File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/32/808bdad754efabbe9d85a0a9671b5b/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:15:01
                             Started mapping on |	Jun 08 10:21:29
                                    Finished on |	Jun 08 10:43:15
       Mapping speed, Million of reads per hour |	554.11

                          Number of input reads |	201017995
                      Average input read length |	200
                                    UNIQUE READS:
                   Uniquely mapped reads number |	190803703
                        Uniquely mapped reads % |	94.92%
                          Average mapped length |	199.77
                       Number of splices: Total |	135450953
            Number of splices: Annotated (sjdb) |	133233365
                       Number of splices: GT/AG |	133886772
                       Number of splices: GC/AG |	968920
                       Number of splices: AT/AC |	135251
               Number of splices: Non-canonical |	460010
                      Mismatch rate per base, % |	0.20%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.04
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.49
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7774251
             % of reads mapped to multiple loci |	3.87%
        Number of reads mapped to too many loci |	405158
             % of reads mapped to too many loci |	0.20%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1765402
                 % of reads unmapped: too short |	0.88%
                Number of reads unmapped: other |	269481
                     % of reads unmapped: other |	0.13%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%