Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/3b965a2058d362817df7005f97a833/1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/eb7d8fffbd65e3ba7d68db7aa5ec08/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/eb7d8fffbd65e3ba7d68db7aa5ec08/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  1173_C31_T1_RNA_SLD_01_A23T55JLT4_2: vaf_p90=1.000000 -> CLEAN

Output saved to: 1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.predictions.csv
Summary: 0/1 samples flagged as contaminated