Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e7/b59343211ed93627d791eb1d570043/1173_JLC_T1_RNA_SLD_01_A23T55JLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/3693d70bc16bf9b5e0ed24a0f1b5a9/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6b/3693d70bc16bf9b5e0ed24a0f1b5a9/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory