Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a7/0b22fe6c769c8c652d5c195a60bafb/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/a0c174493c300af91e44d8174f1376/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0d/a0c174493c300af91e44d8174f1376/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/495df7c7d87251a4ec09c1d610db54/1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 270206933
[W::hts_idx_load3] The index file is older than the data file: 1173_CRL_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	270206933
Known Splicing Events:	266086388
Partial Novel Splicing Events:	1454109
Novel Splicing Events:	2602391
Filtered Splicing Events:	64045

Total splicing  Junctions:	531645
Known Splicing Junctions:	282273
Partial Novel Splicing Junctions:	168127
Novel Splicing Junctions:	81245

===================================================================
Create BED file ...
Create Interact file ...