.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (1173_C31_T1_RNA_SLD_01_A23T55JLT4_2)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/13c7979779cc8f4e8e44c01bc6ab78/.command.sh
Size: 201 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_WHOLE_BAM_SATURATION (1173_C31_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

#!/bin/bash -euo pipefail
set -euxo pipefail

seqtool saturation -region 'chr20' \
    "1173_C31_T1_RNA_SLD_01_A23T55JLT4_2.md.bam" > 1173_C31_T1_RNA_SLD_01_A23T55JLT4_2_full_bam_saturation_values.txt