Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c6/ef62e0fc776104441e416bc64bd3ed/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_2.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/ac8d07692f30e277fe595040237754/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1e/ac8d07692f30e277fe595040237754/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory