File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/612d54a94a259e91e521bdca0627e6/.command.log
Size
732 bytes
Task
NFCORE_RNAFUSION:RNAFUSION:RNA_CONTAMINATION_DETECTION_WORKFLOW:PREDICT_CONTAMINATION (1173_NMN_T1_RNA_SLD_01_A23T55JLT4_2)
Attempt

Content

View in new tab 
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e1/1a9d989b14940a542a604c1b4999df/1173_NMN_T1_RNA_SLD_01_A23T55JLT4_2.features.csv
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/612d54a94a259e91e521bdca0627e6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a5/612d54a94a259e91e521bdca0627e6/.command.run
==> STAGING COMPLETE (3 inputs)

Predicting contamination for 1 sample(s)...
Detection threshold: VAF_p90 < 0.9999
Level estimation: contamination_pct = -215.87 * vaf_p90 + 215.65

  1173_NMN_T1_RNA_SLD_01_A23T55JLT4_2: vaf_p90=1.000000 -> CLEAN

Output saved to: 1173_NMN_T1_RNA_SLD_01_A23T55JLT4_2.predictions.csv
Summary: 0/1 samples flagged as contaminated