913.67/min [1840000], rate=33083.61/min [1850000], rate=33213.64/min [1860000], rate=33283.63/min [1870000], rate=33372.99/min [1880000], rate=33521.55/min [1890000], rate=33609.96/min [1900000], rate=33687.94/min [1910000], rate=33745.58/min [1920000], rate=33802.82/min [1930000], rate=33869.55/min [1940000], rate=33935.86/min [1950000], rate=33981.99/min [1960000], rate=34077.08/min [1970000], rate=34151.98/min [1980000], rate=34305.52/min [1990000], rate=34458.87/min [2000000], rate=34552.26/min [2010000], rate=34605.45/min [2020000], rate=34757.67/min [2030000], rate=34859.76/min [2040000], rate=34931.51/min [2050000], rate=35002.85/min [2060000], rate=35093.70/min [2070000], rate=35184.14/min [2080000], rate=35284.14/min [2090000], rate=35393.73/min [2100000], rate=35472.97/min [2110000], rate=35551.81/min [2120000], rate=35620.27/min [2130000], rate=35708.30/min [2140000], rate=35845.90/min [2150000], rate=36003.35/min [2160000], rate=36110.34/min [2170000], rate=36156.62/min [2180000], rate=36202.60/min [2190000], rate=36248.28/min [2200000], rate=36303.63/min [2210000], rate=36348.68/min [2220000], rate=36393.44/min [2230000], rate=36467.70/min [2240000], rate=36531.67/min [2250000], rate=36595.28/min [2260000], rate=36728.06/min [2270000], rate=36860.62/min [2280000], rate=36913.11/min [2290000], rate=36955.35/min [2300000], rate=37046.98/min [2310000], rate=37118.37/min [2320000], rate=37169.56/min [2330000], rate=37240.28/min [2340000], rate=37330.50/min [2350000], rate=37420.38/min [2360000], rate=37509.93/min [2370000], rate=37589.21/min [2380000], rate=37648.30/min [2390000], rate=37697.16/min [2400000], rate=37785.36/min [2410000], rate=37863.32/min [2420000], rate=37911.23/min [2430000], rate=37958.86/min [2440000], rate=37996.37/min [2450000], rate=38053.33/min [2460000], rate=38100.15/min [2470000], rate=38146.72/min [2480000], rate=38202.82/min [2490000], rate=38278.25/min [2500000], rate=38333.76/min [2510000], rate=38398.78/min [2520000], rate=38463.50/min [2530000], rate=38527.92/min [2540000], rate=38601.82/min [2550000], rate=38675.43/min [2560000], rate=38719.44/min [2570000], rate=38733.99/min [2580000], rate=38748.44/min [2590000], rate=38782.13/min [2600000], rate=38796.32/min [2610000], rate=38829.66/min [2620000], rate=38862.79/min [2630000], rate=38905.33/min [2640000], rate=38947.63/min [2650000], rate=38999.26/min [2660000], rate=39050.65/min [2670000], rate=39101.78/min [2680000], rate=39152.67/min [2690000], rate=39203.30/min [2700000], rate=39253.70/min [2710000], rate=39303.84/min -building interval tree based on /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=50000.00/min [20000], rate=44444.44/min [30000], rate=38297.87/min [40000], rate=38095.24/min [50000], rate=37974.68/min [60000], rate=38297.87/min [70000], rate=40000.00/min [80000], rate=41025.64/min [90000], rate=41860.47/min [100000], rate=42553.19/min [110000], rate=43421.05/min [120000], rate=43373.49/min [130000], rate=44318.18/min [140000], rate=45161.29/min [150000], rate=46153.85/min [160000], rate=46829.27/min [170000], rate=47441.86/min [180000], rate=48000.00/min [190000], rate=47698.74/min [200000], rate=48387.10/min [210000], rate=49218.75/min [220000], rate=50000.00/min [230000], rate=50549.45/min [240000], rate=51063.83/min [250000], rate=51369.86/min [260000], rate=51827.24/min [270000], rate=51923.08/min [280000], rate=52336.45/min [290000], rate=52727.27/min [300000], rate=53412.46/min [310000], rate=53913.04/min [320000], rate=54545.45/min [330000], rate=55307.26/min [340000], rate=56043.96/min [350000], rate=56451.61/min [360000], rate=56992.08/min [370000], rate=56923.08/min [380000], rate=57142.86/min [390000], rate=57073.17/min [400000], rate=57279.24/min [410000], rate=57209.30/min [420000], rate=57534.25/min [430000], rate=57847.53/min [440000], rate=58021.98/min [450000], rate=58315.33/min [460000], rate=58350.95/min [470000], rate=58750.00/min [480000], rate=59016.39/min [490000], rate=59393.94/min [500000], rate=59642.15/min [510000], rate=59882.58/min [520000], rate=60231.66/min [530000], rate=60571.43/min [540000], rate=60674.16/min [550000], rate=60329.07/min [560000], rate=60107.33/min [570000], rate=60211.27/min [580000], rate=60521.74/min [590000], rate=60512.82/min [600000], rate=60402.68/min [610000], rate=60696.52/min [620000], rate=60586.32/min [630000], rate=60191.08/min [640000], rate=59442.72/min [650000], rate=59001.51/min [660000], rate=58493.35/min [670000], rate=58008.66/min [680000], rate=58119.66/min [690000], rate=58146.07/min [700000], rate=58091.29/min [710000], rate=58117.33/min [720000], rate=58064.52/min [730000], rate=57707.51/min [740000], rate=57364.34/min [750000], rate=57106.60/min [760000], rate=57142.86/min [770000], rate=57037.04/min [780000], rate=56934.31/min [790000], rate=57039.71/min [800000], rate=57210.97/min [810000], rate=57311.32/min [820000], rate=57275.90/min [830000], rate=57110.09/min [840000], rate=57013.57/min [850000], rate=56919.64/min [860000], rate=56765.68/min [870000], rate=56677.52/min [880000], rate=56774.19/min [890000], rate=56990.39/min [900000], rate=57022.18/min [910000], rate=57053.29/min [920000], rate=57024.79/min [930000], rate=57113.61/min [940000], rate=57142.86/min [950000], rate=57228.92/min [960000], rate=57256.46/min [970000], rate=57283.46/min [980000], rate=57421.88/min [990000], rate=57725.95/min [1000000], rate=57971.01/min [1010000], rate=58269.23/min [1020000], rate=58508.60/min [1030000], rate=58301.89/min [1040000], rate=57724.33/min [1050000], rate=57220.71/min [1060000], rate=56684.49/min [1070000], rate=56464.38/min [1080000], rate=56347.83/min [1090000], rate=56233.88/min [1100000], rate=56122.45/min [1110000], rate=56107.83/min [1120000], rate=56093.49/min [1130000], rate=56125.83/min [1140000], rate=56157.64/min [1150000], rate=56143.21/min [1160000], rate=55993.56/min [1170000], rate=55714.29/min [1180000], rate=55485.89/min [1190000], rate=55477.86/min [1200000], rate=55512.72/min [1210000], rate=55504.59/min [1220000], rate=55454.55/min [1230000], rate=55530.47/min [1240000], rate=55480.98/min [1250000], rate=55514.43/min [1260000], rate=55465.88/min [1270000], rate=55579.87/min [1280000], rate=55692.53/min [1290000], rate=55723.54/min [1300000], rate=55595.15/min [1310000], rate=55744.68/min [1320000], rate=55892.73/min [1330000], rate=55960.73/min [1340000], rate=56066.95/min [1350000], rate=55708.39/min [1360000], rate=55135.14/min [1370000], rate=53550.49/min [1380000], rate=52671.76/min [1390000], rate=52452.83/min [1400000], rate=52206.34/min [1410000], rate=52029.52/min [1420000], rate=51824.82/min [1430000], rate=51717.90/min [1440000], rate=51551.31/min [1450000], rate=51448.85/min [1460000], rate=51108.52/min [1470000], rate=50457.67/min [1480000], rate=50283.13/min [1490000], rate=50140.21/min [1500000], rate=49944.51/min [1510000], rate=49834.98/min [1520000], rate=49700.27/min [1530000], rate=49621.62/min [1540000], rate=49570.82/min [1550000], rate=49468.09/min [1560000], rate=49445.32/min [1570000], rate=49216.30/min [1580000], rate=48441.49/min [1590000], rate=47867.54/min [1600000], rate=47501.24/min [1610000], rate=47492.63/min [1620000], rate=47437.77/min [1630000], rate=47337.85/min [1640000], rate=47307.69/min [1650000], rate=46919.43/min [1660000], rate=46585.59/min [1670000], rate=46474.95/min [1680000], rate=46006.39/min [1690000], rate=45430.11/min [1700000], rate=44795.78/min [1710000], rate=44686.41/min [1720000], rate=44655.99/min [1730000], rate=44645.16/min [1740000], rate=44749.25/min [1750000], rate=44795.22/min [1760000], rate=44783.72/min [1770000], rate=44772.34/min [1780000], rate=44761.11/min [1790000], rate=44750.00/min [1800000], rate=44757.56/min [1810000], rate=44765.05/min [1820000], rate=44754.10/min [1830000], rate=44743.28/min [1840000], rate=44750.71/min [1850000], rate=44776.12/min [1860000], rate=44837.28/min [1870000], rate=44897.96/min [1880000], rate=44904.46/min [1890000], rate=44910.89/min [1900000], rate=44864.23/min [1910000], rate=44870.79/min [1920000], rate=44877.29/min [1930000], rate=44970.87/min [1940000], rate=44820.95/min [1950000], rate=44436.00/min [1960000], rate=44061.45/min [1970000], rate=43648.45/min [1980000], rate=43389.34/min [1990000], rate=43402.40/min [2000000], rate=43431.05/min [2010000], rate=43459.46/min [2020000], rate=43487.62/min [2030000], rate=43500.00/min [2040000], rate=43496.80/min [2050000], rate=43188.20/min [2060000], rate=43081.21/min [2070000], rate=43095.07/min [2080000], rate=42871.87/min [2090000], rate=42609.58/min [2100000], rate=42409.96/min [2110000], rate=42200.00/min [2120000], rate=42021.80/min [2130000], rate=41860.47/min [2140000], rate=41661.26/min [2150000], rate=41612.90/min [2160000], rate=41739.13/min [2170000], rate=41811.18/min [2180000], rate=41842.61/min [2190000], rate=41820.50/min [2200000], rate=41918.07/min [2210000], rate=42001.90/min [2220000], rate=42085.31/min [2230000], rate=42181.59/min [2240000], rate=42264.15/min [2250000], rate=42346.30/min [2260000], rate=42229.83/min [2270000], rate=41753.53/min [2280000], rate=41542.67/min [2290000], rate=41261.26/min [2300000], rate=40961.71/min [2310000], rate=40752.72/min [2320000], rate=40559.44/min [2330000], rate=40357.97/min [2340000], rate=40137.22/min [2350000], rate=39943.34/min [2360000], rate=39686.10/min [2370000], rate=39521.96/min [2380000], rate=39425.73/min [2390000], rate=39031.03/min [2400000], rate=38751.35/min [2410000], rate=38652.77/min [2420000], rate=38575.98/min [2430000], rate=38500.13/min [2440000], rate=38425.20/min [2450000], rate=38361.17/min [2460000], rate=38297.87/min [2470000], rate=38225.43/min [2480000], rate=38183.22/min [2490000], rate=38141.43/min [2500000], rate=38129.13/min [2510000], rate=38088.01/min [2520000], rate=38056.88/min [2530000], rate=38035.58/min [2540000], rate=38023.95/min [2550000], rate=38012.42/min [2560000], rate=37991.59/min [2570000], rate=37970.94/min [2580000], rate=37969.09/min [2590000], rate=37957.99/min [2600000], rate=37946.97/min [2610000], rate=37936.05/min [2620000], rate=37934.36/min [2630000], rate=37914.46/min [2640000], rate=37912.88/min [2650000], rate=37902.26/min [2660000], rate=37891.74/min [2670000], rate=37890.26/min [2680000], rate=37897.71/min [2690000], rate=37896.22/min [2700000], rate=37921.35/min [2710000], rate=37919.78/min -building interval tree based on /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=42857.14/min [20000], rate=44444.44/min [30000], rate=45000.00/min [40000], rate=46153.85/min [50000], rate=42253.52/min [60000], rate=40449.44/min [70000], rate=42000.00/min [80000], rate=42857.14/min [90000], rate=44262.30/min [100000], rate=45801.53/min [110000], rate=46478.87/min [120000], rate=47682.12/min [130000], rate=49367.09/min [140000], rate=48275.86/min [150000], rate=46391.75/min [160000], rate=45283.02/min [170000], rate=44155.84/min [180000], rate=41379.31/min [190000], rate=40282.69/min [200000], rate=39344.26/min [210000], rate=38769.23/min [220000], rate=37931.03/min [230000], rate=38016.53/min [240000], rate=38095.24/min [250000], rate=38167.94/min [260000], rate=38235.29/min [270000], rate=38207.55/min [280000], rate=38443.94/min [290000], rate=38580.93/min [300000], rate=38626.61/min [310000], rate=38830.90/min [320000], rate=38945.23/min [330000], rate=38976.38/min [340000], rate=38709.68/min [350000], rate=38181.82/min [360000], rate=37828.37/min [370000], rate=37819.42/min [380000], rate=38127.09/min [390000], rate=38613.86/min [400000], rate=38772.21/min [410000], rate=38618.52/min [420000], rate=38769.23/min [430000], rate=38796.99/min [440000], rate=38938.05/min 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rate=41214.24/min [3540000], rate=41266.76/min [3550000], rate=41319.11/min [3560000], rate=41371.30/min [3570000], rate=41423.32/min [3580000], rate=41483.20/min [3590000], rate=41534.90/min [3600000], rate=41594.45/min [3610000], rate=41653.85/min [3620000], rate=41721.09/min [3630000], rate=41788.18/min [3640000], rate=41855.12/min [3650000], rate=41913.88/min [3660000], rate=41988.53/min [3670000], rate=42046.97/min [3680000], rate=42113.29/min [3690000], rate=42171.43/min [3700000], rate=42229.41/min [2720000], rate=37935.84/min [2730000], rate=37978.21/min [2740000], rate=38029.15/min [2750000], rate=38097.44/min [2760000], rate=38147.89/min [2770000], rate=38189.34/min [2780000], rate=38239.34/min [2790000], rate=38280.36/min [2800000], rate=38321.17/min [2810000], rate=38353.05/min [2820000], rate=38402.18/min [2830000], rate=38442.38/min [2840000], rate=38482.38/min [2850000], rate=38522.19/min [2860000], rate=38579.14/min [2870000], rate=38627.19/min [2880000], rate=38683.68/min [2890000], rate=38739.95/min [2900000], rate=38787.34/min [2910000], rate=38843.16/min [2920000], rate=38907.40/min [2930000], rate=38980.04/min [2940000], rate=39043.82/min [2950000], rate=39098.74/min [2960000], rate=39153.44/min [2970000], rate=39207.92/min [2980000], rate=39270.81/min [2990000], rate=39333.48/min [3000000], rate=39395.93/min [3010000], rate=39458.16/min [3020000], rate=39528.80/min [3030000], rate=39590.59/min [3040000], rate=39652.17/min [3050000], rate=39722.16/min [3060000], rate=39791.94/min [3070000], rate=39861.50/min [3080000], rate=39922.23/min [3090000], rate=40000.00/min [3100000], rate=40068.94/min [3110000], rate=40146.30/min [3120000], rate=40214.82/min [3130000], rate=40257.23/min [3140000], rate=40308.09/min [3150000], rate=40358.74/min [3160000], rate=40426.44/min [3170000], rate=40485.31/min [3180000], rate=40543.99/min [3190000], rate=40602.46/min [3200000], rate=40660.74/min [3210000], rate=40718.82/min [3220000], rate=40776.70/min [3230000], rate=40842.99/min [3240000], rate=40909.09/min [3250000], rate=40974.99/min [3260000], rate=41049.32/min [3270000], rate=41106.22/min [3280000], rate=41000.00/min [3290000], rate=40937.37/min [3300000], rate=40883.75/min [3310000], rate=40847.39/min [3320000], rate=40802.95/min [3330000], rate=40767.19/min [3340000], rate=40723.43/min [3350000], rate=40696.50/min [3360000], rate=40669.76/min [3370000], rate=40659.56/min [3380000], rate=40657.58/min [3390000], rate=40655.61/min [3400000], rate=40645.55/min [3410000], rate=40635.55/min [3420000], rate=40617.58/min [3430000], rate=40615.75/min [3440000], rate=40605.94/min [3450000], rate=40572.32/min [3460000], rate=40546.88/min [3470000], rate=40553.17/min [3480000], rate=40559.44/min [3490000], rate=40565.67/min [3500000], rate=40579.71/min [3510000], rate=40585.85/min [3520000], rate=40599.77/min [3530000], rate=40613.61/min [3540000], rate=40635.16/min [3550000], rate=40648.85/min [3560000], rate=40670.22/min [3570000], rate=40691.49/min [3580000], rate=40720.38/min [3590000], rate=40710.64/min [3600000], rate=40723.98/min [3610000], rate=40737.26/min [3620000], rate=40765.77/min [3630000], rate=40778.88/min [3640000], rate=40799.55/min [3650000], rate=40812.52/min [3660000], rate=40848.21/min [3670000], rate=40883.77/min [3680000], rate=40911.62/min [3690000], rate=40946.92/min [3700000], rate=40974.53/min [2720000], rate=39372.74/min [2730000], rate=39422.38/min [2740000], rate=39481.27/min [2750000], rate=39530.43/min [2760000], rate=39588.81/min [2770000], rate=39646.95/min [2780000], rate=39695.38/min [2790000], rate=39762.47/min [2800000], rate=39810.43/min [2810000], rate=39877.01/min [2820000], rate=39943.34/min [2830000], rate=39943.54/min [2840000], rate=39775.91/min [2850000], rate=39629.20/min [2860000], rate=39530.06/min [2870000], rate=39423.08/min [2880000], rate=39299.52/min [2890000], rate=39221.90/min [2900000], rate=39198.02/min [2910000], rate=39112.90/min [2920000], rate=39020.04/min [2930000], rate=38919.64/min [2940000], rate=38871.75/min [2950000], rate=38781.77/min [2960000], rate=38692.81/min [2970000], rate=38747.55/min [2980000], rate=38802.08/min [2990000], rate=38747.30/min [3000000], rate=38659.79/min [3010000], rate=38597.99/min [3020000], rate=38553.19/min [3030000], rate=38516.95/min [3040000], rate=38489.13/min [3050000], rate=38469.62/min [3060000], rate=38434.16/min [3070000], rate=38407.01/min [3080000], rate=38380.06/min [3090000], rate=38361.27/min [3100000], rate=38350.52/min [3110000], rate=38339.84/min [3120000], rate=38329.24/min [3130000], rate=38318.71/min [3140000], rate=38308.26/min [3150000], rate=38367.84/min [3160000], rate=38388.34/min [3170000], rate=38377.72/min [3180000], rate=38382.62/min [3190000], rate=38387.48/min [3200000], rate=38400.00/min [3210000], rate=38420.11/min [3220000], rate=38440.11/min [3230000], rate=38437.13/min [3240000], rate=38464.58/min [3250000], rate=38499.51/min [3260000], rate=38534.28/min [3270000], rate=38561.32/min [3280000], rate=38580.67/min [3290000], rate=38615.02/min [3300000], rate=38649.23/min [3310000], rate=38683.29/min [3320000], rate=38717.20/min [3330000], rate=38750.97/min [3340000], rate=38792.10/min [3350000], rate=38833.08/min [3360000], rate=38873.89/min [3370000], rate=38914.55/min [3380000], rate=38970.02/min [3390000], rate=39017.84/min [3400000], rate=39058.01/min [3410000], rate=39112.98/min [3420000], rate=39167.78/min [3430000], rate=39214.94/min [3440000], rate=39261.94/min [3450000], rate=39323.71/min [3460000], rate=39385.32/min [3470000], rate=39439.29/min [3480000], rate=39493.10/min [3490000], rate=39554.21/min [3500000], rate=39622.64/min [3510000], rate=39683.44/min [3520000], rate=39706.71/min [3530000], rate=39722.43/min [3540000], rate=39745.51/min [3550000], rate=39761.06/min [3560000], rate=39783.94/min [3570000], rate=39806.73/min [3580000], rate=39836.80/min [3590000], rate=39859.36/min [3600000], rate=39881.83/min [3610000], rate=39911.55/min [3620000], rate=39941.15/min [3630000], rate=39970.64/min [3640000], rate=40007.33/min [3650000], rate=40043.88/min [3660000], rate=40087.62/min [3670000], rate=40123.91/min [3680000], rate=40167.36/min [3690000], rate=40210.68/min [3700000], rate=40261.15/min [3710000], rate=40304.18/min [2720000], rate=32284.87/min [2730000], rate=32365.15/min [2740000], rate=32432.43/min [2750000], rate=32448.38/min [2760000], rate=32476.96/min [2770000], rate=32499.02/min [2780000], rate=32508.28/min [2790000], rate=32523.80/min [2800000], rate=32532.92/min [2810000], rate=32560.83/min [2820000], rate=32576.05/min [2830000], rate=32597.43/min [2840000], rate=32618.68/min [2850000], rate=32646.05/min [2860000], rate=32673.27/min [2870000], rate=32700.34/min [2880000], rate=32683.94/min [2890000], rate=32723.16/min [2900000], rate=32756.02/min [2910000], rate=32801.05/min [2920000], rate=32821.28/min [2930000], rate=32853.67/min [2940000], rate=32879.78/min [2950000], rate=32917.98/min [2960000], rate=32956.02/min [2970000], rate=32987.78/min [2980000], rate=33025.49/min [2990000], rate=33063.03/min [3000000], rate=33106.49/min [3010000], rate=33143.70/min [3020000], rate=33186.81/min [3030000], rate=33235.83/min [3040000], rate=33290.75/min [3050000], rate=33345.48/min [3060000], rate=33400.04/min [3070000], rate=33442.27/min [3080000], rate=33484.33/min [3090000], rate=33532.28/min [3100000], rate=33580.07/min [3110000], rate=33627.68/min [3120000], rate=33675.12/min [3130000], rate=33728.45/min [3140000], rate=33775.55/min [3150000], rate=33822.48/min [3160000], rate=33869.24/min [3170000], rate=33915.83/min [3180000], rate=33962.26/min [3190000], rate=34014.57/min [3200000], rate=34066.71/min [3210000], rate=34124.73/min [3220000], rate=34176.54/min [3230000], rate=34228.19/min [3240000], rate=34285.71/min [3250000], rate=34343.08/min [3260000], rate=34406.33/min [3270000], rate=34463.38/min [3280000], rate=34520.26/min [3290000], rate=34583.04/min [3300000], rate=34645.67/min [3310000], rate=34708.14/min [3320000], rate=34764.40/min [3330000], rate=34826.56/min [3340000], rate=34894.65/min [3350000], rate=34956.52/min [3360000], rate=35018.24/min [3370000], rate=35085.89/min [3380000], rate=35153.41/min [3390000], rate=35214.68/min [3400000], rate=35281.91/min [3410000], rate=35342.89/min [3420000], rate=35409.84/min [3430000], rate=35439.99/min [3440000], rate=35457.83/min [3450000], rate=35475.58/min [3460000], rate=35487.18/min [3470000], rate=35498.72/min [3480000], rate=35516.24/min [3490000], rate=35533.68/min [3500000], rate=35551.04/min [3510000], rate=35586.35/min [3520000], rate=35609.51/min [3530000], rate=35632.57/min [3540000], rate=35661.52/min [3550000], rate=35690.35/min [3560000], rate=35707.12/min [3570000], rate=35735.74/min [3580000], rate=35764.24/min [3590000], rate=35792.62/min [3600000], rate=35814.96/min [3610000], rate=35849.06/min [3620000], rate=35883.03/min [3630000], rate=35916.89/min [3640000], rate=35950.62/min [3650000], rate=35990.14/min [3660000], rate=36023.62/min [3670000], rate=36056.98/min [3680000], rate=36090.23/min [3690000], rate=36123.35/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir --filt_file /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 0.00 reads per min processed... 0.00 reads per min processed... 18000000.00 reads per min processed... 24000000.00 reads per min processed... 15000000.00 reads per min processed... 18000000.00 reads per min processed... 14000000.00 reads per min processed... 16000000.00 reads per min processed... 18000000.00 reads per min processed... 15000000.00 reads per min processed... 9428571.43 reads per min processed... 8000000.00 reads per min processed... 7090909.09 reads per min processed... 7000000.00 reads per min processed... 6428571.43 reads per min processed... 6400000.00 reads per min processed... 6000000.00 reads per min processed... 5684210.53 reads per min processed... 5700000.00 reads per min processed... 5454545.45 reads per min processed... 5250000.00 reads per min processed... 5280000.00 reads per min processed... 5111111.11 reads per min processed... 4965517.24 reads per min processed... 5000000.00 reads per min processed... 4875000.00 reads per min processed... 4764705.88 reads per min processed... 4800000.00 reads per min processed... 4702702.70 reads per min processed... 4736842.11 reads per min processed... 4650000.00 reads per min processed... 4571428.57 reads per min processed... 4500000.00 reads per min processed... 4533333.33 reads per min processed... 4468085.11 reads per min processed... 4408163.27 reads per min processed... 4440000.00 reads per min processed... 4384615.38 reads per min processed... 4415094.34 reads per min processed... 4363636.36 reads per min processed... 4392857.14 reads per min processed... 4344827.59 reads per min processed... 4300000.00 reads per min processed... 4327868.85 reads per min processed... 4285714.29 reads per min processed... 4312500.00 reads per min processed... 4272727.27 reads per min processed... 4298507.46 reads per min processed... 4260869.57 reads per min processed... 4285714.29 reads per min processed... 4250000.00 reads per min processed... 4216216.22 reads per min processed... 4240000.00 reads per min processed... 4263157.89 reads per min processed... 4230769.23 reads per min processed... 4253164.56 reads per min processed... 4222222.22 reads per min processed... 4243902.44 reads per min processed... 4265060.24 reads per min processed... 4285714.29 reads per min processed... 4357142.86 reads per min processed... 4376470.59 reads per min processed... 4395348.84 reads per min processed... 4465116.28 reads per min processed... 4482758.62 reads per min processed... 4551724.14 reads per min processed... 4568181.82 reads per min processed... 4584269.66 reads per min processed... 4600000.00 reads per min processed... 4565217.39 reads per min processed... 4580645.16 reads per min processed... 4547368.42 reads per min processed... 4562500.00 reads per min processed... 4530612.24 reads per min processed... 4545454.55 reads per min processed... 4514851.49 reads per min processed... 4529411.76 reads per min processed... 4543689.32 reads per min processed... 4514285.71 reads per min processed... 4528301.89 reads per min processed... 4500000.00 reads per min processed... 4513761.47 reads per min processed... 4486486.49 reads per min processed... 4500000.00 reads per min processed... 4473684.21 reads per min processed... 4486956.52 reads per min processed... 4461538.46 reads per min processed... 4474576.27 reads per min processed... 4450000.00 reads per min processed... 4462809.92 reads per min processed... 4475409.84 reads per min processed... 4451612.90 reads per min processed... 4464000.00 reads per min processed... 4476190.48 reads per min processed... 4453125.00 reads per min processed... 4465116.28 reads per min processed... 4409090.91 reads per min processed... 4421052.63 reads per min processed... 4400000.00 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.RSQuzwCoEQ/1173_JXL_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -6315362.341498 EM: Round [1] log likelihood: -6314865.795690 EM: Round [2] log likelihood: -6314692.091017 EM: Round [3] log likelihood: -6314611.576214 EM: Round [4] log likelihood: -6314568.606075 EM: Round [5] log likelihood: -6314543.610666 EM: Round [6] log likelihood: -6314528.105856 EM: Round [7] log likelihood: -6314517.946328 EM: Round [8] log likelihood: -6314510.955096 EM: Round [9] log likelihood: -6314505.928754 EM: Round [10] log likelihood: -6314502.173948 EM: Round [11] log likelihood: -6314499.276120 EM: Round [12] log likelihood: -6314496.978291 EM: Round [13] log likelihood: -6314495.115228 EM: Round [14] log likelihood: -6314493.576778 EM: Round [15] log likelihood: -6314492.286957 EM: Round [16] log likelihood: -6314491.191716 EM: Round [17] log likelihood: -6314490.251563 EM: Round [18] log likelihood: -6314489.436966 EM: Round [19] log likelihood: -6314488.725393 EM: Round [20] log likelihood: -6314488.099359 EM: Round [21] log likelihood: -6314487.545080 EM: Round [22] log likelihood: -6314487.051548 EM: Round [23] log likelihood: -6314486.609866 EM: Round [24] log likelihood: -6314486.212762 EM: Round [25] log likelihood: -6314485.854239 EM: Round [26] log likelihood: -6314485.529304 EM: Round [27] log likelihood: -6314485.233770 EM: Round [28] log likelihood: -6314484.964099 EM: Round [29] log likelihood: -6314484.717284 EM: Round [30] log likelihood: -6314484.490748 EM: Round [31] log likelihood: -6314484.282280 EM: Round [32] log likelihood: -6314484.089963 EM: Round [33] log likelihood: -6314483.912137 EM: Round [34] log likelihood: -6314483.747350 EM: Round [35] log likelihood: -6314483.594333 EM: Round [36] log likelihood: -6314483.451969 EM: Round [37] log likelihood: -6314483.319275 EM: Round [38] log likelihood: -6314483.195379 EM: Round [39] log likelihood: -6314483.079506 EM: Round [40] log likelihood: -6314482.970971 EM: Round [41] log likelihood: -6314482.869156 EM: Round [42] log likelihood: -6314482.773513 EM: Round [43] log likelihood: -6314482.683549 EM: Round [44] log likelihood: -6314482.598817 EM: Round [45] log likelihood: -6314482.518920 EM: Round [46] log likelihood: -6314482.443494 EM: Round [47] log likelihood: -6314482.372213 EM: Round [48] log likelihood: -6314482.304778 EM: Round [49] log likelihood: -6314482.240919 EM: Round [50] log likelihood: -6314482.180391 EM: Round [51] log likelihood: -6314482.122967 EM: Round [52] log likelihood: -6314482.068443 EM: Round [53] log likelihood: -6314482.016629 EM: Round [54] log likelihood: -6314481.967353 EM: Round [55] log likelihood: -6314481.920456 EM: Round [56] log likelihood: -6314481.875790 EM: Round [57] log likelihood: -6314481.833222 EM: Round [58] log likelihood: -6314481.792625 EM: Round [59] log likelihood: -6314481.753885 EM: Round [60] log likelihood: -6314481.716895 EM: Round [61] log likelihood: -6314481.681555 EM: Round [62] log likelihood: -6314481.647772 EM: Round [63] log likelihood: -6314481.615462 EM: Round [64] log likelihood: -6314481.584544 EM: Round [65] log likelihood: -6314481.554944 EM: Round [66] log likelihood: -6314481.526591 EM: Round [67] log likelihood: -6314481.499422 EM: Round [68] log likelihood: -6314481.473375 EM: Round [69] log likelihood: -6314481.448393 EM: Round [70] log likelihood: -6314481.424423 EM: Round [71] log likelihood: -6314481.401414 EM: Round [72] log likelihood: -6314481.379320 EM: Round [73] log likelihood: -6314481.358095 EM: Round [74] log likelihood: -6314481.337700 EM: Round [75] log likelihood: -6314481.318093 EM: Round [76] log likelihood: -6314481.299238 EM: Round [77] log likelihood: -6314481.281101 EM: Round [78] log likelihood: -6314481.263648 EM: Round [79] log likelihood: -6314481.246848 EM: Round [80] log likelihood: -6314481.230672 EM: Round [81] log likelihood: -6314481.215092 EM: Round [82] log likelihood: -6314481.200081 EM: Round [83] log likelihood: -6314481.185615 EM: Round [84] log likelihood: -6314481.171670 EM: Round [85] log likelihood: -6314481.158223 EM: Round [86] log likelihood: -6314481.145253 EM: Round [87] log likelihood: -6314481.132740 EM: Round [88] log likelihood: -6314481.120665 EM: Round [89] log likelihood: -6314481.109010 EM: Round [90] log likelihood: -6314481.097757 EM: Round [91] log likelihood: -6314481.086889 EM: Round [92] log likelihood: -6314481.076392 EM: Round [93] log likelihood: -6314481.066250 EM: Round [94] log likelihood: -6314481.056449 EM: Round [95] log likelihood: -6314481.046975 EM: Round [96] log likelihood: -6314481.037815 EM: Round [97] log likelihood: -6314481.028958 EM: Round [98] log likelihood: -6314481.020391 EM: Round [99] log likelihood: -6314481.012103 EM: Round [100] log likelihood: -6314481.004084 EM: Round [101] log likelihood: -6314480.996323 EM: Round [102] log likelihood: -6314480.988810 EM: Round [103] log likelihood: -6314480.981537 EM: Round [104] log likelihood: -6314480.974493 EM: Round [105] log likelihood: -6314480.967671 EM: Round [106] log likelihood: -6314480.961063 EM: Round [107] log likelihood: -6314480.954661 EM: Round [108] log likelihood: -6314480.948457 EM: Round [109] log likelihood: -6314480.942443 EM: Round [110] log likelihood: -6314480.936615 EM: Round [111] log likelihood: -6314480.930963 EM: Round [112] log likelihood: -6314480.925483 EM: Round [113] log likelihood: -6314480.920169 EM: Round [114] log likelihood: -6314480.915014 EM: Round [115] log likelihood: -6314480.910012 EM: Round [116] log likelihood: -6314480.905160 EM: Round [117] log likelihood: -6314480.900451 EM: Round [118] log likelihood: -6314480.895881 EM: Round [119] log likelihood: -6314480.891444 EM: Round [120] log likelihood: -6314480.887138 EM: Round [121] log likelihood: -6314480.882956 EM: Round [122] log likelihood: -6314480.878895 EM: Round [123] log likelihood: -6314480.874951 EM: Round [124] log likelihood: -6314480.871120 EM: Round [125] log likelihood: -6314480.867398 EM: Round [126] log likelihood: -6314480.863782 EM: Round [127] log likelihood: -6314480.860268 EM: Round [128] log likelihood: -6314480.856853 EM: Round [129] log likelihood: -6314480.853535 EM: Round [130] log likelihood: -6314480.850309 EM: Round [131] log likelihood: -6314480.847172 EM: Round [132] log likelihood: -6314480.844123 EM: Round [133] log likelihood: -6314480.841158 EM: Round [134] log likelihood: -6314480.838275 EM: Round [135] log likelihood: -6314480.835470 EM: Round [136] log likelihood: -6314480.832743 EM: Round [137] log likelihood: -6314480.830089 EM: Round [138] log likelihood: -6314480.827508 EM: Round [139] log likelihood: -6314480.824996 EM: Round [140] log likelihood: -6314480.822552 EM: Round [141] log likelihood: -6314480.820174 EM: Round [142] log likelihood: -6314480.817859 EM: Round [143] log likelihood: -6314480.815606 EM: Round [144] log likelihood: -6314480.813413 EM: Round [145] log likelihood: -6314480.811278 EM: Round [146] log likelihood: -6314480.809199 EM: Round [147] log likelihood: -6314480.807176 EM: Round [148] log likelihood: -6314480.805205 EM: Round [149] log likelihood: -6314480.803286 EM: Round [150] log likelihood: -6314480.801417 EM: Round [151] log likelihood: -6314480.799597 EM: Round [152] log likelihood: -6314480.797824 EM: Round [153] log likelihood: -6314480.796097 EM: Round [154] log likelihood: -6314480.794414 EM: Round [155] log likelihood: -6314480.792775 EM: Round [156] log likelihood: -6314480.791178 EM: Round [157] log likelihood: -6314480.789622 EM: Round [158] log likelihood: -6314480.788106 EM: Round [159] log likelihood: -6314480.786628 EM: Round [160] log likelihood: -6314480.785188 EM: Round [161] log likelihood: -6314480.783784 EM: Round [162] log likelihood: -6314480.782416 EM: Round [163] log likelihood: -6314480.781082 EM: Round [164] log likelihood: -6314480.779782 EM: Round [165] log likelihood: -6314480.778515 EM: Round [166] log likelihood: -6314480.777279 EM: Round [167] log likelihood: -6314480.776075 EM: Round [168] log likelihood: -6314480.774900 EM: Round [169] log likelihood: -6314480.773755 EM: Round [170] log likelihood: -6314480.772638 EM: Round [171] log likelihood: -6314480.771549 EM: Round [172] log likelihood: -6314480.770487 EM: Round [173] log likelihood: -6314480.769451 EM: Round [174] log likelihood: -6314480.768441 EM: Round [175] log likelihood: -6314480.767455 EM: Round [176] log likelihood: -6314480.766494 EM: Round [177] log likelihood: -6314480.765556 EM: Round [178] log likelihood: -6314480.764642 EM: Round [179] log likelihood: -6314480.763749 EM: Round [180] log likelihood: -6314480.762879 EM: Round [181] log likelihood: -6314480.762029 EM: Round [182] log likelihood: -6314480.761201 EM: Round [183] log likelihood: -6314480.760392 EM: Round [184] log likelihood: -6314480.759603 EM: Round [185] log likelihood: -6314480.758833 EM: Round [186] log likelihood: -6314480.758082 EM: Round [187] log likelihood: -6314480.757349 EM: Round [188] log likelihood: -6314480.756634 EM: Round [189] log likelihood: -6314480.755935 EM: Round [190] log likelihood: -6314480.755254 EM: Round [191] log likelihood: -6314480.754589 EM: Round [192] log likelihood: -6314480.753940 EM: Round [193] log likelihood: -6314480.753306 EM: Round [194] log likelihood: -6314480.752687 EM: Round [195] log likelihood: -6314480.752084 EM: Round [196] log likelihood: -6314480.751494 EM: Round [197] log likelihood: -6314480.750919 EM: Round [198] log likelihood: -6314480.750357 EM: Round [199] log likelihood: -6314480.749809 EM: Round [200] log likelihood: -6314480.749274 EM: Round [201] log likelihood: -6314480.748751 EM: Round [202] log likelihood: -6314480.748241 EM: Round [203] log likelihood: -6314480.747743 EM: Round [204] log likelihood: -6314480.747256 EM: Round [205] log likelihood: -6314480.746781 EM: Round [206] log likelihood: -6314480.746318 EM: Round [207] log likelihood: -6314480.745865 EM: Round [208] log likelihood: -6314480.745423 EM: Round [209] log likelihood: -6314480.744991 EM: Round [210] log likelihood: -6314480.744569 EM: Round [211] log likelihood: -6314480.744157 EM: Round [212] log likelihood: -6314480.743755 EM: Round [213] log likelihood: -6314480.743362 EM: Round [214] log likelihood: -6314480.742979 EM: Round [215] log likelihood: -6314480.742604 EM: Round [216] log likelihood: -6314480.742238 EM: Round [217] log likelihood: -6314480.741881 EM: Round [218] log likelihood: -6314480.741532 EM: Round [219] log likelihood: -6314480.741191 EM: Round [220] log likelihood: -6314480.740858 EM: Round [221] log likelihood: -6314480.740533 EM: Round [222] log likelihood: -6314480.740215 EM: Round [223] log likelihood: -6314480.739905 EM: Round [224] log likelihood: -6314480.739602 EM: Round [225] log likelihood: -6314480.739305 EM: Round [226] log likelihood: -6314480.739016 EM: Round [227] log likelihood: -6314480.738734 EM: Round [228] log likelihood: -6314480.738458 EM: Round [229] log likelihood: -6314480.738188 EM: Round [230] log likelihood: -6314480.737924 EM: Round [231] log likelihood: -6314480.737667 EM: Round [232] log likelihood: -6314480.737416 EM: Round [233] log likelihood: -6314480.737170 EM: Round [234] log likelihood: -6314480.736930 EM: Round [235] log likelihood: -6314480.736696 EM: Round [236] log likelihood: -6314480.736466 EM: Round [237] log likelihood: -6314480.736243 EM: Round [238] log likelihood: -6314480.736024 EM: Round [239] log likelihood: -6314480.735810 EM: Round [240] log likelihood: -6314480.735601 EM: Round [241] log likelihood: -6314480.735397 EM: Round [242] log likelihood: -6314480.735198 EM: Round [243] log likelihood: -6314480.735003 EM: Round [244] log likelihood: -6314480.734813 EM: Round [245] log likelihood: -6314480.734627 EM: Round [246] log likelihood: -6314480.734445 EM: Round [247] log likelihood: -6314480.734268 EM: Round [248] log likelihood: -6314480.734094 EM: Round [249] log likelihood: -6314480.733925 EM: Round [250] log likelihood: -6314480.733759 EM: Round [251] log likelihood: -6314480.733597 EM: Round [252] log likelihood: -6314480.733439 EM: Round [253] log likelihood: -6314480.733284 EM: Round [254] log likelihood: -6314480.733133 EM: Round [255] log likelihood: -6314480.732986 EM: Round [256] log likelihood: -6314480.732841 EM: Round [257] log likelihood: -6314480.732700 EM: Round [258] log likelihood: -6314480.732562 EM: Round [259] log likelihood: -6314480.732428 EM: Round [260] log likelihood: -6314480.732296 EM: Round [261] log likelihood: -6314480.732167 EM: Round [262] log likelihood: -6314480.732042 EM: Round [263] log likelihood: -6314480.731919 EM: Round [264] log likelihood: -6314480.731799 EM: Round [265] log likelihood: -6314480.731681 EM: Round [266] log likelihood: -6314480.731567 EM: Round [267] log likelihood: -6314480.731454 EM: Round [268] log likelihood: -6314480.731345 EM: Round [269] log likelihood: -6314480.731238 EM: Round [270] log likelihood: -6314480.731133 EM: Round [271] log likelihood: -6314480.731031 EM: Round [272] log likelihood: -6314480.730931 EM: Round [273] log likelihood: -6314480.730833 EM: Stopping iterations at round 273 due to insufficient improvement in likelihood. EM: Starting log likelihood: -6311073.252488 EM: Round [1] log likelihood: -6310702.597487 EM: Round [2] log likelihood: -6310577.039272 EM: Round [3] log likelihood: -6310520.988758 EM: Round [4] log likelihood: -6310492.260425 EM: Round [5] log likelihood: -6310476.285362 EM: Round [6] log likelihood: -6310466.849644 EM: Round [7] log likelihood: -6310460.970334 EM: Round [8] log likelihood: -6310457.114991 EM: Round [9] log likelihood: -6310454.459328 EM: Round [10] log likelihood: -6310452.543922 EM: Round [11] log likelihood: -6310451.104588 EM: Round [12] log likelihood: -6310449.984510 EM: Round [13] log likelihood: -6310449.087308 EM: Round [14] log likelihood: -6310448.351484 EM: Round [15] log likelihood: -6310447.736278 EM: Round [16] log likelihood: -6310447.213700 EM: Round [17] log likelihood: -6310446.763900 EM: Round [18] log likelihood: -6310446.372405 EM: Round [19] log likelihood: -6310446.028403 EM: Round [20] log likelihood: -6310445.723648 EM: Round [21] log likelihood: -6310445.451735 EM: Round [22] log likelihood: -6310445.207611 EM: Round [23] log likelihood: -6310444.987228 EM: Round [24] log likelihood: -6310444.787306 EM: Round [25] log likelihood: -6310444.605154 EM: Round [26] log likelihood: -6310444.438543 EM: Round [27] log likelihood: -6310444.285606 EM: Round [28] log likelihood: -6310444.144772 EM: Round [29] log likelihood: -6310444.014702 EM: Round [30] log likelihood: -6310443.894250 EM: Round [31] log likelihood: -6310443.782431 EM: Round [32] log likelihood: -6310443.678388 EM: Round [33] log likelihood: -6310443.581377 EM: Round [34] log likelihood: -6310443.490746 EM: Round [35] log likelihood: -6310443.405920 EM: Round [36] log likelihood: -6310443.326392 EM: Round [37] log likelihood: -6310443.251712 EM: Round [38] log likelihood: -6310443.181481 EM: Round [39] log likelihood: -6310443.115341 EM: Round [40] log likelihood: -6310443.052972 EM: Round [41] log likelihood: -6310442.994085 EM: Round [42] log likelihood: -6310442.938423 EM: Round [43] log likelihood: -6310442.885749 EM: Round [44] log likelihood: -6310442.835853 EM: Round [45] log likelihood: -6310442.788540 EM: Round [46] log likelihood: -6310442.743635 EM: Round [47] log likelihood: -6310442.700979 EM: Round [48] log likelihood: -6310442.660423 EM: Round [49] log likelihood: -6310442.621835 EM: Round [50] log likelihood: -6310442.585090 EM: Round [51] log likelihood: -6310442.550076 EM: Round [52] log likelihood: -6310442.516687 EM: Round [53] log likelihood: -6310442.484828 EM: Round [54] log likelihood: -6310442.454408 EM: Round [55] log likelihood: -6310442.425346 EM: Round [56] log likelihood: -6310442.397564 EM: Round [57] log likelihood: -6310442.370992 EM: Round [58] log likelihood: -6310442.345563 EM: Round [59] log likelihood: -6310442.321215 EM: Round [60] log likelihood: -6310442.297891 EM: Round [61] log likelihood: -6310442.275538 EM: Round [62] log likelihood: -6310442.254104 EM: Round [63] log likelihood: -6310442.233543 EM: Round [64] log likelihood: -6310442.213811 EM: Round [65] log likelihood: -6310442.194867 EM: Round [66] log likelihood: -6310442.176671 EM: Round [67] log likelihood: -6310442.159188 EM: Round [68] log likelihood: -6310442.142382 EM: Round [69] log likelihood: -6310442.126222 EM: Round [70] log likelihood: -6310442.110678 EM: Round [71] log likelihood: -6310442.095720 EM: Round [72] log likelihood: -6310442.081321 EM: Round [73] log likelihood: -6310442.067457 EM: Round [74] log likelihood: -6310442.054102 EM: Round [75] log likelihood: -6310442.041234 EM: Round [76] log likelihood: -6310442.028832 EM: Round [77] log likelihood: -6310442.016875 EM: Round [78] log likelihood: -6310442.005343 EM: Round [79] log likelihood: -6310441.994218 EM: Round [80] log likelihood: -6310441.983484 EM: Round [81] log likelihood: -6310441.973122 EM: Round [82] log likelihood: -6310441.963118 EM: Round [83] log likelihood: -6310441.953457 EM: Round [84] log likelihood: -6310441.944124 EM: Round [85] log likelihood: -6310441.935107 EM: Round [86] log likelihood: -6310441.926391 EM: Round [87] log likelihood: -6310441.917966 EM: Round [88] log likelihood: -6310441.909819 EM: Round [89] log likelihood: -6310441.901939 EM: Round [90] log likelihood: -6310441.894316 EM: Round [91] log likelihood: -6310441.886940 EM: Round [92] log likelihood: -6310441.879802 EM: Round [93] log likelihood: -6310441.872891 EM: Round [94] log likelihood: -6310441.866200 EM: Round [95] log likelihood: -6310441.859719 EM: Round [96] log likelihood: -6310441.853442 EM: Round [97] log likelihood: -6310441.847361 EM: Round [98] log likelihood: -6310441.841468 EM: Round [99] log likelihood: -6310441.835756 EM: Round [100] log likelihood: -6310441.830219 EM: Round [101] log likelihood: -6310441.824850 EM: Round [102] log likelihood: -6310441.819643 EM: Round [103] log likelihood: -6310441.814593 EM: Round [104] log likelihood: -6310441.809694 EM: Round [105] log likelihood: -6310441.804941 EM: Round [106] log likelihood: -6310441.800328 EM: Round [107] log likelihood: -6310441.795851 EM: Round [108] log likelihood: -6310441.791504 EM: Round [109] log likelihood: -6310441.787284 EM: Round [110] log likelihood: -6310441.783186 EM: Round [111] log likelihood: -6310441.779207 EM: Round [112] log likelihood: -6310441.775341 EM: Round [113] log likelihood: -6310441.771585 EM: Round [114] log likelihood: -6310441.767936 EM: Round [115] log likelihood: -6310441.764390 EM: Round [116] log likelihood: -6310441.760943 EM: Round [117] log likelihood: -6310441.757593 EM: Round [118] log likelihood: -6310441.754336 EM: Round [119] log likelihood: -6310441.751170 EM: Round [120] log likelihood: -6310441.748091 EM: Round [121] log likelihood: -6310441.745096 EM: Round [122] log likelihood: -6310441.742183 EM: Round [123] log likelihood: -6310441.739350 EM: Round [124] log likelihood: -6310441.736594 EM: Round [125] log likelihood: -6310441.733912 EM: Round [126] log likelihood: -6310441.731302 EM: Round [127] log likelihood: -6310441.728762 EM: Round [128] log likelihood: -6310441.726290 EM: Round [129] log likelihood: -6310441.723883 EM: Round [130] log likelihood: -6310441.721541 EM: Round [131] log likelihood: -6310441.719260 EM: Round [132] log likelihood: -6310441.717040 EM: Round [133] log likelihood: -6310441.714877 EM: Round [134] log likelihood: -6310441.712771 EM: Round [135] log likelihood: -6310441.710720 EM: Round [136] log likelihood: -6310441.708722 EM: Round [137] log likelihood: -6310441.706776 EM: Round [138] log likelihood: -6310441.704880 EM: Round [139] log likelihood: -6310441.703033 EM: Round [140] log likelihood: -6310441.701233 EM: Round [141] log likelihood: -6310441.699479 EM: Round [142] log likelihood: -6310441.697770 EM: Round [143] log likelihood: -6310441.696104 EM: Round [144] log likelihood: -6310441.694480 EM: Round [145] log likelihood: -6310441.692897 EM: Round [146] log likelihood: -6310441.691355 EM: Round [147] log likelihood: -6310441.689851 EM: Round [148] log likelihood: -6310441.688384 EM: Round [149] log likelihood: -6310441.686955 EM: Round [150] log likelihood: -6310441.685561 EM: Round [151] log likelihood: -6310441.684201 EM: Round [152] log likelihood: -6310441.682876 EM: Round [153] log likelihood: -6310441.681583 EM: Round [154] log likelihood: -6310441.680322 EM: Round [155] log likelihood: -6310441.679092 EM: Round [156] log likelihood: -6310441.677893 EM: Round [157] log likelihood: -6310441.676722 EM: Round [158] log likelihood: -6310441.675581 EM: Round [159] log likelihood: -6310441.674467 EM: Round [160] log likelihood: -6310441.673381 EM: Round [161] log likelihood: -6310441.672321 EM: Round [162] log likelihood: -6310441.671286 EM: Round [163] log likelihood: -6310441.670277 EM: Round [164] log likelihood: -6310441.669292 EM: Round [165] log likelihood: -6310441.668331 EM: Round [166] log likelihood: -6310441.667393 EM: Round [167] log likelihood: -6310441.666478 EM: Round [168] log likelihood: -6310441.665585 EM: Round [169] log likelihood: -6310441.664713 EM: Round [170] log likelihood: -6310441.663862 EM: Round [171] log likelihood: -6310441.663031 EM: Round [172] log likelihood: -6310441.662220 EM: Round [173] log likelihood: -6310441.661428 EM: Round [174] log likelihood: -6310441.660656 EM: Round [175] log likelihood: -6310441.659901 EM: Round [176] log likelihood: -6310441.659165 EM: Round [177] log likelihood: -6310441.658446 EM: Round [178] log likelihood: -6310441.657743 EM: Round [179] log likelihood: -6310441.657058 EM: Round [180] log likelihood: -6310441.656389 EM: Round [181] log likelihood: -6310441.655735 EM: Round [182] log likelihood: -6310441.655097 EM: Round [183] log likelihood: -6310441.654474 EM: Round [184] log likelihood: -6310441.653865 EM: Round [185] log likelihood: -6310441.653271 EM: Round [186] log likelihood: -6310441.652690 EM: Round [187] log likelihood: -6310441.652123 EM: Round [188] log likelihood: -6310441.651570 EM: Round [189] log likelihood: -6310441.651029 EM: Round [190] log likelihood: -6310441.650501 EM: Round [191] log likelihood: -6310441.649985 EM: Round [192] log likelihood: -6310441.649481 EM: Round [193] log likelihood: -6310441.648989 EM: Round [194] log likelihood: -6310441.648509 EM: Round [195] log likelihood: -6310441.648039 EM: Round [196] log likelihood: -6310441.647580 EM: Round [197] log likelihood: -6310441.647132 EM: Round [198] log likelihood: -6310441.646695 EM: Round [199] log likelihood: -6310441.646267 EM: Round [200] log likelihood: -6310441.645849 EM: Round [201] log likelihood: -6310441.645441 EM: Round [202] log likelihood: -6310441.645042 EM: Round [203] log likelihood: -6310441.644653 EM: Round [204] log likelihood: -6310441.644272 EM: Round [205] log likelihood: -6310441.643901 EM: Round [206] log likelihood: -6310441.643537 EM: Round [207] log likelihood: -6310441.643182 EM: Round [208] log likelihood: -6310441.642835 EM: Round [209] log likelihood: -6310441.642497 EM: Round [210] log likelihood: -6310441.642165 EM: Round [211] log likelihood: -6310441.641842 EM: Round [212] log likelihood: -6310441.641526 EM: Round [213] log likelihood: -6310441.641217 EM: Round [214] log likelihood: -6310441.640915 EM: Round [215] log likelihood: -6310441.640620 EM: Round [216] log likelihood: -6310441.640332 EM: Round [217] log likelihood: -6310441.640050 EM: Round [218] log likelihood: -6310441.639775 EM: Round [219] log likelihood: -6310441.639506 EM: Round [220] log likelihood: -6310441.639243 EM: Round [221] log likelihood: -6310441.638986 EM: Round [222] log likelihood: -6310441.638735 EM: Round [223] log likelihood: -6310441.638489 EM: Round [224] log likelihood: -6310441.638249 EM: Round [225] log likelihood: -6310441.638015 EM: Round [226] log likelihood: -6310441.637786 EM: Round [227] log likelihood: -6310441.637562 EM: Round [228] log likelihood: -6310441.637343 EM: Round [229] log likelihood: -6310441.637129 EM: Round [230] log likelihood: -6310441.636920 EM: Round [231] log likelihood: -6310441.636716 EM: Round [232] log likelihood: -6310441.636516 EM: Round [233] log likelihood: -6310441.636321 EM: Round [234] log likelihood: -6310441.636130 EM: Round [235] log likelihood: -6310441.635944 EM: Round [236] log likelihood: -6310441.635762 EM: Round [237] log likelihood: -6310441.635583 EM: Round [238] log likelihood: -6310441.635409 EM: Round [239] log likelihood: -6310441.635239 EM: Round [240] log likelihood: -6310441.635073 EM: Round [241] log likelihood: -6310441.634910 EM: Round [242] log likelihood: -6310441.634751 EM: Round [243] log likelihood: -6310441.634595 EM: Round [244] log likelihood: -6310441.634444 EM: Round [245] log likelihood: -6310441.634295 EM: Round [246] log likelihood: -6310441.634150 EM: Round [247] log likelihood: -6310441.634008 EM: Round [248] log likelihood: -6310441.633869 EM: Round [249] log likelihood: -6310441.633734 EM: Round [250] log likelihood: -6310441.633601 EM: Round [251] log likelihood: -6310441.633471 EM: Round [252] log likelihood: -6310441.633345 EM: Round [253] log likelihood: -6310441.633221 EM: Round [254] log likelihood: -6310441.633100 EM: Round [255] log likelihood: -6310441.632981 EM: Round [256] log likelihood: -6310441.632866 EM: Round [257] log likelihood: -6310441.632752 EM: Round [258] log likelihood: -6310441.632642 EM: Round [259] log likelihood: -6310441.632534 EM: Round [260] log likelihood: -6310441.632428 EM: Round [261] log likelihood: -6310441.632325 EM: Round [262] log likelihood: -6310441.632223 EM: Round [263] log likelihood: -6310441.632125 EM: Stopping iterations at round 263 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 294921407 > /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir > /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir --annotate /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir -done, see /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 343, filtered: 1855) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.RSQuzwCoEQ/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.RSQuzwCoEQ/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000224016.2] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000180747.15] WARNING, no entry stored in dbm for [ENSG00000278212.2] WARNING, no entry stored in dbm for [ENSG00000260727.2] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000278212.2] WARNING, no entry stored in dbm for [ENSG00000230116.1] WARNING, no entry stored in dbm for [ENSG00000243753.5] WARNING, no entry stored in dbm for [ENSG00000181126.13] WARNING, no entry stored in dbm for [ENSG00000267302.5] WARNING, no entry stored in dbm for [ENSG00000285835.1] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000198237.8] WARNING, no entry stored in dbm for [ENSG00000228463.10] WARNING, no entry stored in dbm for [ENSG00000276548.1] WARNING, no entry stored in dbm for [ENSG00000189149.12] WARNING, no entry stored in dbm for [ENSG00000267198.1] WARNING, no entry stored in dbm for [ENSG00000272134.1] WARNING, no entry stored in dbm for [ENSG00000230116.1] WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [ENSG00000280136.2] WARNING, no entry stored in dbm for [ENSG00000282508.2] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000271162.1] WARNING, no entry stored in dbm for [ENSG00000272140.2] WARNING, no entry stored in dbm for [ENSG00000287394.1] WARNING, no entry stored in dbm for [ENSG00000278212.2] WARNING, no entry stored in dbm for [ENSG00000228463.10] WARNING, no entry stored in dbm for [ENSG00000287411.1] WARNING, no entry stored in dbm for [ENSG00000106133.18] WARNING, no entry stored in dbm for [ENSG00000278212.2] WARNING, no entry stored in dbm for [ENSG00000278212.2] WARNING, no entry stored in dbm for [ENSG00000278212.2] WARNING, no entry stored in dbm for [ENSG00000239268.3] WARNING, no entry stored in dbm for [ENSG00000255050.1] WARNING, no entry stored in dbm for [ENSG00000257403.2] WARNING, no entry stored in dbm for [ENSG00000189149.12] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000185986.12] WARNING, no entry stored in dbm for [ENSG00000188002.10] WARNING, no entry stored in dbm for [ENSG00000246203.2] WARNING, no entry stored in dbm for [ENSG00000286699.1] WARNING, no entry stored in dbm for [ENSG00000230490.3] WARNING, no entry stored in dbm for [ENSG00000278212.2] WARNING, no entry stored in dbm for [ENSG00000266931.2] WARNING, no entry stored in dbm for [ENSG00000287352.1] WARNING, no entry stored in dbm for [ENSG00000185986.12] WARNING, no entry stored in dbm for [ENSG00000188002.10] WARNING, no entry stored in dbm for [ENSG00000215546.2] WARNING, no entry stored in dbm for [ENSG00000230202.1] WARNING, no entry stored in dbm for [ENSG00000241316.8] WARNING, no entry stored in dbm for [ENSG00000225661.7] WARNING, no entry stored in dbm for [ENSG00000139239.7] WARNING, no entry stored in dbm for [ENSG00000280780.2] WARNING, no entry stored in dbm for [ENSG00000186704.9] WARNING, no entry stored in dbm for [ENSG00000250999.2] WARNING, no entry stored in dbm for [ENSG00000284648.1] WARNING, no entry stored in dbm for [ENSG00000248618.1] WARNING, no entry stored in dbm for [ENSG00000282057.1] WARNING, no entry stored in dbm for [ENSG00000285035.1] WARNING, no entry stored in dbm for [ENSG00000285077.2] WARNING, no entry stored in dbm for [ENSG00000265936.1] WARNING, no entry stored in dbm for [ENSG00000214259.3] WARNING, no entry stored in dbm for [ENSG00000257403.2] WARNING, no entry stored in dbm for [ENSG00000189149.12] WARNING, no entry stored in dbm for [ENSG00000228303.1] WARNING, no entry stored in dbm for [ENSG00000250343.1] WARNING, no entry stored in dbm for [ENSG00000223508.5] WARNING, no entry stored in dbm for [ENSG00000259838.1] WARNING, no entry stored in dbm for [ENSG00000187953.10] WARNING, no entry stored in dbm for [ENSG00000214174.8] WARNING, no entry stored in dbm for [ENSG00000206028.1] WARNING, no entry stored in dbm for [ENSG00000286051.1] WARNING, no entry stored in dbm for [ENSG00000285677.2] WARNING, no entry stored in dbm for [ENSG00000257465.2] WARNING, no entry stored in dbm for [ENSG00000259838.1] WARNING, no entry stored in dbm for [ENSG00000279208.1] WARNING, no entry stored in dbm for [ENSG00000278931.1] WARNING, no entry stored in dbm for [ENSG00000204802.3] WARNING, no entry stored in dbm for [ENSG00000231212.1] WARNING, no entry stored in dbm for [ENSG00000237208.1] WARNING, no entry stored in dbm for [ENSG00000287394.1] WARNING, no entry stored in dbm for [ENSG00000287394.1] WARNING, no entry stored in dbm for [ENSG00000272180.1] WARNING, no entry stored in dbm for [ENSG00000267698.1] WARNING, no entry stored in dbm for [ENSG00000225594.1] WARNING, no entry stored in dbm for [ENSG00000228753.1] WARNING, no entry stored in dbm for [ENSG00000241313.3] WARNING, no entry stored in dbm for [ENSG00000215067.10] WARNING, no entry stored in dbm for [ENSG00000207523.1] WARNING, no entry stored in dbm for [ENSG00000256817.1] WARNING, no entry stored in dbm for [ENSG00000214108.4] WARNING, no entry stored in dbm for [ENSG00000250731.1] WARNING, no entry stored in dbm for [ENSG00000270304.1] WARNING, no entry stored in dbm for [ENSG00000232719.1] WARNING, no entry stored in dbm for [ENSG00000260892.1] WARNING, no entry stored in dbm for [ENSG00000250462.8] WARNING, no entry stored in dbm for [ENSG00000200091.1] WARNING, no entry stored in dbm for [ENSG00000214439.4] WARNING, no entry stored in dbm for [ENSG00000158482.10] WARNING, no entry stored in dbm for [ENSG00000276721.1] WARNING, no entry stored in dbm for [ENSG00000227568.1] WARNING, no entry stored in dbm for [ENSG00000176912.5] WARNING, no entry stored in dbm for [ENSG00000250645.1] WARNING, no entry stored in dbm for [ENSG00000258863.1] WARNING, no entry stored in dbm for [ENSG00000259781.1] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000236360.2] WARNING, no entry stored in dbm for [ENSG00000228349.1] WARNING, no entry stored in dbm for [ENSG00000243538.1] WARNING, no entry stored in dbm for [ENSG00000242571.1] WARNING, no entry stored in dbm for [ENSG00000232701.1] WARNING, no entry stored in dbm for [ENSG00000196204.12] WARNING, no entry stored in dbm for [ENSG00000199319.1] WARNING, no entry stored in dbm for [ENSG00000234323.8] WARNING, no entry stored in dbm for [ENSG00000203739.4] WARNING, no entry stored in dbm for [ENSG00000203739.4] WARNING, no entry stored in dbm for [ENSG00000287587.1] WARNING, no entry stored in dbm for [ENSG00000258550.1] WARNING, no entry stored in dbm for [ENSG00000250804.1] WARNING, no entry stored in dbm for [ENSG00000231427.6] WARNING, no entry stored in dbm for [ENSG00000250012.2] WARNING, no entry stored in dbm for [ENSG00000214174.8] WARNING, no entry stored in dbm for [ENSG00000263177.1] WARNING, no entry stored in dbm for [ENSG00000223440.1] WARNING, no entry stored in dbm for [ENSG00000284008.1] WARNING, no entry stored in dbm for [ENSG00000261441.1] WARNING, no entry stored in dbm for [ENSG00000199878.1] WARNING, no entry stored in dbm for [ENSG00000230445.4] WARNING, no entry stored in dbm for [ENSG00000232527.8] WARNING, no entry stored in dbm for [ENSG00000272779.1] WARNING, no entry stored in dbm for [ENSG00000251129.2] WARNING, no entry stored in dbm for [ENSG00000250754.6] WARNING, no entry stored in dbm for [ENSG00000206187.4] WARNING, no entry stored in dbm for [ENSG00000234323.8] WARNING, no entry stored in dbm for [ENSG00000224017.2] WARNING, no entry stored in dbm for [ENSG00000242073.2] WARNING, no entry stored in dbm for [ENSG00000250682.6] WARNING, no entry stored in dbm for [ENSG00000229214.2] WARNING, no entry stored in dbm for [ENSG00000230542.6] WARNING, no entry stored in dbm for [ENSG00000276758.1] WARNING, no entry stored in dbm for [ENSG00000213856.3] WARNING, no entry stored in dbm for [ENSG00000198857.3] WARNING, no entry stored in dbm for [ENSG00000265298.1] WARNING, no entry stored in dbm for [ENSG00000261620.1] WARNING, no entry stored in dbm for [ENSG00000214353.8] WARNING, no entry stored in dbm for [ENSG00000234429.1] WARNING, no entry stored in dbm for [ENSG00000248785.1] WARNING, no entry stored in dbm for [ENSG00000233299.1] WARNING, no entry stored in dbm for [ENSG00000235554.1] WARNING, no entry stored in dbm for [ENSG00000234429.1] WARNING, no entry stored in dbm for [ENSG00000226002.1] WARNING, no entry stored in dbm for [ENSG00000254840.1] WARNING, no entry stored in dbm for [ENSG00000261239.6] WARNING, no entry stored in dbm for [ENSG00000214433.4] WARNING, no entry stored in dbm for [ENSG00000250959.2] WARNING, no entry stored in dbm for [ENSG00000249302.2] WARNING, no entry stored in dbm for [ENSG00000234975.6] WARNING, no entry stored in dbm for [ENSG00000218213.1] WARNING, no entry stored in dbm for [ENSG00000231646.6] WARNING, no entry stored in dbm for [ENSG00000237877.7] WARNING, no entry stored in dbm for [ENSG00000231646.6] WARNING, no entry stored in dbm for [ENSG00000287129.1] WARNING, no entry stored in dbm for [ENSG00000149531.15] WARNING, no entry stored in dbm for [ENSG00000198468.9] WARNING, no entry stored in dbm for [ENSG00000214439.4] WARNING, no entry stored in dbm for [ENSG00000259087.5] WARNING, no entry stored in dbm for [ENSG00000184029.9] WARNING, no entry stored in dbm for [ENSG00000234840.2] WARNING, no entry stored in dbm for [ENSG00000222041.11] WARNING, no entry stored in dbm for [ENSG00000100058.12] WARNING, no entry stored in dbm for [ENSG00000257027.1] WARNING, no entry stored in dbm for [ENSG00000269243.1] WARNING, no entry stored in dbm for [ENSG00000227676.4] WARNING, no entry stored in dbm for [ENSG00000235677.1] WARNING, no entry stored in dbm for [ENSG00000286548.1] WARNING, no entry stored in dbm for [ENSG00000282851.2] WARNING, no entry stored in dbm for [ENSG00000235919.4] WARNING, no entry stored in dbm for [ENSG00000232300.1] WARNING, no entry stored in dbm for [ENSG00000254590.1] WARNING, no entry stored in dbm for [ENSG00000239883.8] WARNING, no entry stored in dbm for [ENSG00000254771.1] WARNING, no entry stored in dbm for [ENSG00000236235.1] WARNING, no entry stored in dbm for [ENSG00000261239.6] WARNING, no entry stored in dbm for [ENSG00000250826.2] WARNING, no entry stored in dbm for [ENSG00000215559.8] WARNING, no entry stored in dbm for [ENSG00000283938.1] WARNING, no entry stored in dbm for [ENSG00000201592.1] WARNING, no entry stored in dbm for [ENSG00000225099.1] WARNING, no entry stored in dbm for [ENSG00000232027.2] WARNING, no entry stored in dbm for [ENSG00000234937.1] WARNING, no entry stored in dbm for [ENSG00000273192.1] WARNING, no entry stored in dbm for [ENSG00000273333.2] WARNING, no entry stored in dbm for [ENSG00000271860.7] WARNING, no entry stored in dbm for [ENSG00000274420.1] WARNING, no entry stored in dbm for [ENSG00000283913.1] WARNING, no entry stored in dbm for [ENSG00000235749.3] WARNING, no entry stored in dbm for [ENSG00000234156.3] WARNING, no entry stored in dbm for [ENSG00000177788.6] WARNING, no entry stored in dbm for [ENSG00000285608.1] WARNING, no entry stored in dbm for [ENSG00000262833.1] WARNING, no entry stored in dbm for [ENSG00000226987.1] WARNING, no entry stored in dbm for [ENSG00000136149.6] WARNING, no entry stored in dbm for [ENSG00000227486.2] WARNING, no entry stored in dbm for [ENSG00000288543.1] WARNING, no entry stored in dbm for [ENSG00000288543.1] WARNING, no entry stored in dbm for [ENSG00000288543.1] WARNING, no entry stored in dbm for [ENSG00000260141.1] WARNING, no entry stored in dbm for [ENSG00000260644.6] WARNING, no entry stored in dbm for [ENSG00000215302.8] WARNING, no entry stored in dbm for [ENSG00000226235.1] WARNING, no entry stored in dbm for [ENSG00000268081.1] WARNING, no entry stored in dbm for [ENSG00000234292.3] WARNING, no entry stored in dbm for [ENSG00000280227.1] WARNING, no entry stored in dbm for [ENSG00000250159.7] WARNING, no entry stored in dbm for [ENSG00000261444.1] WARNING, no entry stored in dbm for [ENSG00000277003.1] WARNING, no entry stored in dbm for [ENSG00000252690.3] WARNING, no entry stored in dbm for [ENSG00000226054.2] WARNING, no entry stored in dbm for [ENSG00000282375.1] WARNING, no entry stored in dbm for [ENSG00000287431.1] WARNING, no entry stored in dbm for [ENSG00000287129.1] WARNING, no entry stored in dbm for [ENSG00000231646.6] WARNING, no entry stored in dbm for [ENSG00000284428.1] WARNING, no entry stored in dbm for [ENSG00000248126.1] WARNING, no entry stored in dbm for [ENSG00000230798.5] WARNING, no entry stored in dbm for [ENSG00000284707.2] WARNING, no entry stored in dbm for [ENSG00000284727.1] WARNING, no entry stored in dbm for [ENSG00000284707.2] WARNING, no entry stored in dbm for [ENSG00000284727.1] WARNING, no entry stored in dbm for [ENSG00000283303.1] WARNING, no entry stored in dbm for [ENSG00000231359.3] WARNING, no entry stored in dbm for [ENSG00000179131.7] WARNING, no entry stored in dbm for [ENSG00000240535.8] WARNING, no entry stored in dbm for [ENSG00000258053.1] WARNING, no entry stored in dbm for [ENSG00000177738.4] WARNING, no entry stored in dbm for [ENSG00000253336.1] WARNING, no entry stored in dbm for [ENSG00000283443.1] WARNING, no entry stored in dbm for [ENSG00000283443.1] WARNING, no entry stored in dbm for [ENSG00000272702.1] WARNING, no entry stored in dbm for [ENSG00000273297.2] WARNING, no entry stored in dbm for [ENSG00000284649.1] WARNING, no entry stored in dbm for [ENSG00000279583.1] WARNING, no entry stored in dbm for [ENSG00000230777.1] WARNING, no entry stored in dbm for [ENSG00000288554.1] WARNING, no entry stored in dbm for [ENSG00000257403.2] WARNING, no entry stored in dbm for [ENSG00000261273.1] WARNING, no entry stored in dbm for [ENSG00000259124.1] WARNING, no entry stored in dbm for [ENSG00000260086.3] WARNING, no entry stored in dbm for [ENSG00000224063.6] WARNING, no entry stored in dbm for [ENSG00000267231.1] WARNING, no entry stored in dbm for [ENSG00000226040.3] WARNING, no entry stored in dbm for [ENSG00000243554.1] WARNING, no entry stored in dbm for [ENSG00000258423.1] * STAR-Fusion complete. See output: /tmp/nxf.RSQuzwCoEQ/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)