-ctat genome lib [/tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.kKMyXq5Wox/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary -sample contains 206277902 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir -J /tmp/nxf.kKMyXq5Wox/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction -O /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.kKMyXq5Wox/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction -building interval tree based on /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=50000.00/min [20000], rate=54545.45/min [30000], rate=60000.00/min [40000], rate=63157.89/min [50000], rate=68181.82/min [60000], rate=72000.00/min [70000], rate=73684.21/min [80000], rate=76190.48/min [90000], rate=77142.86/min [100000], rate=78947.37/min [110000], rate=80487.80/min [120000], rate=81818.18/min [130000], rate=82978.72/min [140000], rate=84000.00/min [150000], rate=78947.37/min [160000], rate=74418.60/min [170000], rate=71328.67/min [180000], rate=69677.42/min [190000], rate=67857.14/min [200000], rate=66298.34/min [210000], rate=64615.38/min [220000], rate=62857.14/min [230000], rate=62162.16/min [240000], rate=61016.95/min [250000], rate=60483.87/min [260000], rate=59770.11/min [270000], rate=59340.66/min [280000], rate=58741.26/min [290000], rate=58000.00/min [300000], rate=57324.84/min [310000], rate=56707.32/min [320000], rate=56637.17/min [330000], rate=56571.43/min [340000], rate=56509.70/min [350000], rate=56300.27/min [360000], rate=55670.10/min [370000], rate=55086.85/min [380000], rate=54028.44/min [390000], rate=53917.05/min [400000], rate=53571.43/min [410000], rate=53246.75/min [420000], rate=52941.18/min [430000], rate=52760.74/min [440000], rate=52277.23/min [450000], rate=52224.37/min [460000], rate=52173.91/min [470000], rate=51933.70/min [480000], rate=51985.56/min [490000], rate=52035.40/min [500000], rate=52356.02/min [510000], rate=52667.81/min [520000], rate=53242.32/min [530000], rate=53807.11/min [540000], rate=54362.42/min [550000], rate=54726.37/min [560000], rate=55081.97/min [570000], rate=55609.76/min [580000], rate=56038.65/min [590000], rate=56459.33/min [600000], rate=56782.33/min [610000], rate=57187.50/min [620000], rate=57674.42/min [630000], rate=58064.52/min [640000], rate=58536.59/min [650000], rate=58823.53/min [660000], rate=59104.48/min [670000], rate=59732.54/min [680000], rate=60265.88/min [690000], rate=60792.95/min [700000], rate=61046.51/min [710000], rate=61294.96/min [720000], rate=61714.29/min [730000], rate=61951.91/min [740000], rate=62272.09/min [750000], rate=62586.93/min [760000], rate=62896.55/min [770000], rate=63287.67/min [780000], rate=63500.68/min [790000], rate=63709.68/min [800000], rate=64000.00/min [810000], rate=64370.86/min [820000], rate=64651.77/min [830000], rate=64843.75/min [840000], rate=65032.26/min [850000], rate=65217.39/min [860000], rate=65482.23/min [870000], rate=65743.07/min [880000], rate=66000.00/min [890000], rate=66253.10/min [900000], rate=66420.66/min [910000], rate=66585.37/min [920000], rate=66909.09/min [930000], rate=67228.92/min [940000], rate=67707.08/min [950000], rate=68019.09/min [960000], rate=68327.40/min [970000], rate=68551.24/min [980000], rate=68691.59/min [990000], rate=68750.00/min [1000000], rate=68965.52/min [1010000], rate=69178.08/min [1020000], rate=69466.52/min [1030000], rate=69594.59/min [1040000], rate=69565.22/min [1050000], rate=69690.27/min [1060000], rate=69813.39/min [1070000], rate=70163.93/min [1080000], rate=70129.87/min [1090000], rate=70322.58/min [1100000], rate=69989.40/min [1110000], rate=70031.55/min [1120000], rate=70292.89/min [1130000], rate=69969.04/min [1140000], rate=69795.92/min [1150000], rate=69416.50/min [1160000], rate=69530.47/min [1170000], rate=69504.95/min [1180000], rate=69548.13/min [1190000], rate=69658.54/min [1200000], rate=69498.07/min [1210000], rate=69473.68/min [1220000], rate=69647.95/min [1230000], rate=69886.36/min [1240000], rate=69990.59/min [1250000], rate=70028.01/min [1260000], rate=70129.87/min [1270000], rate=70295.20/min [1280000], rate=70458.72/min [1290000], rate=70620.44/min [1300000], rate=70524.41/min [1310000], rate=70556.55/min [1320000], rate=70651.20/min [1330000], rate=70870.34/min [1340000], rate=71150.44/min [1350000], rate=71365.64/min [1360000], rate=70466.32/min [1370000], rate=69957.45/min [1380000], rate=69230.77/min [1390000], rate=69269.10/min [1400000], rate=69249.79/min [1410000], rate=69174.16/min [1420000], rate=69268.29/min [1430000], rate=69082.13/min [1440000], rate=69230.77/min [1450000], rate=69377.99/min [1460000], rate=68976.38/min [1470000], rate=67898.38/min [1480000], rate=67069.49/min [1490000], rate=66320.47/min [1500000], rate=66176.47/min [1510000], rate=66083.15/min [1520000], rate=66086.96/min [1530000], rate=66138.33/min [1540000], rate=66094.42/min [1550000], rate=66192.17/min [1560000], rate=66288.95/min [1570000], rate=66338.03/min [1580000], rate=66433.08/min [1590000], rate=66620.11/min [1600000], rate=66759.39/min [1610000], rate=66804.98/min [1620000], rate=66896.08/min [1630000], rate=66986.30/min [1640000], rate=67075.66/min [1650000], rate=66801.62/min [1660000], rate=66488.65/min [1670000], rate=66007.91/min [1680000], rate=65796.34/min [1690000], rate=65503.88/min [1700000], rate=65259.12/min [1710000], rate=65060.24/min [1720000], rate=64824.12/min [1730000], rate=64472.05/min [1740000], rate=64167.18/min [1750000], rate=63063.06/min [1760000], rate=62227.46/min [1770000], rate=61458.33/min [1780000], rate=61063.46/min [1790000], rate=60988.07/min [1800000], rate=60982.50/min [1810000], rate=60942.76/min [1820000], rate=60971.52/min [1830000], rate=60966.13/min [1840000], rate=60994.48/min [1850000], rate=61056.11/min [1860000], rate=61083.74/min [1870000], rate=61144.41/min [1880000], rate=61204.56/min [1890000], rate=61297.30/min [1900000], rate=61422.41/min [1910000], rate=61579.80/min [1920000], rate=61703.27/min [1930000], rate=61892.04/min [1940000], rate=62013.85/min [1950000], rate=62167.91/min [1960000], rate=62354.19/min [1970000], rate=62473.57/min [1980000], rate=62658.23/min [1990000], rate=62809.05/min [2000000], rate=62926.06/min [2010000], rate=63075.31/min [2020000], rate=63190.82/min [2030000], rate=63371.49/min [2040000], rate=63518.42/min [2050000], rate=63631.66/min [2060000], rate=63842.98/min [2070000], rate=63954.69/min [2080000], rate=64065.71/min [2090000], rate=64143.22/min [2100000], rate=64220.18/min [2110000], rate=64296.60/min [2120000], rate=64372.47/min [2130000], rate=64415.32/min [2140000], rate=64490.21/min [2150000], rate=64435.56/min [2160000], rate=64222.00/min [2170000], rate=64074.80/min [2180000], rate=63898.39/min [2190000], rate=63724.54/min [2200000], rate=63553.20/min [2210000], rate=63414.63/min [2220000], rate=63277.91/min [2230000], rate=63202.65/min [2240000], rate=63098.59/min [2250000], rate=62995.80/min [2260000], rate=62923.43/min [2270000], rate=62880.89/min [2280000], rate=62867.65/min [2290000], rate=62797.07/min [2300000], rate=62784.35/min [2310000], rate=62743.32/min [2320000], rate=62759.24/min [2330000], rate=62746.86/min [2340000], rate=62734.58/min [2350000], rate=62750.33/min [2360000], rate=62793.79/min [2370000], rate=62836.94/min [2380000], rate=62962.96/min [2390000], rate=63088.43/min [2400000], rate=63130.21/min [2410000], rate=63226.93/min [2420000], rate=63267.97/min [2430000], rate=63336.23/min [2440000], rate=63376.62/min [2450000], rate=63444.11/min [2460000], rate=63511.19/min [2470000], rate=63550.60/min [2480000], rate=63616.93/min [2490000], rate=63655.73/min [2500000], rate=63451.78/min [2510000], rate=63144.65/min [2520000], rate=62712.57/min [2530000], rate=62572.14/min [2540000], rate=62433.43/min [2550000], rate=62094.16/min [2560000], rate=61860.65/min [2570000], rate=61778.85/min [2580000], rate=61697.89/min [2590000], rate=61642.21/min [2600000], rate=61611.37/min [2610000], rate=61580.81/min [2620000], rate=61550.51/min [2630000], rate=61472.54/min [2640000], rate=61016.95/min [2650000], rate=60826.32/min [2660000], rate=60800.00/min [2670000], rate=60820.05/min [2680000], rate=60770.98/min [2690000], rate=60449.44/min [2700000], rate=60200.67/min [2710000], rate=60155.38/min [2720000], rate=60221.40/min [2730000], rate=60287.08/min [2740000], rate=60352.42/min [2750000], rate=60417.43/min [2760000], rate=60460.02/min [2770000], rate=60524.40/min [2780000], rate=60566.45/min -building interval tree based on /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=42857.14/min [20000], rate=44444.44/min [30000], rate=45000.00/min [40000], rate=44444.44/min [50000], rate=44776.12/min [60000], rate=45000.00/min [70000], rate=45161.29/min [80000], rate=45283.02/min [90000], rate=45378.15/min [100000], rate=45801.53/min [110000], rate=46808.51/min [120000], rate=46753.25/min [130000], rate=46706.59/min [140000], rate=46927.37/min [150000], rate=47368.42/min [160000], rate=47761.19/min [170000], rate=48113.21/min [180000], rate=48430.49/min [190000], rate=48717.95/min [200000], rate=48979.59/min [210000], rate=49218.75/min [220000], rate=49438.20/min [230000], rate=49819.49/min [240000], rate=50174.22/min [250000], rate=50505.05/min [260000], rate=50649.35/min [270000], rate=50783.70/min [280000], rate=51063.83/min [290000], rate=51632.05/min [300000], rate=52023.12/min [310000], rate=52691.22/min [320000], rate=53333.33/min [330000], rate=53804.35/min [340000], rate=54255.32/min [350000], rate=54687.50/min [360000], rate=55102.04/min [370000], rate=55361.60/min [380000], rate=55745.72/min [390000], rate=56250.00/min [400000], rate=56737.59/min [410000], rate=57076.57/min [420000], rate=57403.19/min [430000], rate=57847.53/min [440000], rate=57768.05/min [450000], rate=57446.81/min [460000], rate=57261.41/min [470000], rate=57085.02/min [480000], rate=57029.70/min [490000], rate=56976.74/min [500000], rate=56926.00/min [510000], rate=56877.32/min [520000], rate=56830.60/min [530000], rate=56887.30/min [540000], rate=56942.00/min [550000], rate=56994.82/min [560000], rate=57045.84/min [570000], rate=57190.64/min [580000], rate=57425.74/min [590000], rate=57560.98/min [600000], rate=57784.91/min [610000], rate=58003.17/min [620000], rate=58125.00/min [630000], rate=58423.49/min [640000], rate=58536.59/min [650000], rate=58734.94/min [660000], rate=58928.57/min [670000], rate=59204.71/min [680000], rate=59388.65/min [690000], rate=59654.18/min [700000], rate=59914.41/min [710000], rate=60254.60/min [720000], rate=60504.20/min [730000], rate=60748.96/min [740000], rate=61072.90/min [750000], rate=61141.30/min [760000], rate=60719.04/min [770000], rate=60789.47/min [780000], rate=61096.61/min [790000], rate=61718.75/min [800000], rate=61855.67/min [810000], rate=62307.69/min [820000], rate=62595.42/min [830000], rate=62720.40/min [840000], rate=62921.35/min [850000], rate=63197.03/min [860000], rate=63312.88/min [870000], rate=63426.49/min [880000], rate=63461.54/min [890000], rate=63345.20/min [900000], rate=63380.28/min [910000], rate=63414.63/min [920000], rate=63815.03/min [930000], rate=64064.29/min [940000], rate=64310.15/min [950000], rate=64552.66/min [960000], rate=64719.10/min [970000], rate=64523.28/min [980000], rate=64473.68/min [990000], rate=64425.16/min [1000000], rate=64935.06/min [1010000], rate=65301.72/min [1020000], rate=65454.55/min [1030000], rate=65674.81/min [1040000], rate=65892.29/min [1050000], rate=65968.59/min [1060000], rate=66181.06/min [1070000], rate=66049.38/min [1080000], rate=65987.78/min [1090000], rate=66463.41/min [1100000], rate=66398.39/min [1110000], rate=66137.04/min [1120000], rate=65753.42/min [1130000], rate=65761.40/min [1140000], rate=65769.23/min [1150000], rate=66091.95/min [1160000], rate=66222.65/min [1170000], rate=66288.95/min [1180000], rate=66416.51/min [1190000], rate=66666.67/min [1200000], rate=67226.89/min [1210000], rate=67723.88/min [1220000], rate=67590.03/min [1230000], rate=67090.91/min [1240000], rate=67208.67/min [1250000], rate=67324.96/min [1260000], rate=67319.68/min [1270000], rate=67374.01/min [1280000], rate=67309.38/min [1290000], rate=66666.67/min [1300000], rate=66382.98/min [1310000], rate=65829.15/min [1320000], rate=65945.05/min [1330000], rate=65950.41/min [1340000], rate=65847.67/min [1350000], rate=66068.52/min [1360000], rate=65753.42/min [1370000], rate=65393.79/min [1380000], rate=64941.18/min [1390000], rate=64351.85/min [1400000], rate=64318.53/min [1410000], rate=64383.56/min [1420000], rate=64447.81/min [1430000], rate=64317.84/min [1440000], rate=64237.92/min [1450000], rate=64254.06/min [1460000], rate=64364.44/min [1470000], rate=64426.59/min [1480000], rate=64441.22/min [1490000], rate=64548.74/min [1500000], rate=64608.76/min [1510000], rate=64714.29/min [1520000], rate=64818.76/min [1530000], rate=64876.33/min [1540000], rate=64978.90/min [1550000], rate=65080.48/min [1560000], rate=65135.70/min [1570000], rate=65235.46/min [1580000], rate=65334.25/min [1590000], rate=65432.10/min [1600000], rate=65306.12/min [1610000], rate=64658.63/min [1620000], rate=64073.83/min [1630000], rate=63506.49/min [1640000], rate=63076.92/min [1650000], rate=61759.20/min [1660000], rate=61066.83/min [1670000], rate=60874.85/min [1680000], rate=60540.54/min [1690000], rate=60285.37/min [1700000], rate=60000.00/min [1710000], rate=59685.86/min [1720000], rate=59412.78/min [1730000], rate=59179.02/min [1740000], rate=58816.90/min [1750000], rate=58626.47/min [1760000], rate=58504.16/min [1770000], rate=58319.60/min [1780000], rate=58138.27/min [1790000], rate=58022.69/min [1800000], rate=57939.91/min [1810000], rate=57858.28/min [1820000], rate=57534.25/min [1830000], rate=56861.73/min [1840000], rate=56240.45/min [1850000], rate=55750.88/min [1860000], rate=55744.26/min [1870000], rate=55765.41/min [1880000], rate=55758.77/min [1890000], rate=55807.09/min [1900000], rate=55827.62/min [1910000], rate=55658.09/min [1920000], rate=55331.41/min [1930000], rate=55038.02/min [1940000], rate=54828.07/min [1950000], rate=54621.85/min [1960000], rate=54444.44/min [1970000], rate=54170.49/min [1980000], rate=54296.16/min [1990000], rate=54322.11/min [2000000], rate=54225.03/min [2010000], rate=54104.98/min [2020000], rate=54010.70/min [2030000], rate=53917.66/min [2040000], rate=53825.86/min [2050000], rate=53735.26/min [2060000], rate=53669.13/min [2070000], rate=53603.80/min [2080000], rate=53562.23/min [2090000], rate=53543.98/min [2100000], rate=53525.91/min [2110000], rate=53530.66/min [2120000], rate=53512.83/min [2130000], rate=53540.01/min [2140000], rate=53500.00/min [2150000], rate=53526.97/min [2160000], rate=53399.26/min [2170000], rate=53448.28/min [2180000], rate=53518.82/min [2190000], rate=53588.91/min [2200000], rate=53658.54/min [2210000], rate=53705.95/min [2220000], rate=53796.45/min [2230000], rate=53627.25/min [2240000], rate=53439.36/min [2250000], rate=53275.45/min [2260000], rate=53134.80/min [2270000], rate=52975.50/min [2280000], rate=52353.62/min [2290000], rate=51829.50/min [2300000], rate=51301.12/min [2310000], rate=50787.83/min [2320000], rate=50361.79/min [2330000], rate=49928.57/min [2340000], rate=49716.71/min [2350000], rate=49717.91/min [2360000], rate=49736.56/min [2370000], rate=49755.07/min [2380000], rate=49808.16/min [2390000], rate=49843.59/min [2400000], rate=49878.77/min [2410000], rate=49913.70/min [2420000], rate=49982.79/min [2430000], rate=50034.32/min [2440000], rate=50085.53/min [2450000], rate=50153.53/min [2460000], rate=50238.26/min [2470000], rate=50288.43/min [2480000], rate=50355.33/min [2490000], rate=50404.86/min [2500000], rate=50471.06/min [2510000], rate=50553.88/min [2520000], rate=50619.35/min [2530000], rate=50701.40/min [2540000], rate=50783.07/min [2550000], rate=50881.28/min [2560000], rate=50793.65/min [2570000], rate=50673.68/min [2580000], rate=50423.45/min [2590000], rate=50323.83/min [2600000], rate=50257.73/min [2610000], rate=50176.23/min [2620000], rate=50111.57/min [2630000], rate=50079.34/min [2640000], rate=49780.01/min [2650000], rate=49532.71/min [2660000], rate=49503.72/min [2670000], rate=49398.70/min [2680000], rate=49355.43/min [2690000], rate=49297.50/min [2700000], rate=49255.09/min [2710000], rate=49183.30/min [2720000], rate=49141.82/min [2730000], rate=49100.72/min [2740000], rate=49059.98/min [2750000], rate=49005.05/min [2760000], rate=48965.11/min [2770000], rate=48954.34/min [2780000], rate=48943.66/min -building interval tree based on /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=54545.45/min [20000], rate=54545.45/min [30000], rate=52941.18/min [40000], rate=54545.45/min [50000], rate=56603.77/min [60000], rate=58064.52/min [70000], rate=60000.00/min [80000], rate=61538.46/min [90000], rate=62068.97/min [100000], rate=63829.79/min [110000], rate=65346.53/min [120000], rate=67289.72/min [130000], rate=68421.05/min [140000], rate=69421.49/min [150000], rate=70866.14/min [160000], rate=72180.45/min [170000], rate=73913.04/min [180000], rate=77697.84/min [190000], rate=81428.57/min [200000], rate=83333.33/min [210000], rate=85135.14/min [220000], rate=87417.22/min [230000], rate=89610.39/min [240000], rate=91719.75/min [250000], rate=92024.54/min [260000], rate=92857.14/min [270000], rate=96428.57/min [280000], rate=99408.28/min [290000], rate=100578.03/min [300000], rate=102857.14/min [310000], rate=103333.33/min [320000], rate=100523.56/min [330000], rate=97536.95/min [340000], rate=94883.72/min [350000], rate=92920.35/min [360000], rate=91139.24/min [370000], rate=89156.63/min [380000], rate=87356.32/min [390000], rate=86029.41/min [400000], rate=84805.65/min [410000], rate=83673.47/min [420000], rate=82622.95/min [430000], rate=81645.57/min [440000], rate=81230.77/min [450000], rate=80838.32/min [460000], rate=80701.75/min [470000], rate=80802.29/min [480000], rate=80672.27/min [490000], rate=80327.87/min [500000], rate=80862.53/min [510000], rate=81600.00/min [520000], rate=82321.90/min [530000], rate=81748.07/min [540000], rate=81612.09/min [550000], rate=81481.48/min [560000], rate=79809.98/min [570000], rate=76853.93/min [580000], rate=73885.35/min [590000], rate=71227.36/min [600000], rate=68702.29/min [610000], rate=66910.42/min [620000], rate=66666.67/min [630000], rate=64837.05/min [640000], rate=63576.16/min [650000], rate=62200.96/min [660000], rate=61016.95/min [670000], rate=59732.54/min [680000], rate=58959.54/min [690000], rate=58640.23/min [700000], rate=58252.43/min [710000], rate=57645.47/min [720000], rate=57218.54/min [730000], rate=56883.12/min [740000], rate=56345.18/min [750000], rate=55762.08/min [760000], rate=55272.73/min [770000], rate=55000.00/min [780000], rate=54800.94/min [790000], rate=54608.29/min [800000], rate=54298.64/min [810000], rate=53940.07/min [820000], rate=53711.79/min [830000], rate=53606.03/min [840000], rate=53389.83/min [850000], rate=53403.14/min [860000], rate=53195.88/min [870000], rate=53211.01/min [880000], rate=52852.85/min [890000], rate=52610.84/min [900000], rate=52478.13/min [910000], rate=51267.61/min [920000], rate=50045.33/min [930000], rate=49336.87/min [940000], rate=49300.70/min [950000], rate=49350.65/min [960000], rate=49272.88/min [970000], rate=49196.96/min [980000], rate=48877.81/min [990000], rate=48489.80/min [1000000], rate=48661.80/min [1010000], rate=48674.70/min [1020000], rate=48687.35/min [1030000], rate=48738.17/min [1040000], rate=48750.00/min [1050000], rate=48761.61/min [1060000], rate=48810.44/min [1070000], rate=48821.29/min [1080000], rate=48905.66/min [1090000], rate=48952.10/min [1100000], rate=48708.49/min [1110000], rate=48755.49/min [1120000], rate=48872.73/min [1130000], rate=48953.07/min [1140000], rate=48510.64/min [1150000], rate=48016.70/min [1160000], rate=47606.02/min [1170000], rate=47272.73/min [1180000], rate=47074.47/min [1190000], rate=47159.84/min [1200000], rate=46905.54/min [1210000], rate=47081.71/min [1220000], rate=47225.81/min [1230000], rate=47066.33/min [1240000], rate=46470.96/min [1250000], rate=45787.55/min [1260000], rate=45323.74/min [1270000], rate=44876.33/min [1280000], rate=44547.56/min [1290000], rate=44102.56/min [1300000], rate=43141.59/min [1310000], rate=42122.19/min [1320000], rate=41228.53/min [1330000], rate=40405.06/min [1340000], rate=39605.91/min [1350000], rate=38886.22/min [1360000], rate=38327.85/min [1370000], rate=37862.74/min [1380000], rate=37483.02/min [1390000], rate=37483.15/min [1400000], rate=37483.27/min [1410000], rate=37466.78/min [1420000], rate=37467.02/min [1430000], rate=37467.25/min [1440000], rate=37483.73/min [1450000], rate=37483.84/min [1460000], rate=37516.06/min [1470000], rate=37547.89/min [1480000], rate=37595.26/min [1490000], rate=37657.96/min [1500000], rate=37720.03/min [1510000], rate=37718.57/min [1520000], rate=37779.62/min [1530000], rate=37824.47/min [1540000], rate=37868.85/min [1550000], rate=37928.22/min [1560000], rate=38033.32/min [1570000], rate=38106.80/min [1580000], rate=38179.62/min [1590000], rate=38282.50/min [1600000], rate=38323.35/min [1610000], rate=38166.73/min [1620000], rate=38222.57/min [1630000], rate=38277.89/min [1640000], rate=38332.68/min [1650000], rate=38372.09/min [1660000], rate=38440.76/min [1670000], rate=38479.26/min [1680000], rate=38532.11/min [1690000], rate=38569.80/min [1700000], rate=38636.36/min [1710000], rate=38687.78/min [1720000], rate=38753.29/min [1730000], rate=38659.22/min [1740000], rate=38241.76/min [1750000], rate=38015.93/min [1760000], rate=37985.61/min [1770000], rate=38037.25/min [1780000], rate=38074.87/min [1790000], rate=38125.67/min [1800000], rate=38189.53/min [1810000], rate=38266.38/min [1820000], rate=38329.24/min [1830000], rate=38391.61/min [1840000], rate=38373.31/min [1850000], rate=38183.69/min [1860000], rate=38023.85/min [1870000], rate=37918.22/min [1880000], rate=37992.59/min [1890000], rate=38092.04/min [1900000], rate=38178.16/min [1910000], rate=38276.55/min [1920000], rate=38374.42/min [1930000], rate=38484.55/min [1940000], rate=38568.59/min [1950000], rate=38664.90/min [1960000], rate=38760.71/min [1970000], rate=38856.02/min [1980000], rate=38963.59/min [1990000], rate=39070.68/min [2000000], rate=39164.49/min [2010000], rate=39245.04/min [2020000], rate=39312.36/min [2030000], rate=39455.78/min [2040000], rate=39534.88/min [2050000], rate=39600.77/min [2060000], rate=39678.97/min [2070000], rate=39769.45/min [2080000], rate=39859.47/min [2090000], rate=39696.11/min [2100000], rate=39486.05/min [2110000], rate=39207.18/min [2120000], rate=39030.38/min [2130000], rate=38868.61/min [2140000], rate=38686.35/min [2150000], rate=38518.96/min [2160000], rate=38354.54/min [2170000], rate=38215.44/min [2180000], rate=38067.52/min [2190000], rate=37933.03/min [2200000], rate=37789.87/min [2210000], rate=37659.76/min [2220000], rate=37552.86/min [2230000], rate=37426.57/min [2240000], rate=37374.86/min [2250000], rate=37282.52/min [2260000], rate=37211.86/min [2270000], rate=37142.08/min [2280000], rate=37083.22/min [2290000], rate=37045.03/min [2300000], rate=37017.17/min [2310000], rate=36989.59/min [2320000], rate=36962.29/min [2330000], rate=36935.27/min [2340000], rate=36918.22/min [2350000], rate=36901.33/min [2360000], rate=36884.61/min [2370000], rate=36896.73/min [2380000], rate=36908.76/min [2390000], rate=36939.72/min [2400000], rate=36960.99/min [2410000], rate=36991.56/min [2420000], rate=37012.49/min [2430000], rate=37061.51/min [2440000], rate=37091.46/min [2450000], rate=37130.59/min [2460000], rate=37169.48/min [2470000], rate=37217.48/min [2480000], rate=37274.55/min [2490000], rate=37331.33/min [2500000], rate=37378.52/min [2510000], rate=37434.75/min [2520000], rate=37490.70/min [2530000], rate=37555.67/min [2540000], rate=37601.78/min [2550000], rate=37666.17/min [2560000], rate=37721.02/min [2570000], rate=37775.60/min [2580000], rate=37839.16/min [2590000], rate=37902.44/min [2600000], rate=37965.44/min [2610000], rate=38046.65/min [2620000], rate=38109.09/min [2630000], rate=38180.50/min [2640000], rate=38251.63/min [2650000], rate=38322.49/min [2660000], rate=38402.31/min [2670000], rate=38481.86/min [2680000], rate=38561.15/min [2690000], rate=38640.17/min [2700000], rate=38654.26/min [2710000], rate=38613.16/min [2720000], rate=38581.56/min [2730000], rate=38559.32/min [2740000], rate=38537.27/min [2750000], rate=38524.40/min [2760000], rate=38511.63/min [2770000], rate=38490.04/min -building interval tree based on /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.08 min). -mapping reads to genes [10000], rate=75000.00/min [20000], rate=75000.00/min [30000], rate=75000.00/min [40000], rate=75000.00/min [50000], rate=81081.08/min [60000], rate=83720.93/min [70000], rate=85714.29/min [80000], rate=87272.73/min [90000], rate=94736.84/min [100000], rate=105263.16/min [110000], rate=115789.47/min [120000], rate=124137.93/min [130000], rate=123809.52/min [140000], rate=125373.13/min [150000], rate=126760.56/min [160000], rate=126315.79/min [170000], rate=129113.92/min [180000], rate=133333.33/min [190000], rate=129545.45/min [200000], rate=127659.57/min [210000], rate=124752.48/min [220000], rate=122222.22/min [230000], rate=124324.32/min [240000], rate=125217.39/min [250000], rate=123966.94/min [260000], rate=122834.65/min [270000], rate=124615.38/min [280000], rate=129230.77/min [290000], rate=133846.15/min [300000], rate=137404.58/min [310000], rate=136764.71/min [320000], rate=137142.86/min [330000], rate=136551.72/min [340000], rate=136000.00/min [350000], rate=137254.90/min [360000], rate=139354.84/min [370000], rate=137037.04/min [380000], rate=135714.29/min [390000], rate=133714.29/min [400000], rate=132596.69/min [410000], rate=130851.06/min [420000], rate=131250.00/min [430000], rate=131632.65/min [440000], rate=131343.28/min [450000], rate=131707.32/min [460000], rate=130805.69/min [470000], rate=133649.29/min [480000], rate=136492.89/min [490000], rate=139336.49/min [500000], rate=139534.88/min [510000], rate=139090.91/min [520000], rate=139285.71/min [530000], rate=138864.63/min [540000], rate=138461.54/min [550000], rate=136929.46/min [560000], rate=135483.87/min [570000], rate=134645.67/min [580000], rate=133333.33/min [590000], rate=132089.55/min [600000], rate=132841.33/min [610000], rate=133090.91/min [620000], rate=132384.34/min [630000], rate=132167.83/min [640000], rate=132413.79/min [650000], rate=134020.62/min [660000], rate=136082.47/min [670000], rate=138144.33/min [680000], rate=137373.74/min [690000], rate=136633.66/min [700000], rate=136363.64/min [710000], rate=135668.79/min [720000], rate=135000.00/min [730000], rate=128445.75/min [740000], rate=118085.11/min [750000], rate=102974.83/min [760000], rate=92121.21/min [770000], rate=84306.57/min [780000], rate=77611.94/min [790000], rate=72699.39/min [800000], rate=68278.81/min [810000], rate=64370.86/min [820000], rate=61654.14/min [830000], rate=59498.21/min [840000], rate=57078.14/min [850000], rate=54603.85/min [860000], rate=52439.02/min [870000], rate=49619.77/min [880000], rate=48043.68/min [890000], rate=45994.83/min [900000], rate=44628.10/min [910000], rate=43471.34/min [920000], rate=42658.42/min [930000], rate=40700.22/min [940000], rate=39858.66/min [950000], rate=38617.89/min [960000], rate=37696.34/min [970000], rate=37117.35/min [980000], rate=36318.72/min [990000], rate=35783.13/min [1000000], rate=35128.81/min [1010000], rate=34747.71/min [1020000], rate=34478.87/min [1030000], rate=34295.23/min [1040000], rate=34154.35/min [1050000], rate=34017.28/min [1060000], rate=33883.86/min [1070000], rate=33161.16/min [1080000], rate=32448.67/min [1090000], rate=31732.17/min [1100000], rate=31639.50/min [1110000], rate=31638.95/min [1120000], rate=31212.26/min [1130000], rate=30874.32/min [1140000], rate=30576.67/min [1150000], rate=30223.39/min [1160000], rate=29896.91/min [1170000], rate=29557.89/min [1180000], rate=29524.60/min [1190000], rate=29516.33/min [1200000], rate=29185.25/min [1210000], rate=29121.54/min [1220000], rate=29140.13/min [1230000], rate=29169.96/min [1240000], rate=29199.37/min [1250000], rate=29216.98/min [1260000], rate=29256.97/min [1270000], rate=29307.69/min [1280000], rate=29357.80/min [1290000], rate=29440.85/min [1300000], rate=29511.92/min [1310000], rate=29593.37/min [1320000], rate=29685.16/min [1330000], rate=29776.12/min [1340000], rate=29877.37/min [1350000], rate=29966.70/min [1360000], rate=30077.41/min [1370000], rate=30187.29/min [1380000], rate=30296.38/min [1390000], rate=30404.67/min [1400000], rate=30467.90/min [1410000], rate=30398.85/min [1420000], rate=30341.88/min [1430000], rate=30285.92/min [1440000], rate=30294.53/min [1450000], rate=30334.73/min [1460000], rate=30353.43/min [1470000], rate=30392.83/min [1480000], rate=30442.24/min [1490000], rate=30501.54/min [1500000], rate=30560.27/min [1510000], rate=30628.80/min [1520000], rate=30707.07/min [1530000], rate=30795.04/min [1540000], rate=30872.03/min [1550000], rate=30815.11/min [1560000], rate=30789.47/min [1570000], rate=30875.12/min [1580000], rate=30970.27/min [1590000], rate=31054.69/min [1600000], rate=31148.60/min [1610000], rate=31252.02/min [1620000], rate=31354.84/min [1630000], rate=31457.06/min [1640000], rate=31558.69/min [1650000], rate=31669.87/min [1660000], rate=31770.33/min [1670000], rate=31890.52/min [1680000], rate=32000.00/min [1690000], rate=32108.93/min [1700000], rate=32085.56/min [1710000], rate=31952.66/min [1720000], rate=31822.39/min [1730000], rate=31704.34/min [1740000], rate=31578.95/min [1750000], rate=31550.48/min [1760000], rate=31494.18/min [1770000], rate=31457.35/min [1780000], rate=31347.23/min [1790000], rate=31257.28/min [1800000], rate=31168.83/min [1810000], rate=31099.66/min [1820000], rate=31040.36/min [1830000], rate=30981.94/min [1840000], rate=30959.06/min [1850000], rate=30936.45/min [1860000], rate=30897.01/min [1870000], rate=30866.57/min [1880000], rate=30861.83/min [1890000], rate=30865.54/min [1900000], rate=30885.94/min [1910000], rate=30922.83/min [1920000], rate=30959.42/min [1930000], rate=30970.85/min [1940000], rate=30998.67/min [1950000], rate=31026.25/min [1960000], rate=31061.81/min [1970000], rate=31088.90/min [1980000], rate=31132.08/min [1990000], rate=31158.66/min [2000000], rate=31201.25/min [2010000], rate=31243.52/min [2020000], rate=31285.49/min [2030000], rate=31335.22/min [2040000], rate=31384.62/min [2050000], rate=31441.72/min [2060000], rate=31498.47/min [2070000], rate=31554.88/min [2080000], rate=31618.95/min [2090000], rate=31682.67/min [2100000], rate=31746.03/min [2110000], rate=31817.04/min [2120000], rate=31895.69/min [2130000], rate=31973.98/min [2140000], rate=32059.93/min [2150000], rate=32145.53/min [2160000], rate=32230.79/min [2170000], rate=32315.71/min [2180000], rate=32248.52/min [2190000], rate=32166.46/min [2200000], rate=32069.97/min [2210000], rate=32005.79/min [2220000], rate=31934.79/min [2230000], rate=31933.17/min [2240000], rate=31886.12/min [2250000], rate=31862.17/min [2260000], rate=31845.94/min [2270000], rate=31844.75/min [2280000], rate=31836.16/min [2290000], rate=31857.18/min [2300000], rate=31855.96/min [2310000], rate=31884.06/min [2320000], rate=31911.97/min [2330000], rate=31939.68/min [2340000], rate=31959.94/min [2350000], rate=31987.30/min [2360000], rate=32021.71/min [2370000], rate=32063.13/min [2380000], rate=32104.32/min [2390000], rate=32138.05/min [2400000], rate=32178.77/min [2410000], rate=32219.25/min [2420000], rate=32273.84/min [2430000], rate=32320.99/min [2440000], rate=32375.06/min [2450000], rate=32436.01/min [2460000], rate=32496.70/min [2470000], rate=32571.43/min [2480000], rate=32638.74/min [2490000], rate=32712.94/min [2500000], rate=32786.89/min [2510000], rate=32860.57/min [2520000], rate=32934.00/min [2530000], rate=33014.35/min [2540000], rate=33094.46/min [2550000], rate=33188.72/min [2560000], rate=33282.77/min [2570000], rate=33354.96/min [2580000], rate=33441.35/min [2590000], rate=33520.28/min [2600000], rate=33577.27/min [2610000], rate=33641.25/min [2620000], rate=33712.20/min [2630000], rate=33775.68/min [2640000], rate=33853.39/min [2650000], rate=33923.62/min [2660000], rate=34000.85/min [2670000], rate=34085.11/min [2680000], rate=34161.89/min [2690000], rate=34245.70/min [2700000], rate=34322.03/min [2710000], rate=34383.59/min [2720000], rate=34423.12/min [2730000], rate=34469.70/min [2740000], rate=34508.82/min [2750000], rate=34554.97/min [2760000], rate=34600.92/min [2770000], rate=34653.88/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir --filt_file /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 0.00 reads per min processed... 12000000.00 reads per min processed... 18000000.00 reads per min processed... 24000000.00 reads per min processed... 15000000.00 reads per min processed... 18000000.00 reads per min processed... 10500000.00 reads per min processed... 8000000.00 reads per min processed... 6750000.00 reads per min processed... 6000000.00 reads per min processed... 5500000.00 reads per min processed... 5142857.14 reads per min processed... 5200000.00 reads per min processed... 4941176.47 reads per min processed... 4736842.11 reads per min processed... 4800000.00 reads per min processed... 4636363.64 reads per min processed... 4500000.00 reads per min processed... 4384615.38 reads per min processed... 4285714.29 reads per min processed... 4200000.00 reads per min processed... 4125000.00 reads per min processed... 4058823.53 reads per min processed... 4000000.00 reads per min processed... 3947368.42 reads per min processed... 4000000.00 reads per min processed... 3951219.51 reads per min processed... 3906976.74 reads per min processed... 3954545.45 reads per min processed... 3913043.48 reads per min processed... 3957446.81 reads per min processed... 4000000.00 reads per min processed... 3960000.00 reads per min processed... 3923076.92 reads per min processed... 3962264.15 reads per min processed... 3927272.73 reads per min processed... 3894736.84 reads per min processed... 3931034.48 reads per min processed... 3900000.00 reads per min processed... 3934426.23 reads per min processed... 3904761.90 reads per min processed... 3876923.08 reads per min processed... 3909090.91 reads per min processed... 3940298.51 reads per min processed... 4029850.75 reads per min processed... 4058823.53 reads per min processed... 4086956.52 reads per min processed... 4173913.04 reads per min processed... 4140845.07 reads per min processed... 4109589.04 reads per min processed... 4135135.14 reads per min processed... 4105263.16 reads per min processed... 4129870.13 reads per min processed... 4101265.82 reads per min processed... 4125000.00 reads per min processed... 4097560.98 reads per min processed... 4071428.57 reads per min processed... 4094117.65 reads per min processed... 4068965.52 reads per min processed... 4044943.82 reads per min processed... 4066666.67 reads per min processed... 4043478.26 reads per min processed... 4064516.13 reads per min processed... 4042105.26 reads per min processed... 4062500.00 reads per min processed... 4082474.23 reads per min processed... 4060606.06 reads per min processed... 4080000.00 reads per min processed... 4099009.90 reads per min processed... 4077669.90 reads per min processed... 4096153.85 reads per min processed... 4075471.70 reads per min processed... 4093457.94 reads per min processed... 4073394.50 reads per min processed... 4090909.09 reads per min processed... 4071428.57 reads per min processed... 4052631.58 reads per min processed... 4069565.22 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.kKMyXq5Wox/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -2682875.517692 EM: Round [1] log likelihood: -2682389.368662 EM: Round [2] log likelihood: -2682232.831622 EM: Round [3] log likelihood: -2682159.958296 EM: Round [4] log likelihood: -2682120.701241 EM: Round [5] log likelihood: -2682097.711981 EM: Round [6] log likelihood: -2682083.378756 EM: Round [7] log likelihood: -2682073.947602 EM: Round [8] log likelihood: -2682067.441996 EM: Round [9] log likelihood: -2682062.768747 EM: Round [10] log likelihood: -2682059.294982 EM: Round [11] log likelihood: -2682056.637818 EM: Round [12] log likelihood: -2682054.555805 EM: Round [13] log likelihood: -2682052.890825 EM: Round [14] log likelihood: -2682051.535812 EM: Round [15] log likelihood: -2682050.416127 EM: Round [16] log likelihood: -2682049.478419 EM: Round [17] log likelihood: -2682048.683717 EM: Round [18] log likelihood: -2682048.003021 EM: Round [19] log likelihood: -2682047.414392 EM: Round [20] log likelihood: -2682046.900991 EM: Round [21] log likelihood: -2682046.449726 EM: Round [22] log likelihood: -2682046.050296 EM: Round [23] log likelihood: -2682045.694506 EM: Round [24] log likelihood: -2682045.375771 EM: Round [25] log likelihood: -2682045.088750 EM: Round [26] log likelihood: -2682044.829073 EM: Round [27] log likelihood: -2682044.593131 EM: Round [28] log likelihood: -2682044.377926 EM: Round [29] log likelihood: -2682044.180941 EM: Round [30] log likelihood: -2682044.000055 EM: Round [31] log likelihood: -2682043.833464 EM: Round [32] log likelihood: -2682043.679626 EM: Round [33] log likelihood: -2682043.537215 EM: Round [34] log likelihood: -2682043.405082 EM: Round [35] log likelihood: -2682043.282231 EM: Round [36] log likelihood: -2682043.167788 EM: Round [37] log likelihood: -2682043.060988 EM: Round [38] log likelihood: -2682042.961154 EM: Round [39] log likelihood: -2682042.867688 EM: Round [40] log likelihood: -2682042.780057 EM: Round [41] log likelihood: -2682042.697786 EM: Round [42] log likelihood: -2682042.620449 EM: Round [43] log likelihood: -2682042.547663 EM: Round [44] log likelihood: -2682042.479085 EM: Round [45] log likelihood: -2682042.414401 EM: Round [46] log likelihood: -2682042.353330 EM: Round [47] log likelihood: -2682042.295615 EM: Round [48] log likelihood: -2682042.241021 EM: Round [49] log likelihood: -2682042.189336 EM: Round [50] log likelihood: -2682042.140364 EM: Round [51] log likelihood: -2682042.093925 EM: Round [52] log likelihood: -2682042.049856 EM: Round [53] log likelihood: -2682042.008005 EM: Round [54] log likelihood: -2682041.968233 EM: Round [55] log likelihood: -2682041.930411 EM: Round [56] log likelihood: -2682041.894421 EM: Round [57] log likelihood: -2682041.860151 EM: Round [58] log likelihood: -2682041.827500 EM: Round [59] log likelihood: -2682041.796374 EM: Round [60] log likelihood: -2682041.766684 EM: Round [61] log likelihood: -2682041.738348 EM: Round [62] log likelihood: -2682041.711290 EM: Round [63] log likelihood: -2682041.685439 EM: Round [64] log likelihood: -2682041.660729 EM: Round [65] log likelihood: -2682041.637097 EM: Round [66] log likelihood: -2682041.614486 EM: Round [67] log likelihood: -2682041.592841 EM: Round [68] log likelihood: -2682041.572111 EM: Round [69] log likelihood: -2682041.552249 EM: Round [70] log likelihood: -2682041.533210 EM: Round [71] log likelihood: -2682041.514953 EM: Round [72] log likelihood: -2682041.497437 EM: Round [73] log likelihood: -2682041.480625 EM: Round [74] log likelihood: -2682041.464483 EM: Round [75] log likelihood: -2682041.448978 EM: Round [76] log likelihood: -2682041.434078 EM: Round [77] log likelihood: -2682041.419755 EM: Round [78] log likelihood: -2682041.405981 EM: Round [79] log likelihood: -2682041.392729 EM: Round [80] log likelihood: -2682041.379977 EM: Round [81] log likelihood: -2682041.367699 EM: Round [82] log likelihood: -2682041.355875 EM: Round [83] log likelihood: -2682041.344483 EM: Round [84] log likelihood: -2682041.333504 EM: Round [85] log likelihood: -2682041.322920 EM: Round [86] log likelihood: -2682041.312712 EM: Round [87] log likelihood: -2682041.302864 EM: Round [88] log likelihood: -2682041.293360 EM: Round [89] log likelihood: -2682041.284185 EM: Round [90] log likelihood: -2682041.275326 EM: Round [91] log likelihood: -2682041.266767 EM: Round [92] log likelihood: -2682041.258497 EM: Round [93] log likelihood: -2682041.250504 EM: Round [94] log likelihood: -2682041.242775 EM: Round [95] log likelihood: -2682041.235299 EM: Round [96] log likelihood: -2682041.228067 EM: Round [97] log likelihood: -2682041.221068 EM: Round [98] log likelihood: -2682041.214292 EM: Round [99] log likelihood: -2682041.207731 EM: Round [100] log likelihood: -2682041.201376 EM: Round [101] log likelihood: -2682041.195219 EM: Round [102] log likelihood: -2682041.189252 EM: Round [103] log likelihood: -2682041.183467 EM: Round [104] log likelihood: -2682041.177857 EM: Round [105] log likelihood: -2682041.172416 EM: Round [106] log likelihood: -2682041.167136 EM: Round [107] log likelihood: -2682041.162013 EM: Round [108] log likelihood: -2682041.157039 EM: Round [109] log likelihood: -2682041.152209 EM: Round [110] log likelihood: -2682041.147519 EM: Round [111] log likelihood: -2682041.142961 EM: Round [112] log likelihood: -2682041.138533 EM: Round [113] log likelihood: -2682041.134228 EM: Round [114] log likelihood: -2682041.130043 EM: Round [115] log likelihood: -2682041.125973 EM: Round [116] log likelihood: -2682041.122014 EM: Round [117] log likelihood: -2682041.118162 EM: Round [118] log likelihood: -2682041.114413 EM: Round [119] log likelihood: -2682041.110763 EM: Round [120] log likelihood: -2682041.107210 EM: Round [121] log likelihood: -2682041.103749 EM: Round [122] log likelihood: -2682041.100378 EM: Round [123] log likelihood: -2682041.097094 EM: Round [124] log likelihood: -2682041.093893 EM: Round [125] log likelihood: -2682041.090772 EM: Round [126] log likelihood: -2682041.087730 EM: Round [127] log likelihood: -2682041.084763 EM: Round [128] log likelihood: -2682041.081868 EM: Round [129] log likelihood: -2682041.079045 EM: Round [130] log likelihood: -2682041.076289 EM: Round [131] log likelihood: -2682041.073600 EM: Round [132] log likelihood: -2682041.070974 EM: Round [133] log likelihood: -2682041.068410 EM: Round [134] log likelihood: -2682041.065906 EM: Round [135] log likelihood: -2682041.063460 EM: Round [136] log likelihood: -2682041.061070 EM: Round [137] log likelihood: -2682041.058735 EM: Round [138] log likelihood: -2682041.056452 EM: Round [139] log likelihood: -2682041.054220 EM: Round [140] log likelihood: -2682041.052038 EM: Round [141] log likelihood: -2682041.049904 EM: Round [142] log likelihood: -2682041.047816 EM: Round [143] log likelihood: -2682041.045774 EM: Round [144] log likelihood: -2682041.043776 EM: Round [145] log likelihood: -2682041.041820 EM: Round [146] log likelihood: -2682041.039905 EM: Round [147] log likelihood: -2682041.038031 EM: Round [148] log likelihood: -2682041.036196 EM: Round [149] log likelihood: -2682041.034399 EM: Round [150] log likelihood: -2682041.032638 EM: Round [151] log likelihood: -2682041.030913 EM: Round [152] log likelihood: -2682041.029223 EM: Round [153] log likelihood: -2682041.027567 EM: Round [154] log likelihood: -2682041.025944 EM: Round [155] log likelihood: -2682041.024353 EM: Round [156] log likelihood: -2682041.022793 EM: Round [157] log likelihood: -2682041.021263 EM: Round [158] log likelihood: -2682041.019763 EM: Round [159] log likelihood: -2682041.018291 EM: Round [160] log likelihood: -2682041.016848 EM: Round [161] log likelihood: -2682041.015431 EM: Round [162] log likelihood: -2682041.014042 EM: Round [163] log likelihood: -2682041.012678 EM: Round [164] log likelihood: -2682041.011339 EM: Round [165] log likelihood: -2682041.010025 EM: Round [166] log likelihood: -2682041.008735 EM: Round [167] log likelihood: -2682041.007468 EM: Round [168] log likelihood: -2682041.006223 EM: Round [169] log likelihood: -2682041.005002 EM: Round [170] log likelihood: -2682041.003801 EM: Round [171] log likelihood: -2682041.002622 EM: Round [172] log likelihood: -2682041.001464 EM: Round [173] log likelihood: -2682041.000325 EM: Round [174] log likelihood: -2682040.999207 EM: Round [175] log likelihood: -2682040.998107 EM: Round [176] log likelihood: -2682040.997027 EM: Round [177] log likelihood: -2682040.995964 EM: Round [178] log likelihood: -2682040.994920 EM: Round [179] log likelihood: -2682040.993893 EM: Round [180] log likelihood: -2682040.992883 EM: Round [181] log likelihood: -2682040.991890 EM: Round [182] log likelihood: -2682040.990913 EM: Round [183] log likelihood: -2682040.989953 EM: Round [184] log likelihood: -2682040.989007 EM: Round [185] log likelihood: -2682040.988078 EM: Round [186] log likelihood: -2682040.987163 EM: Round [187] log likelihood: -2682040.986263 EM: Round [188] log likelihood: -2682040.985377 EM: Round [189] log likelihood: -2682040.984505 EM: Round [190] log likelihood: -2682040.983647 EM: Round [191] log likelihood: -2682040.982803 EM: Round [192] log likelihood: -2682040.981971 EM: Round [193] log likelihood: -2682040.981153 EM: Round [194] log likelihood: -2682040.980347 EM: Round [195] log likelihood: -2682040.979554 EM: Round [196] log likelihood: -2682040.978772 EM: Round [197] log likelihood: -2682040.978003 EM: Round [198] log likelihood: -2682040.977245 EM: Round [199] log likelihood: -2682040.976499 EM: Round [200] log likelihood: -2682040.975764 EM: Round [201] log likelihood: -2682040.975040 EM: Round [202] log likelihood: -2682040.974327 EM: Round [203] log likelihood: -2682040.973624 EM: Round [204] log likelihood: -2682040.972932 EM: Round [205] log likelihood: -2682040.972250 EM: Round [206] log likelihood: -2682040.971578 EM: Round [207] log likelihood: -2682040.970916 EM: Round [208] log likelihood: -2682040.970263 EM: Round [209] log likelihood: -2682040.969620 EM: Round [210] log likelihood: -2682040.968986 EM: Round [211] log likelihood: -2682040.968361 EM: Round [212] log likelihood: -2682040.967745 EM: Round [213] log likelihood: -2682040.967138 EM: Round [214] log likelihood: -2682040.966540 EM: Round [215] log likelihood: -2682040.965950 EM: Round [216] log likelihood: -2682040.965369 EM: Round [217] log likelihood: -2682040.964795 EM: Round [218] log likelihood: -2682040.964230 EM: Round [219] log likelihood: -2682040.963673 EM: Round [220] log likelihood: -2682040.963123 EM: Round [221] log likelihood: -2682040.962581 EM: Round [222] log likelihood: -2682040.962046 EM: Round [223] log likelihood: -2682040.961519 EM: Round [224] log likelihood: -2682040.961000 EM: Round [225] log likelihood: -2682040.960487 EM: Round [226] log likelihood: -2682040.959981 EM: Round [227] log likelihood: -2682040.959483 EM: Round [228] log likelihood: -2682040.958991 EM: Round [229] log likelihood: -2682040.958505 EM: Round [230] log likelihood: -2682040.958027 EM: Round [231] log likelihood: -2682040.957555 EM: Round [232] log likelihood: -2682040.957089 EM: Round [233] log likelihood: -2682040.956629 EM: Round [234] log likelihood: -2682040.956176 EM: Round [235] log likelihood: -2682040.955729 EM: Round [236] log likelihood: -2682040.955287 EM: Round [237] log likelihood: -2682040.954852 EM: Round [238] log likelihood: -2682040.954422 EM: Round [239] log likelihood: -2682040.953998 EM: Round [240] log likelihood: -2682040.953580 EM: Round [241] log likelihood: -2682040.953167 EM: Round [242] log likelihood: -2682040.952760 EM: Round [243] log likelihood: -2682040.952358 EM: Round [244] log likelihood: -2682040.951961 EM: Round [245] log likelihood: -2682040.951569 EM: Round [246] log likelihood: -2682040.951183 EM: Round [247] log likelihood: -2682040.950802 EM: Round [248] log likelihood: -2682040.950425 EM: Round [249] log likelihood: -2682040.950054 EM: Round [250] log likelihood: -2682040.949687 EM: Round [251] log likelihood: -2682040.949325 EM: Round [252] log likelihood: -2682040.948968 EM: Round [253] log likelihood: -2682040.948616 EM: Round [254] log likelihood: -2682040.948268 EM: Round [255] log likelihood: -2682040.947924 EM: Round [256] log likelihood: -2682040.947585 EM: Round [257] log likelihood: -2682040.947250 EM: Round [258] log likelihood: -2682040.946920 EM: Round [259] log likelihood: -2682040.946594 EM: Round [260] log likelihood: -2682040.946272 EM: Round [261] log likelihood: -2682040.945954 EM: Round [262] log likelihood: -2682040.945640 EM: Round [263] log likelihood: -2682040.945330 EM: Round [264] log likelihood: -2682040.945024 EM: Round [265] log likelihood: -2682040.944722 EM: Round [266] log likelihood: -2682040.944424 EM: Round [267] log likelihood: -2682040.944130 EM: Round [268] log likelihood: -2682040.943839 EM: Round [269] log likelihood: -2682040.943552 EM: Round [270] log likelihood: -2682040.943269 EM: Round [271] log likelihood: -2682040.942989 EM: Round [272] log likelihood: -2682040.942713 EM: Round [273] log likelihood: -2682040.942440 EM: Round [274] log likelihood: -2682040.942170 EM: Round [275] log likelihood: -2682040.941905 EM: Round [276] log likelihood: -2682040.941642 EM: Round [277] log likelihood: -2682040.941383 EM: Round [278] log likelihood: -2682040.941127 EM: Round [279] log likelihood: -2682040.940874 EM: Round [280] log likelihood: -2682040.940624 EM: Round [281] log likelihood: -2682040.940378 EM: Round [282] log likelihood: -2682040.940134 EM: Round [283] log likelihood: -2682040.939894 EM: Round [284] log likelihood: -2682040.939656 EM: Round [285] log likelihood: -2682040.939422 EM: Round [286] log likelihood: -2682040.939190 EM: Round [287] log likelihood: -2682040.938962 EM: Round [288] log likelihood: -2682040.938736 EM: Round [289] log likelihood: -2682040.938513 EM: Round [290] log likelihood: -2682040.938292 EM: Round [291] log likelihood: -2682040.938075 EM: Round [292] log likelihood: -2682040.937860 EM: Round [293] log likelihood: -2682040.937648 EM: Round [294] log likelihood: -2682040.937439 EM: Round [295] log likelihood: -2682040.937232 EM: Round [296] log likelihood: -2682040.937027 EM: Round [297] log likelihood: -2682040.936825 EM: Round [298] log likelihood: -2682040.936626 EM: Round [299] log likelihood: -2682040.936429 EM: Round [300] log likelihood: -2682040.936235 EM: Round [301] log likelihood: -2682040.936043 EM: Round [302] log likelihood: -2682040.935853 EM: Round [303] log likelihood: -2682040.935666 EM: Round [304] log likelihood: -2682040.935481 EM: Round [305] log likelihood: -2682040.935298 EM: Round [306] log likelihood: -2682040.935118 EM: Round [307] log likelihood: -2682040.934939 EM: Round [308] log likelihood: -2682040.934763 EM: Round [309] log likelihood: -2682040.934589 EM: Round [310] log likelihood: -2682040.934418 EM: Round [311] log likelihood: -2682040.934248 EM: Round [312] log likelihood: -2682040.934080 EM: Round [313] log likelihood: -2682040.933915 EM: Round [314] log likelihood: -2682040.933751 EM: Round [315] log likelihood: -2682040.933590 EM: Round [316] log likelihood: -2682040.933431 EM: Round [317] log likelihood: -2682040.933273 EM: Round [318] log likelihood: -2682040.933117 EM: Round [319] log likelihood: -2682040.932964 EM: Round [320] log likelihood: -2682040.932812 EM: Round [321] log likelihood: -2682040.932662 EM: Round [322] log likelihood: -2682040.932514 EM: Round [323] log likelihood: -2682040.932368 EM: Round [324] log likelihood: -2682040.932223 EM: Round [325] log likelihood: -2682040.932080 EM: Round [326] log likelihood: -2682040.931939 EM: Round [327] log likelihood: -2682040.931800 EM: Round [328] log likelihood: -2682040.931662 EM: Round [329] log likelihood: -2682040.931527 EM: Round [330] log likelihood: -2682040.931392 EM: Round [331] log likelihood: -2682040.931260 EM: Round [332] log likelihood: -2682040.931129 EM: Round [333] log likelihood: -2682040.930999 EM: Round [334] log likelihood: -2682040.930872 EM: Round [335] log likelihood: -2682040.930745 EM: Round [336] log likelihood: -2682040.930621 EM: Round [337] log likelihood: -2682040.930497 EM: Round [338] log likelihood: -2682040.930376 EM: Round [339] log likelihood: -2682040.930256 EM: Round [340] log likelihood: -2682040.930137 EM: Round [341] log likelihood: -2682040.930020 EM: Round [342] log likelihood: -2682040.929904 EM: Round [343] log likelihood: -2682040.929789 EM: Round [344] log likelihood: -2682040.929676 EM: Round [345] log likelihood: -2682040.929565 EM: Round [346] log likelihood: -2682040.929454 EM: Round [347] log likelihood: -2682040.929345 EM: Round [348] log likelihood: -2682040.929238 EM: Round [349] log likelihood: -2682040.929131 EM: Round [350] log likelihood: -2682040.929026 EM: Round [351] log likelihood: -2682040.928923 EM: Round [352] log likelihood: -2682040.928820 EM: Round [353] log likelihood: -2682040.928719 EM: Round [354] log likelihood: -2682040.928619 EM: Round [355] log likelihood: -2682040.928520 EM: Stopping iterations at round 355 due to insufficient improvement in likelihood. EM: Starting log likelihood: -2677462.830742 EM: Round [1] log likelihood: -2677100.316068 EM: Round [2] log likelihood: -2676985.749764 EM: Round [3] log likelihood: -2676934.466976 EM: Round [4] log likelihood: -2676907.976107 EM: Round [5] log likelihood: -2676893.078945 EM: Round [6] log likelihood: -2676884.155902 EM: Round [7] log likelihood: -2676878.519438 EM: Round [8] log likelihood: -2676874.790045 EM: Round [9] log likelihood: -2676872.221002 EM: Round [10] log likelihood: -2676870.388823 EM: Round [11] log likelihood: -2676869.042751 EM: Round [12] log likelihood: -2676868.028277 EM: Round [13] log likelihood: -2676867.246690 EM: Round [14] log likelihood: -2676866.632848 EM: Round [15] log likelihood: -2676866.142523 EM: Round [16] log likelihood: -2676865.744924 EM: Round [17] log likelihood: -2676865.418143 EM: Round [18] log likelihood: -2676865.146289 EM: Round [19] log likelihood: -2676864.917638 EM: Round [20] log likelihood: -2676864.723410 EM: Round [21] log likelihood: -2676864.556935 EM: Round [22] log likelihood: -2676864.413086 EM: Round [23] log likelihood: -2676864.287870 EM: Round [24] log likelihood: -2676864.178147 EM: Round [25] log likelihood: -2676864.081421 EM: Round [26] log likelihood: -2676863.995689 EM: Round [27] log likelihood: -2676863.919327 EM: Round [28] log likelihood: -2676863.851008 EM: Round [29] log likelihood: -2676863.789639 EM: Round [30] log likelihood: -2676863.734312 EM: Round [31] log likelihood: -2676863.684267 EM: Round [32] log likelihood: -2676863.638862 EM: Round [33] log likelihood: -2676863.597554 EM: Round [34] log likelihood: -2676863.559880 EM: Round [35] log likelihood: -2676863.525441 EM: Round [36] log likelihood: -2676863.493892 EM: Round [37] log likelihood: -2676863.464936 EM: Round [38] log likelihood: -2676863.438311 EM: Round [39] log likelihood: -2676863.413789 EM: Round [40] log likelihood: -2676863.391169 EM: Round [41] log likelihood: -2676863.370274 EM: Round [42] log likelihood: -2676863.350946 EM: Round [43] log likelihood: -2676863.333046 EM: Round [44] log likelihood: -2676863.316449 EM: Round [45] log likelihood: -2676863.301043 EM: Round [46] log likelihood: -2676863.286727 EM: Round [47] log likelihood: -2676863.273412 EM: Round [48] log likelihood: -2676863.261016 EM: Round [49] log likelihood: -2676863.249465 EM: Round [50] log likelihood: -2676863.238693 EM: Round [51] log likelihood: -2676863.228639 EM: Round [52] log likelihood: -2676863.219248 EM: Round [53] log likelihood: -2676863.210470 EM: Round [54] log likelihood: -2676863.202259 EM: Round [55] log likelihood: -2676863.194573 EM: Round [56] log likelihood: -2676863.187375 EM: Round [57] log likelihood: -2676863.180628 EM: Round [58] log likelihood: -2676863.174301 EM: Round [59] log likelihood: -2676863.168365 EM: Round [60] log likelihood: -2676863.162791 EM: Round [61] log likelihood: -2676863.157555 EM: Round [62] log likelihood: -2676863.152634 EM: Round [63] log likelihood: -2676863.148007 EM: Round [64] log likelihood: -2676863.143653 EM: Round [65] log likelihood: -2676863.139555 EM: Round [66] log likelihood: -2676863.135695 EM: Round [67] log likelihood: -2676863.132059 EM: Round [68] log likelihood: -2676863.128631 EM: Round [69] log likelihood: -2676863.125398 EM: Round [70] log likelihood: -2676863.122348 EM: Round [71] log likelihood: -2676863.119469 EM: Round [72] log likelihood: -2676863.116751 EM: Round [73] log likelihood: -2676863.114183 EM: Round [74] log likelihood: -2676863.111756 EM: Round [75] log likelihood: -2676863.109461 EM: Round [76] log likelihood: -2676863.107291 EM: Round [77] log likelihood: -2676863.105237 EM: Round [78] log likelihood: -2676863.103293 EM: Round [79] log likelihood: -2676863.101453 EM: Round [80] log likelihood: -2676863.099709 EM: Round [81] log likelihood: -2676863.098056 EM: Round [82] log likelihood: -2676863.096489 EM: Round [83] log likelihood: -2676863.095004 EM: Round [84] log likelihood: -2676863.093594 EM: Round [85] log likelihood: -2676863.092256 EM: Round [86] log likelihood: -2676863.090986 EM: Round [87] log likelihood: -2676863.089779 EM: Round [88] log likelihood: -2676863.088633 EM: Round [89] log likelihood: -2676863.087543 EM: Round [90] log likelihood: -2676863.086507 EM: Round [91] log likelihood: -2676863.085522 EM: Round [92] log likelihood: -2676863.084584 EM: Round [93] log likelihood: -2676863.083692 EM: Round [94] log likelihood: -2676863.082842 EM: Round [95] log likelihood: -2676863.082033 EM: Round [96] log likelihood: -2676863.081261 EM: Round [97] log likelihood: -2676863.080526 EM: Round [98] log likelihood: -2676863.079825 EM: Round [99] log likelihood: -2676863.079156 EM: Round [100] log likelihood: -2676863.078518 EM: Round [101] log likelihood: -2676863.077908 EM: Round [102] log likelihood: -2676863.077327 EM: Round [103] log likelihood: -2676863.076771 EM: Round [104] log likelihood: -2676863.076239 EM: Round [105] log likelihood: -2676863.075731 EM: Round [106] log likelihood: -2676863.075246 EM: Round [107] log likelihood: -2676863.074781 EM: Round [108] log likelihood: -2676863.074336 EM: Round [109] log likelihood: -2676863.073910 EM: Round [110] log likelihood: -2676863.073502 EM: Round [111] log likelihood: -2676863.073111 EM: Round [112] log likelihood: -2676863.072737 EM: Round [113] log likelihood: -2676863.072377 EM: Round [114] log likelihood: -2676863.072032 EM: Round [115] log likelihood: -2676863.071701 EM: Round [116] log likelihood: -2676863.071384 EM: Round [117] log likelihood: -2676863.071079 EM: Round [118] log likelihood: -2676863.070785 EM: Round [119] log likelihood: -2676863.070504 EM: Round [120] log likelihood: -2676863.070233 EM: Round [121] log likelihood: -2676863.069972 EM: Round [122] log likelihood: -2676863.069721 EM: Round [123] log likelihood: -2676863.069479 EM: Round [124] log likelihood: -2676863.069246 EM: Round [125] log likelihood: -2676863.069022 EM: Round [126] log likelihood: -2676863.068806 EM: Round [127] log likelihood: -2676863.068597 EM: Round [128] log likelihood: -2676863.068396 EM: Round [129] log likelihood: -2676863.068202 EM: Round [130] log likelihood: -2676863.068015 EM: Round [131] log likelihood: -2676863.067834 EM: Round [132] log likelihood: -2676863.067658 EM: Round [133] log likelihood: -2676863.067489 EM: Round [134] log likelihood: -2676863.067326 EM: Round [135] log likelihood: -2676863.067167 EM: Round [136] log likelihood: -2676863.067014 EM: Round [137] log likelihood: -2676863.066865 EM: Round [138] log likelihood: -2676863.066721 EM: Round [139] log likelihood: -2676863.066582 EM: Round [140] log likelihood: -2676863.066447 EM: Round [141] log likelihood: -2676863.066316 EM: Round [142] log likelihood: -2676863.066188 EM: Round [143] log likelihood: -2676863.066065 EM: Round [144] log likelihood: -2676863.065945 EM: Round [145] log likelihood: -2676863.065828 EM: Round [146] log likelihood: -2676863.065715 EM: Round [147] log likelihood: -2676863.065605 EM: Round [148] log likelihood: -2676863.065498 EM: Round [149] log likelihood: -2676863.065393 EM: Round [150] log likelihood: -2676863.065292 EM: Round [151] log likelihood: -2676863.065193 EM: Stopping iterations at round 151 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 206277902 > /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir > /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir --annotate /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir -done, see /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 731, filtered: 4229) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.kKMyXq5Wox/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.kKMyXq5Wox/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000246465.1] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000260413.1] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGL.g@-ext] WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000287444.1] WARNING, no entry stored in dbm for [ENSG00000282458.1] WARNING, no entry stored in dbm for [ENSG00000241104.5] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000260727.2] WARNING, no entry stored in dbm for [ENSG00000260911.2] WARNING, no entry stored in dbm for [ENSG00000185710.9] WARNING, no entry stored in dbm for [ENSG00000254485.5] WARNING, no entry stored in dbm for [ENSG00000228109.1] WARNING, no entry stored in dbm for [ENSG00000271699.5] WARNING, no entry stored in dbm for [ENSG00000203413.3] WARNING, no entry stored in dbm for [ENSG00000226240.2] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000225851.1] WARNING, no entry stored in dbm for [ENSG00000123201.14] WARNING, no entry stored in dbm for [ENSG00000257403.2] WARNING, no entry stored in dbm for [ENSG00000189149.12] WARNING, no entry stored in dbm for [ENSG00000225292.2] WARNING, no entry stored in dbm for [ENSG00000280136.2] WARNING, no entry stored in dbm for [ENSG00000284649.1] WARNING, no entry stored in dbm for [ENSG00000234911.2] WARNING, no entry stored in dbm for [ENSG00000230559.1] WARNING, no entry stored in dbm for [ENSG00000214433.4] WARNING, no entry stored in dbm for [ENSG00000215483.11] WARNING, no entry stored in dbm for [ENSG00000230869.1] WARNING, no entry stored in dbm for [ENSG00000272140.2] WARNING, no 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WARNING, no entry stored in dbm for [ENSG00000231793.5] WARNING, no entry stored in dbm for [ENSG00000254610.3] WARNING, no entry stored in dbm for [ENSG00000273819.1] WARNING, no entry stored in dbm for [ENSG00000225292.2] WARNING, no entry stored in dbm for [ENSG00000277146.1] WARNING, no entry stored in dbm for [ENSG00000255325.2] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000223508.5] WARNING, no entry stored in dbm for [ENSG00000278834.1] WARNING, no entry stored in dbm for [ENSG00000227893.1] WARNING, no entry stored in dbm for [ENSG00000244479.7] WARNING, no entry stored in dbm for [ENSG00000204959.4] WARNING, no entry stored in dbm for [ENSG00000234226.5] WARNING, no entry stored in dbm for [ENSG00000248323.7] WARNING, no entry stored in dbm for [ENSG00000232527.8] WARNING, no entry stored in dbm for [ENSG00000272779.1] WARNING, no entry stored in dbm for [ENSG00000285219.2] WARNING, no entry stored in dbm for 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entry stored in dbm for [ENSG00000231365.6] WARNING, no entry stored in dbm for [ENSG00000286125.1] WARNING, no entry stored in dbm for [ENSG00000285106.2] WARNING, no entry stored in dbm for [ENSG00000239969.5] WARNING, no entry stored in dbm for [ENSG00000234036.4] WARNING, no entry stored in dbm for [ENSG00000217268.1] WARNING, no entry stored in dbm for [ENSG00000131002.12] WARNING, no entry stored in dbm for [ENSG00000131002.12] WARNING, no entry stored in dbm for [ENSG00000108442.2] WARNING, no entry stored in dbm for [ENSG00000237298.10] WARNING, no entry stored in dbm for [ENSG00000242759.8] WARNING, no entry stored in dbm for [ENSG00000232894.1] WARNING, no entry stored in dbm for [ENSG00000277146.1] WARNING, no entry stored in dbm for [ENSG00000214881.4] WARNING, no entry stored in dbm for [ENSG00000223559.1] WARNING, no entry stored in dbm for [ENSG00000226674.11] WARNING, no entry stored in dbm for [ENSG00000264538.6] WARNING, no entry stored in dbm for [ENSG00000181984.11] WARNING, no entry stored in dbm for [ENSG00000264538.6] WARNING, no entry stored in dbm for [ENSG00000286694.1] WARNING, no entry stored in dbm for [ENSG00000270362.1] WARNING, no entry stored in dbm for [ENSG00000203280.4] WARNING, no entry stored in dbm for [ENSG00000226243.1] WARNING, no entry stored in dbm for [ENSG00000259905.7] WARNING, no entry stored in dbm for [ENSG00000259905.7] WARNING, no entry stored in dbm for [ENSG00000232472.1] WARNING, no entry stored in dbm for [ENSG00000258867.6] WARNING, no entry stored in dbm for [ENSG00000261713.6] WARNING, no entry stored in dbm for [ENSG00000272589.1] WARNING, no entry stored in dbm for [ENSG00000258704.6] WARNING, no entry stored in dbm for [ENSG00000274265.5] WARNING, no entry stored in dbm for [ENSG00000233532.6] WARNING, no entry stored in dbm for [ENSG00000249244.1] WARNING, no entry stored in dbm for [ENSG00000232472.1] WARNING, no entry stored in dbm for [ENSG00000158482.10] WARNING, no entry stored in dbm for 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in dbm for [ENSG00000230629.2] WARNING, no entry stored in dbm for [ENSG00000219747.1] WARNING, no entry stored in dbm for [ENSG00000240246.1] WARNING, no entry stored in dbm for [ENSG00000215002.2] WARNING, no entry stored in dbm for [ENSG00000269244.1] WARNING, no entry stored in dbm for [ENSG00000223508.5] WARNING, no entry stored in dbm for [ENSG00000262898.3] WARNING, no entry stored in dbm for [ENSG00000239199.1] WARNING, no entry stored in dbm for [ENSG00000243181.2] WARNING, no entry stored in dbm for [ENSG00000241654.1] WARNING, no entry stored in dbm for [ENSG00000233597.3] WARNING, no entry stored in dbm for [ENSG00000223001.1] WARNING, no entry stored in dbm for [ENSG00000234500.1] WARNING, no entry stored in dbm for [ENSG00000228335.1] WARNING, no entry stored in dbm for [ENSG00000266969.1] WARNING, no entry stored in dbm for [ENSG00000260930.2] WARNING, no entry stored in dbm for [ENSG00000270025.2] WARNING, no entry stored in dbm for [ENSG00000237130.1] WARNING, no entry stored in dbm for [ENSG00000219700.1] WARNING, no entry stored in dbm for [ENSG00000229939.1] WARNING, no entry stored in dbm for [ENSG00000230487.8] WARNING, no entry stored in dbm for [ENSG00000257621.8] WARNING, no entry stored in dbm for [ENSG00000248927.1] WARNING, no entry stored in dbm for [ENSG00000237054.9] WARNING, no entry stored in dbm for [ENSG00000270706.1] WARNING, no entry stored in dbm for [ENSG00000226963.1] WARNING, no entry stored in dbm for [ENSG00000224186.8] WARNING, no entry stored in dbm for [ENSG00000250842.1] WARNING, no entry stored in dbm for [ENSG00000235431.2] WARNING, no entry stored in dbm for [ENSG00000288106.1] WARNING, no entry stored in dbm for [ENSG00000254973.2] WARNING, no entry stored in dbm for [ENSG00000267665.2] WARNING, no entry stored in dbm for [ENSG00000232000.3] WARNING, no entry stored in dbm for [ENSG00000270571.2] WARNING, no entry stored in dbm for [ENSG00000274461.2] WARNING, no entry stored in dbm for [ENSG00000224477.5] WARNING, no entry stored in dbm for [ENSG00000286451.1] WARNING, no entry stored in dbm for [ENSG00000227205.4] WARNING, no entry stored in dbm for [ENSG00000257864.1] WARNING, no entry stored in dbm for [ENSG00000225856.2] WARNING, no entry stored in dbm for [ENSG00000273344.1] WARNING, no entry stored in dbm for [ENSG00000237828.1] WARNING, no entry stored in dbm for [ENSG00000183444.10] WARNING, no entry stored in dbm for [ENSG00000179799.9] WARNING, no entry stored in dbm for [ENSG00000184669.9] WARNING, no entry stored in dbm for [ENSG00000285886.1] WARNING, no entry stored in dbm for [ENSG00000258853.1] WARNING, no entry stored in dbm for [ENSG00000254968.7] WARNING, no entry stored in dbm for [ENSG00000213212.3] WARNING, no entry stored in dbm for [ENSG00000268061.5] WARNING, no entry stored in dbm for [ENSG00000223566.1] WARNING, no entry stored in dbm for [ENSG00000260549.2] WARNING, no entry stored in dbm for [ENSG00000234456.8] WARNING, no entry stored in dbm for [ENSG00000238217.6] WARNING, no entry stored in dbm for [ENSG00000215278.4] WARNING, no entry stored in dbm for [ENSG00000263923.1] WARNING, no entry stored in dbm for [ENSG00000267278.6] WARNING, no entry stored in dbm for [ENSG00000248973.3] WARNING, no entry stored in dbm for [ENSG00000251432.7] WARNING, no entry stored in dbm for [ENSG00000206187.4] WARNING, no entry stored in dbm for [ENSG00000281903.2] WARNING, no entry stored in dbm for [ENSG00000256591.5] WARNING, no entry stored in dbm for [ENSG00000272690.6] WARNING, no entry stored in dbm for [ENSG00000241383.2] WARNING, no entry stored in dbm for [ENSG00000225975.7] WARNING, no entry stored in dbm for [ENSG00000235532.1] WARNING, no entry stored in dbm for [ENSG00000218510.8] WARNING, no entry stored in dbm for [ENSG00000234737.1] WARNING, no entry stored in dbm for [ENSG00000219559.1] WARNING, no entry stored in dbm for [ENSG00000224344.1] WARNING, no entry stored in dbm for [ENSG00000267325.2] WARNING, no entry stored in dbm for [ENSG00000259673.6] WARNING, no entry stored in dbm for [ENSG00000286349.1] WARNING, no entry stored in dbm for [ENSG00000286675.1] WARNING, no entry stored in dbm for [ENSG00000286675.1] WARNING, no entry stored in dbm for [ENSG00000286848.1] WARNING, no entry stored in dbm for [ENSG00000227733.10] WARNING, no entry stored in dbm for [ENSG00000205940.8] WARNING, no entry stored in dbm for [ENSG00000231434.1] WARNING, no entry stored in dbm for [ENSG00000229391.7] WARNING, no entry stored in dbm for [ENSG00000237005.1] WARNING, no entry stored in dbm for [ENSG00000236012.2] WARNING, no entry stored in dbm for [ENSG00000210176.1] WARNING, no entry stored in dbm for [ENSG00000206159.11] WARNING, no entry stored in dbm for [ENSG00000232226.2] WARNING, no entry stored in dbm for [ENSG00000183666.17] WARNING, no entry stored in dbm for [ENSG00000226259.10] WARNING, no entry stored in dbm for [ENSG00000230596.3] WARNING, no entry stored in dbm for [ENSG00000166104.15] WARNING, no entry stored in dbm for [ENSG00000166104.15] WARNING, no entry stored in dbm for [ENSG00000224520.2] WARNING, no entry stored in dbm for [ENSG00000236528.1] WARNING, no entry stored in dbm for [ENSG00000285106.2] WARNING, no entry stored in dbm for [ENSG00000269609.6] WARNING, no entry stored in dbm for [ENSG00000224032.7] WARNING, no entry stored in dbm for [ENSG00000254229.2] WARNING, no entry stored in dbm for [ENSG00000250075.7] WARNING, no entry stored in dbm for [ENSG00000244306.11] WARNING, no entry stored in dbm for [ENSG00000248539.1] WARNING, no entry stored in dbm for [ENSG00000260267.1] WARNING, no entry stored in dbm for [ENSG00000227725.3] WARNING, no entry stored in dbm for [ENSG00000243679.1] WARNING, no entry stored in dbm for [ENSG00000255384.1] WARNING, no entry stored in dbm for [ENSG00000280179.1] WARNING, no entry stored in dbm for [ENSG00000133136.4] WARNING, no entry stored in dbm for [ENSG00000232977.7] WARNING, no entry stored in dbm for [ENSG00000266904.6] WARNING, no entry stored in dbm for [ENSG00000237773.7] WARNING, no entry stored in dbm for [ENSG00000278969.1] WARNING, no entry stored in dbm for [ENSG00000286136.2] WARNING, no entry stored in dbm for [ENSG00000279175.1] WARNING, no entry stored in dbm for [ENSG00000253843.1] WARNING, no entry stored in dbm for [ENSG00000201098.1] WARNING, no entry stored in dbm for [ENSG00000251548.1] WARNING, no entry stored in dbm for [ENSG00000196922.10] WARNING, no entry stored in dbm for [ENSG00000233098.9] WARNING, no entry stored in dbm for [ENSG00000253773.3] WARNING, no entry stored in dbm for [ENSG00000261092.1] WARNING, no entry stored in dbm for [ENSG00000224599.1] WARNING, no entry stored in dbm for [ENSG00000204177.10] WARNING, no entry stored in dbm for [ENSG00000235148.2] WARNING, no entry stored in dbm for [ENSG00000279022.1] WARNING, no entry stored in dbm for [ENSG00000227883.1] WARNING, no entry stored in dbm for [ENSG00000226051.8] WARNING, no entry stored in dbm for [ENSG00000231246.2] WARNING, no entry stored in dbm for [ENSG00000263649.1] WARNING, no entry stored in dbm for [ENSG00000288633.1] WARNING, no entry stored in dbm for [ENSG00000256591.5] WARNING, no entry stored in dbm for [ENSG00000227698.1] WARNING, no entry stored in dbm for [ENSG00000237298.10] WARNING, no entry stored in dbm for [ENSG00000224905.7] WARNING, no entry stored in dbm for [ENSG00000215559.8] WARNING, no entry stored in dbm for [ENSG00000240652.1] WARNING, no entry stored in dbm for [ENSG00000239809.1] WARNING, no entry stored in dbm for [ENSG00000254721.1] WARNING, no entry stored in dbm for [ENSG00000231355.1] WARNING, no entry stored in dbm for [ENSG00000230006.7] WARNING, no entry stored in dbm for [ENSG00000287040.1] WARNING, no entry stored in dbm for [ENSG00000270780.1] WARNING, no entry stored in dbm for [ENSG00000234589.4] WARNING, no entry stored in dbm for [ENSG00000227619.3] WARNING, no entry stored in dbm for [ENSG00000235749.3] WARNING, no entry stored in dbm for [ENSG00000213080.3] WARNING, no entry stored in dbm for [ENSG00000228781.1] WARNING, no entry stored in dbm for [ENSG00000233727.1] WARNING, no entry stored in dbm for [ENSG00000275834.1] WARNING, no entry stored in dbm for [ENSG00000230628.1] WARNING, no entry stored in dbm for [ENSG00000261556.10] WARNING, no entry stored in dbm for [ENSG00000283773.1] WARNING, no entry stored in dbm for [ENSG00000287449.1] WARNING, no entry stored in dbm for [ENSG00000244471.6] WARNING, no entry stored in dbm for [ENSG00000278784.1] WARNING, no entry stored in dbm for [ENSG00000244733.5] WARNING, no entry stored in dbm for [ENSG00000270792.6] WARNING, no entry stored in dbm for [ENSG00000231029.2] WARNING, no entry stored in dbm for [ENSG00000260022.1] WARNING, no entry stored in dbm for [ENSG00000215022.7] WARNING, no entry stored in dbm for [ENSG00000279861.1] WARNING, no entry stored in dbm for [ENSG00000224016.2] WARNING, no entry stored in dbm for [ENSG00000268496.1] WARNING, no entry stored in dbm for [ENSG00000272779.1] WARNING, no entry stored in dbm for [ENSG00000275431.1] WARNING, no entry stored in dbm for [ENSG00000173077.16] WARNING, no entry stored in dbm for [ENSG00000277702.1] WARNING, no entry stored in dbm for [ENSG00000246596.7] WARNING, no entry stored in dbm for [ENSG00000229930.1] WARNING, no entry stored in dbm for [ENSG00000248969.1] WARNING, no entry stored in dbm for [ENSG00000280407.2] WARNING, no entry stored in dbm for [ENSG00000280407.2] WARNING, no entry stored in dbm for [ENSG00000258140.2] WARNING, no entry stored in dbm for [ENSG00000284675.1] WARNING, no entry stored in dbm for [ENSG00000243199.1] WARNING, no entry stored in dbm for [ENSG00000240611.1] WARNING, no entry stored in dbm for [ENSG00000236120.7] WARNING, no entry stored in dbm for [ENSG00000254129.1] WARNING, no entry stored in dbm for [ENSG00000245025.3] WARNING, no entry stored in dbm for [ENSG00000234797.5] WARNING, no entry stored in dbm for [ENSG00000245025.3] WARNING, no entry stored in dbm for [ENSG00000274425.1] WARNING, no entry stored in dbm for [ENSG00000260874.5] WARNING, no entry stored in dbm for [ENSG00000279269.1] WARNING, no entry stored in dbm for [ENSG00000253982.2] WARNING, no entry stored in dbm for [ENSG00000287703.1] WARNING, no entry stored in dbm for [ENSG00000239268.3] WARNING, no entry stored in dbm for [ENSG00000276538.1] WARNING, no entry stored in dbm for [ENSG00000224016.2] WARNING, no entry stored in dbm for [ENSG00000227910.1] WARNING, no entry stored in dbm for [ENSG00000288633.1] WARNING, no entry stored in dbm for [ENSG00000187953.10] WARNING, no entry stored in dbm for [ENSG00000288620.1] WARNING, no entry stored in dbm for [ENSG00000288620.1] WARNING, no entry stored in dbm for [ENSG00000187953.10] WARNING, no entry stored in dbm for [ENSG00000254316.1] WARNING, no entry stored in dbm for [ENSG00000253676.1] WARNING, no entry stored in dbm for [ENSG00000253107.1] WARNING, no entry stored in dbm for [ENSG00000279678.1] WARNING, no entry stored in dbm for [ENSG00000287022.1] WARNING, no entry stored in dbm for [ENSG00000236501.6] WARNING, no entry stored in dbm for [ENSG00000228010.6] WARNING, no entry stored in dbm for [ENSG00000283674.3] WARNING, no entry stored in dbm for [ENSG00000252651.1] WARNING, no entry stored in dbm for [ENSG00000259475.1] WARNING, no entry stored in dbm for [ENSG00000286024.1] WARNING, no entry stored in dbm for [ENSG00000255351.1] WARNING, no entry stored in dbm for [ENSG00000258827.2] WARNING, no entry stored in dbm for [ENSG00000279689.1] WARNING, no entry stored in dbm for [ENSG00000273361.1] WARNING, no entry stored in dbm for [ENSG00000240418.1] WARNING, no entry stored in dbm for [ENSG00000282393.1] WARNING, no entry stored in dbm for [ENSG00000277146.1] WARNING, no entry stored in dbm for [ENSG00000282924.1] WARNING, no entry stored in dbm for [ENSG00000234750.1] WARNING, no entry stored in dbm for [ENSG00000267007.1] WARNING, no entry stored in dbm for [ENSG00000235431.2] WARNING, no entry stored in dbm for [ENSG00000286068.1] WARNING, no entry stored in dbm for [ENSG00000248911.2] WARNING, no entry stored in dbm for [ENSG00000266801.1] WARNING, no entry stored in dbm for [ENSG00000284649.1] WARNING, no entry stored in dbm for [ENSG00000261273.1] WARNING, no entry stored in dbm for [ENSG00000267984.1] WARNING, no entry stored in dbm for [ENSG00000249673.7] WARNING, no entry stored in dbm for [ENSG00000276548.1] WARNING, no entry stored in dbm for [ENSG00000189149.12] WARNING, no entry stored in dbm for [ENSG00000276548.1] WARNING, no entry stored in dbm for [ENSG00000257403.2] WARNING, no entry stored in dbm for [ENSG00000257403.2] WARNING, no entry stored in dbm for [ENSG00000261273.1] WARNING, no entry stored in dbm for [ENSG00000267633.1] WARNING, no entry stored in dbm for [ENSG00000250928.1] WARNING, no entry stored in dbm for [ENSG00000266869.2] WARNING, no entry stored in dbm for [ENSG00000267449.1] WARNING, no entry stored in dbm for [ENSG00000230825.2] WARNING, no entry stored in dbm for [ENSG00000274712.2] WARNING, no entry stored in dbm for [ENSG00000274080.1] WARNING, no entry stored in dbm for [ENSG00000287799.1] WARNING, no entry stored in dbm for [ENSG00000230305.2] WARNING, no entry stored in dbm for [ENSG00000214243.3] WARNING, no entry stored in dbm for [ENSG00000241057.2] WARNING, no entry stored in dbm for [ENSG00000272655.2] WARNING, no entry stored in dbm for [ENSG00000228204.2] WARNING, no entry stored in dbm for [ENSG00000267049.1] WARNING, no entry stored in dbm for [ENSG00000267698.1] WARNING, no entry stored in dbm for [ENSG00000223597.3] * STAR-Fusion complete. See output: /tmp/nxf.kKMyXq5Wox/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)