Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/b3556f606c35de3db1b52ba8350abf/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/stage-fe242a7f-c5b9-4d3f-88fa-f3e739280d3a/45/503758169673f6b79761b4db9d3b84/dummy_file_fusioncatcher.txt
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/f9e6fc6c6a50ac5eb61b918cf96b26/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b2/fccd2faef1a76c861f70da5ccdb6e5/1173_F0Y_T1_RNA_SLD_01_A23T55JLT4_1.starfusion.starfusion.fusion_predictions.filtered_pass_only.tsv
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/f9e6fc6c6a50ac5eb61b918cf96b26/.command.run
Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/fusion_report_db
==> STAGING COMPLETE (6 inputs)
[32mRunning application...[0m
ITCH--PHF20
starfusion
PTMS--MTRNR2L12
starfusion
PAN3--POLR1D
starfusion
arriba
SCX--MROH1
starfusion
TLK2P1--AC110079.1
starfusion
PHF20--MYLK2
starfusion
MINK1--CLCN7
starfusion
INPP5A--AL596223.1
starfusion
LINC02802--AC245060.4
starfusion
FSIP1--AC013652.1
starfusion
PCDHGB2--PCDHGB6
arriba
PCDHGB2--PCDHGA10
arriba
PCDHGB2--PCDHGA8
arriba
PCDHGB2--PCDHGC4
arriba
PCDHGB2--PCDHGA11
arriba
PCDHGB2--PCDHGC5
arriba
PCDHGB2--PCDHGB7
arriba
PCDHGB2--PCDHGC3
arriba
PCDHGB2--PCDHGA9
arriba
PCDHGB2--PCDHGA12
arriba
TVP23C--CDRT4
arriba
CHD6--DHX35
arriba
CHD6--LINC01734
arriba
PCDHB14--PCDHB15
arriba
SEMA6A--RNU1-23P
arriba
SEMA6A--AL158090.1
arriba
ZNF419--ZNF772
arriba
0%| | 0/27 [00:00<?, ?it/s]
Processing ITCH--PHF20: 0%| | 0/27 [00:00<?, ?it/s]
Processing ITCH--PHF20: 4%|▎ | 1/27 [00:00<00:02, 9.26it/s]
Processing PTMS--MTRNR2L12: 4%|▎ | 1/27 [00:00<00:02, 9.26it/s]
Processing PTMS--MTRNR2L12: 7%|▋ | 2/27 [00:00<00:02, 9.48it/s]
Processing PAN3--POLR1D: 7%|▋ | 2/27 [00:00<00:02, 9.48it/s]
Processing PAN3--POLR1D: 11%|█ | 3/27 [00:00<00:02, 9.56it/s]
Processing SCX--MROH1: 11%|█ | 3/27 [00:00<00:02, 9.56it/s]
Processing SCX--MROH1: 15%|█▍ | 4/27 [00:00<00:02, 9.59it/s]
Processing TLK2P1--AC110079.1: 15%|█▍ | 4/27 [00:00<00:02, 9.59it/s]
Processing TLK2P1--AC110079.1: 19%|█▊ | 5/27 [00:00<00:02, 9.61it/s]
Processing PHF20--MYLK2: 19%|█▊ | 5/27 [00:00<00:02, 9.61it/s]
Processing PHF20--MYLK2: 22%|██▏ | 6/27 [00:00<00:02, 9.63it/s]
Processing MINK1--CLCN7: 22%|██▏ | 6/27 [00:00<00:02, 9.63it/s]
Processing MINK1--CLCN7: 26%|██▌ | 7/27 [00:00<00:02, 9.63it/s]
Processing INPP5A--AL596223.1: 26%|██▌ | 7/27 [00:00<00:02, 9.63it/s]
Processing INPP5A--AL596223.1: 30%|██▉ | 8/27 [00:00<00:01, 9.63it/s]
Processing LINC02802--AC245060.4: 30%|██▉ | 8/27 [00:00<00:01, 9.63it/s]
Processing LINC02802--AC245060.4: 33%|███▎ | 9/27 [00:00<00:01, 9.64it/s]
Processing FSIP1--AC013652.1: 33%|███▎ | 9/27 [00:00<00:01, 9.64it/s]
Processing FSIP1--AC013652.1: 37%|███▋ | 10/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 37%|███▋ | 10/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB6: 41%|████ | 11/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 41%|████ | 11/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA10: 44%|████▍ | 12/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 44%|████▍ | 12/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA8: 48%|████▊ | 13/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 48%|████▊ | 13/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC4: 52%|█████▏ | 14/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA11: 52%|█████▏ | 14/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGA11: 56%|█████▌ | 15/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC5: 56%|█████▌ | 15/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGC5: 59%|█████▉ | 16/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 59%|█████▉ | 16/27 [00:01<00:01, 9.64it/s]
Processing PCDHGB2--PCDHGB7: 63%|██████▎ | 17/27 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC3: 63%|██████▎ | 17/27 [00:01<00:01, 9.65it/s]
Processing PCDHGB2--PCDHGC3: 67%|██████▋ | 18/27 [00:01<00:00, 9.65it/s]
Processing PCDHGB2--PCDHGA9: 67%|██████▋ | 18/27 [00:01<00:00, 9.65it/s]
Processing PCDHGB2--PCDHGA9: 70%|███████ | 19/27 [00:01<00:00, 9.62it/s]
Processing PCDHGB2--PCDHGA12: 70%|███████ | 19/27 [00:01<00:00, 9.62it/s]
Processing PCDHGB2--PCDHGA12: 74%|███████▍ | 20/27 [00:02<00:00, 9.63it/s]
Processing TVP23C--CDRT4: 74%|███████▍ | 20/27 [00:02<00:00, 9.63it/s]
Processing TVP23C--CDRT4: 78%|███████▊ | 21/27 [00:02<00:00, 9.64it/s]
Processing CHD6--DHX35: 78%|███████▊ | 21/27 [00:02<00:00, 9.64it/s]
Processing CHD6--DHX35: 81%|████████▏ | 22/27 [00:02<00:00, 9.64it/s]
Processing CHD6--LINC01734: 81%|████████▏ | 22/27 [00:02<00:00, 9.64it/s]
Processing CHD6--LINC01734: 85%|████████▌ | 23/27 [00:02<00:00, 9.64it/s]
Processing PCDHB14--PCDHB15: 85%|████████▌ | 23/27 [00:02<00:00, 9.64it/s]
Processing PCDHB14--PCDHB15: 89%|████████▉ | 24/27 [00:02<00:00, 9.64it/s]
Processing SEMA6A--RNU1-23P: 89%|████████▉ | 24/27 [00:02<00:00, 9.64it/s]
Processing SEMA6A--RNU1-23P: 93%|█████████▎| 25/27 [00:02<00:00, 9.64it/s]
Processing SEMA6A--AL158090.1: 93%|█████████▎| 25/27 [00:02<00:00, 9.64it/s]
Processing SEMA6A--AL158090.1: 96%|█████████▋| 26/27 [00:02<00:00, 9.64it/s]
Processing ZNF419--ZNF772: 96%|█████████▋| 26/27 [00:02<00:00, 9.64it/s]
Processing ZNF419--ZNF772: 100%|██████████| 27/27 [00:02<00:00, 9.64it/s]
Processing ZNF419--ZNF772: 100%|██████████| 27/27 [00:02<00:00, 9.63it/s]
cat: fusion_report_db/DB-timestamp.txt: No such file or directory