Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/23/5caf471a2a77592746b544b2666166/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_2.Aligned.sortedByCoord.out.bam Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/1c17212a8061396ecce5bc8b4a975f/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ad/1c17212a8061396ecce5bc8b4a975f/.command.run ==> STAGING COMPLETE (3 inputs) PAIRED_END_BAM_INPUT Processed 1000000 records Processed 2000000 records Processed 3000000 records Processed 4000000 records Processed 5000000 records Processed 6000000 records Processed 7000000 records Processed 8000000 records Processed 9000000 records Processed 10000000 records Processed 11000000 records Processed 12000000 records Processed 13000000 records Processed 14000000 records Processed 15000000 records Processed 16000000 records Processed 17000000 records Processed 18000000 records Processed 19000000 records Processed 20000000 records Processed 21000000 records Processed 22000000 records Processed 23000000 records Processed 24000000 records Processed 25000000 records Processed 26000000 records Processed 27000000 records Processed 28000000 records Processed 29000000 records Processed 30000000 records Processed 31000000 records Processed 32000000 records Processed 33000000 records Processed 34000000 records Processed 35000000 records Processed 36000000 records Processed 37000000 records Processed 38000000 records Processed 39000000 records Processed 40000000 records Processed 41000000 records Processed 42000000 records Processed 43000000 records Processed 44000000 records Processed 45000000 records Processed 46000000 records Processed 47000000 records Processed 48000000 records Processed 49000000 records Processed 50000000 records Processed 51000000 records Processed 52000000 records Processed 53000000 records Processed 54000000 records Processed 55000000 records Processed 56000000 records Processed 57000000 records Processed 58000000 records Processed 59000000 records Processed 60000000 records Processed 61000000 records Processed 62000000 records Processed 63000000 records Processed 64000000 records Processed 65000000 records Processed 66000000 records Processed 67000000 records Processed 68000000 records Processed 69000000 records Processed 70000000 records Processed 71000000 records Processed 72000000 records Processed 73000000 records Processed 74000000 records Processed 75000000 records Processed 76000000 records Processed 77000000 records Processed 78000000 records Processed 79000000 records Processed 80000000 records Processed 81000000 records Processed 82000000 records Processed 83000000 records Processed 84000000 records Processed 85000000 records Processed 86000000 records Processed 87000000 records Processed 88000000 records Processed 89000000 records Processed 90000000 records Processed 91000000 records Processed 92000000 records Processed 93000000 records Processed 94000000 records Processed 95000000 records Processed 96000000 records Processed 97000000 records Processed 98000000 records Processed 99000000 records Processed 100000000 records Processed 101000000 records Processed 102000000 records Processed 103000000 records Processed 104000000 records Processed 105000000 records Processed 106000000 records Processed 107000000 records Processed 108000000 records Processed 109000000 records Processed 110000000 records Processed 111000000 records Processed 112000000 records Processed 113000000 records Processed 114000000 records Processed 115000000 records Processed 116000000 records Processed 117000000 records Processed 118000000 records Processed 119000000 records Processed 120000000 records Processed 121000000 records Processed 122000000 records Processed 123000000 records Processed 124000000 records Processed 125000000 records Processed 126000000 records Processed 127000000 records Processed 128000000 records Processed 129000000 records Processed 130000000 records Processed 131000000 records Processed 132000000 records Processed 133000000 records Processed 134000000 records Processed 135000000 records Processed 136000000 records Processed 137000000 records Processed 138000000 records Processed 139000000 records Processed 140000000 records Processed 141000000 records Processed 142000000 records Processed 143000000 records Processed 144000000 records Processed 145000000 records Processed 146000000 records Processed 147000000 records Processed 148000000 records Processed 149000000 records Processed 150000000 records Processed 151000000 records Processed 152000000 records Processed 153000000 records Processed 154000000 records Processed 155000000 records Processed 156000000 records Processed 157000000 records Processed 158000000 records Processed 159000000 records Processed 160000000 records Processed 161000000 records Processed 162000000 records Processed 163000000 records Processed 164000000 records Processed 165000000 records Processed 166000000 records Processed 167000000 records Processed 168000000 records Processed 169000000 records Processed 170000000 records Processed 171000000 records Processed 172000000 records Processed 173000000 records Processed 174000000 records Processed 175000000 records Processed 176000000 records Processed 177000000 records Processed 178000000 records Processed 179000000 records Processed 180000000 records Processed 181000000 records Processed 182000000 records Processed 183000000 records Processed 184000000 records Processed 185000000 records Processed 186000000 records Processed 187000000 records Processed 188000000 records Processed 189000000 records Processed 190000000 records Processed 191000000 records Processed 192000000 records Processed 193000000 records Processed 194000000 records Processed 195000000 records Processed 196000000 records Processed 197000000 records Processed 198000000 records Processed 199000000 records Processed 200000000 records Processed 201000000 records Processed 202000000 records Processed 203000000 records Processed 204000000 records Processed 205000000 records Processed 206000000 records Processed 207000000 records Processed 208000000 records Processed 209000000 records Processed 210000000 records Processed 211000000 records Processed 212000000 records Processed 213000000 records Processed 214000000 records Processed 215000000 records Processed 216000000 records Processed 217000000 records Processed 218000000 records Processed 219000000 records Processed 220000000 records Processed 221000000 records Processed 222000000 records Processed 223000000 records Processed 224000000 records Processed 225000000 records Processed 226000000 records Processed 227000000 records Processed 228000000 records Processed 229000000 records Processed 230000000 records Processed 231000000 records Processed 232000000 records Processed 233000000 records Processed 234000000 records Processed 235000000 records Processed 236000000 records Processed 237000000 records Processed 238000000 records Processed 239000000 records Processed 240000000 records Processed 241000000 records Processed 242000000 records Processed 243000000 records Processed 244000000 records Processed 245000000 records Processed 246000000 records Processed 247000000 records Processed 248000000 records Processed 249000000 records Processed 250000000 records Processed 251000000 records Processed 252000000 records Processed 253000000 records Processed 254000000 records Processed 255000000 records Processed 256000000 records Processed 257000000 records Processed 258000000 records Processed 259000000 records Processed 260000000 records Processed 261000000 records Processed 262000000 records Processed 263000000 records Processed 264000000 records Processed 265000000 records Processed 266000000 records Processed 267000000 records Processed 268000000 records Processed 269000000 records Processed 270000000 records Processed 271000000 records Processed 272000000 records Processed 273000000 records Processed 274000000 records Processed 275000000 records Processed 276000000 records Processed 277000000 records Processed 278000000 records Processed 279000000 records Processed 280000000 records Processed 281000000 records Processed 282000000 records Processed 283000000 records Processed 284000000 records Processed 285000000 records Processed 286000000 records Processed 287000000 records Processed 288000000 records Processed 289000000 records Processed 290000000 records Processed 291000000 records Processed 292000000 records Processed 293000000 records Processed 294000000 records Processed 295000000 records Processed 296000000 records Processed 297000000 records Processed 298000000 records Processed 299000000 records Processed 300000000 records Processed 301000000 records Processed 302000000 records Processed 303000000 records Processed 304000000 records Processed 305000000 records Processed 306000000 records Processed 307000000 records Processed 308000000 records Processed 309000000 records Processed 310000000 records Processed 311000000 records Processed 312000000 records Processed 313000000 records Processed 314000000 records Processed 315000000 records Processed 316000000 records Processed 317000000 records Processed 318000000 records Processed 319000000 records Processed 320000000 records Processed 321000000 records Processed 322000000 records Processed 323000000 records Processed 324000000 records Processed 325000000 records Processed 326000000 records Processed 327000000 records Processed 328000000 records Processed 329000000 records Processed 330000000 records Processed 331000000 records Processed 332000000 records Processed 333000000 records Processed 334000000 records Processed 335000000 records Processed 336000000 records Processed 337000000 records Processed 338000000 records Processed 339000000 records Processed 340000000 records Processed 341000000 records Processed 342000000 records Processed 343000000 records Processed 344000000 records Processed 345000000 records Processed 346000000 records Processed 347000000 records Processed 348000000 records Processed 349000000 records Processed 350000000 records Processed 351000000 records Processed 352000000 records Processed 353000000 records Processed 354000000 records Processed 355000000 records Processed 356000000 records Processed 357000000 records Processed 358000000 records Processed 359000000 records Processed 360000000 records Processed 361000000 records Processed 362000000 records Processed 363000000 records Processed 364000000 records Processed 365000000 records Processed 366000000 records Processed 367000000 records Processed 368000000 records Processed 369000000 records Processed 370000000 records Processed 371000000 records Processed 372000000 records Processed 373000000 records Processed 374000000 records Processed 375000000 records Processed 376000000 records Processed 377000000 records Processed 378000000 records Processed 379000000 records Processed 380000000 records Processed 381000000 records Processed 382000000 records Processed 383000000 records Processed 384000000 records Processed 385000000 records Processed 386000000 records Processed 387000000 records Processed 388000000 records Processed 389000000 records Processed 390000000 records Processed 391000000 records Processed 392000000 records Processed 393000000 records Processed 394000000 records Processed 395000000 records Processed 396000000 records Processed 397000000 records Processed 398000000 records Processed 399000000 records Processed 400000000 records Processed 401000000 records Processed 402000000 records Processed 403000000 records Processed 404000000 records Processed 405000000 records Processed 406000000 records Processed 407000000 records Processed 408000000 records Processed 409000000 records Processed 410000000 records Processed 411000000 records paired = 203348193 unpaired = 4829915 MERGED PAIRED END READS = 203348193 MATES PROCESSED = 411526301 TOTAL READS = 208178108 DISTINCT READS = 1.12991e+08 DISTINCT COUNTS = 1219 MAX COUNT = 1016232 COUNTS OF 1 = 7.61168e+07 MAX TERMS = 100 OBSERVED COUNTS (1016233) 1 76116838 2 21489861 3 7351596 4 3089164 5 1552129 6 890422 7 562867 8 381329 9 271999 10 201688 11 153539 12 121156 13 97495 14 78962 15 65453 16 54758 17 46413 18 39507 19 34231 20 30164 21 26105 22 23478 23 20678 24 18364 25 16506 26 14762 27 13408 28 12184 29 11220 30 10168 31 9439 32 8770 33 7862 34 7398 35 6924 36 6416 37 6080 38 5607 39 5154 40 4952 41 4523 42 4309 43 4080 44 3767 45 3568 46 3430 47 3299 48 3147 49 2931 50 2741 51 2656 52 2610 53 2406 54 2287 55 2205 56 2108 57 2013 58 2018 59 1844 60 1735 61 1669 62 1633 63 1570 64 1498 65 1444 66 1486 67 1356 68 1284 69 1144 70 1210 71 1180 72 1161 73 1117 74 1071 75 970 76 979 77 873 78 872 79 891 80 853 81 782 82 835 83 786 84 757 85 719 86 774 87 682 88 651 89 681 90 645 91 604 92 633 93 596 94 585 95 619 96 533 97 573 98 534 99 512 100 524 101 507 102 477 103 473 104 439 105 450 106 436 107 434 108 429 109 425 110 426 111 408 112 375 113 404 114 344 115 345 116 349 117 390 118 304 119 336 120 330 121 287 122 320 123 289 124 326 125 256 126 273 127 265 128 255 129 259 130 270 131 247 132 266 133 250 134 226 135 212 136 226 137 242 138 208 139 212 140 197 141 217 142 223 143 213 144 197 145 209 146 202 147 182 148 187 149 208 150 180 151 204 152 168 153 160 154 165 155 161 156 184 157 157 158 135 159 155 160 176 161 144 162 179 163 136 164 157 165 140 166 131 167 122 168 141 169 127 170 128 171 137 172 125 173 106 174 110 175 107 176 118 177 105 178 118 179 103 180 104 181 128 182 118 183 110 184 110 185 106 186 116 187 114 188 82 189 111 190 88 191 106 192 98 193 92 194 92 195 92 196 80 197 90 198 79 199 95 200 82 201 99 202 83 203 94 204 77 205 80 206 77 207 79 208 71 209 70 210 77 211 62 212 65 213 65 214 72 215 67 216 64 217 78 218 69 219 82 220 65 221 66 222 59 223 62 224 63 225 57 226 52 227 64 228 72 229 60 230 61 231 60 232 55 233 75 234 56 235 50 236 59 237 49 238 43 239 55 240 57 241 40 242 49 243 46 244 61 245 43 246 48 247 53 248 55 249 42 250 54 251 43 252 37 253 44 254 42 255 41 256 43 257 44 258 45 259 49 260 55 261 39 262 45 263 52 264 39 265 49 266 35 267 38 268 38 269 36 270 46 271 30 272 47 273 34 274 42 275 35 276 50 277 45 278 43 279 37 280 30 281 43 282 33 283 32 284 32 285 40 286 33 287 31 288 38 289 32 290 27 291 35 292 34 293 41 294 21 295 28 296 27 297 31 298 27 299 28 300 21 301 28 302 27 303 22 304 33 305 21 306 25 307 26 308 29 309 38 310 38 311 31 312 24 313 24 314 33 315 26 316 26 317 25 318 24 319 29 320 28 321 19 322 23 323 24 324 25 325 25 326 22 327 32 328 22 329 28 330 18 331 16 332 19 333 26 334 20 335 25 336 24 337 25 338 12 339 25 340 19 341 27 342 25 343 26 344 27 345 24 346 15 347 12 348 14 349 13 350 20 351 22 352 18 353 17 354 14 355 18 356 21 357 23 358 23 359 18 360 18 361 14 362 13 363 17 364 6 365 17 366 16 367 21 368 12 369 17 370 19 371 10 372 20 373 16 374 12 375 23 376 19 377 18 378 18 379 19 380 18 381 20 382 17 383 14 384 10 385 18 386 16 387 15 388 12 389 18 390 16 391 17 392 21 393 17 394 20 395 10 396 8 397 17 398 19 399 9 400 17 401 8 402 11 403 18 404 13 405 12 406 15 407 18 408 17 409 10 410 9 411 9 412 12 413 11 414 10 415 9 416 16 417 11 418 7 419 12 420 14 421 15 422 8 423 18 424 10 425 7 426 4 427 11 428 13 429 16 430 6 431 17 432 8 433 15 434 11 435 12 436 15 437 14 438 13 439 9 440 9 441 6 442 10 443 12 444 10 445 13 446 13 447 13 448 8 449 8 450 11 451 10 452 13 453 10 454 7 455 14 456 8 457 8 458 12 459 10 460 13 461 5 462 6 463 6 464 6 465 10 466 6 467 7 468 7 469 6 470 8 471 6 472 9 473 9 474 10 475 1 476 7 477 14 478 9 479 10 480 14 481 4 482 12 483 2 484 9 485 3 486 11 487 7 488 6 489 4 490 7 491 9 492 8 493 15 494 11 495 9 496 6 497 6 498 7 499 5 500 7 501 5 502 6 503 5 504 4 505 6 506 3 507 5 508 7 509 6 510 11 511 7 512 7 513 5 514 8 515 5 516 9 517 9 518 7 519 6 520 8 521 7 522 12 523 9 524 2 525 4 526 3 527 6 528 4 529 10 530 6 531 8 532 4 533 2 534 8 535 2 536 10 537 8 538 4 539 9 540 7 541 5 542 2 543 8 544 5 545 3 546 4 547 1 548 2 549 9 550 3 551 9 552 3 553 3 554 5 555 5 556 6 557 5 558 3 559 7 560 6 561 6 562 4 563 4 564 4 565 8 566 5 567 4 568 7 569 3 570 2 571 11 572 11 573 5 574 8 575 7 576 5 577 3 578 5 579 3 580 2 581 6 582 3 583 5 584 2 585 2 586 5 587 4 588 6 589 3 590 3 591 5 592 7 593 3 594 5 595 4 596 3 597 8 598 4 599 5 600 7 601 4 602 7 603 3 604 3 605 2 606 6 607 1 608 3 609 2 610 6 611 4 612 2 613 3 614 3 615 7 616 1 617 4 618 2 619 6 620 4 621 1 622 2 623 3 624 3 625 1 626 1 627 4 628 2 629 4 630 5 631 2 632 3 633 5 634 3 635 3 636 1 637 3 638 5 639 1 640 3 641 3 642 2 643 6 644 2 646 4 647 2 648 3 649 6 650 4 651 3 652 2 653 4 654 1 655 2 656 3 657 2 658 4 659 9 660 5 661 3 662 1 663 2 664 5 665 4 666 2 667 2 668 1 669 4 670 4 671 1 672 2 673 6 674 1 675 5 676 1 677 4 678 1 679 3 680 5 681 1 682 1 683 4 684 2 685 3 686 5 687 2 688 4 689 6 690 5 691 5 692 1 693 5 694 2 695 1 696 3 697 2 698 1 699 3 700 5 701 2 703 1 705 3 706 3 708 2 709 2 710 3 711 4 712 1 713 3 714 3 715 3 716 4 717 1 718 2 719 1 720 1 721 2 722 5 723 3 724 4 725 1 726 4 727 1 728 1 729 3 730 3 731 3 732 3 733 3 734 1 735 4 736 6 737 1 738 1 739 3 740 3 741 1 742 3 743 3 745 3 746 2 747 2 748 4 750 1 752 2 753 1 754 2 755 1 756 2 757 4 758 3 760 4 761 2 762 3 763 4 764 2 765 1 768 3 769 1 770 2 771 4 772 1 774 5 775 3 776 2 778 1 779 1 780 4 781 2 782 1 783 3 784 1 785 2 786 2 787 3 788 3 789 4 790 1 791 4 792 2 793 1 794 1 796 2 798 3 800 1 801 2 802 1 805 4 806 3 807 4 808 1 810 1 811 1 812 4 814 3 815 3 816 2 818 3 819 2 820 2 822 3 823 3 825 2 828 1 829 2 831 1 833 3 834 1 835 2 836 4 838 6 840 3 841 4 842 1 843 2 844 3 845 1 846 1 847 2 848 1 849 3 850 3 851 1 854 1 855 2 856 1 858 2 859 4 860 3 862 3 865 1 866 1 867 1 868 1 870 3 871 4 872 1 874 2 875 2 877 1 878 2 880 1 882 4 883 1 889 3 890 2 891 1 892 1 893 3 896 1 897 1 898 2 902 3 903 1 904 3 907 2 909 2 910 3 912 1 914 1 915 1 916 2 917 1 919 1 923 2 924 3 925 2 926 1 928 1 929 2 931 2 932 1 933 1 934 1 935 1 936 2 937 1 940 1 942 2 943 2 944 1 945 1 946 1 949 2 951 1 952 2 953 1 954 1 956 3 957 1 958 1 959 1 960 1 961 2 965 2 966 1 967 1 970 1 972 2 973 1 974 1 975 1 976 3 977 1 978 2 979 1 980 3 983 2 985 2 987 1 989 1 990 1 991 1 992 2 993 1 994 1 995 1 996 1 997 1 998 2 999 1 1000 1 1002 1 1004 2 1005 2 1007 1 1008 2 1009 2 1011 2 1014 2 1015 2 1018 1 1019 2 1021 1 1022 1 1029 1 1031 1 1035 1 1039 1 1040 1 1041 1 1042 2 1043 2 1045 1 1046 1 1047 1 1051 2 1052 1 1055 2 1059 2 1060 1 1062 1 1063 2 1065 1 1066 1 1067 1 1068 1 1069 1 1071 3 1074 3 1075 1 1078 1 1080 2 1083 2 1085 2 1088 1 1090 1 1092 1 1093 1 1095 2 1097 1 1098 1 1101 1 1102 2 1103 1 1105 1 1110 1 1115 1 1119 1 1124 2 1125 1 1127 1 1131 1 1132 1 1133 1 1136 1 1138 1 1140 1 1141 2 1142 1 1143 1 1145 1 1147 1 1150 1 1151 1 1158 2 1163 1 1171 1 1173 2 1174 1 1175 1 1177 1 1184 1 1191 1 1195 1 1199 1 1201 2 1204 2 1205 1 1208 2 1209 2 1212 1 1217 2 1219 1 1226 1 1230 1 1235 2 1239 1 1240 1 1246 1 1247 2 1254 3 1263 1 1267 1 1268 1 1269 1 1270 1 1277 1 1278 1 1280 1 1282 1 1284 1 1287 1 1290 2 1292 1 1295 1 1296 1 1297 1 1301 1 1302 3 1303 1 1307 1 1308 1 1312 1 1315 1 1319 1 1326 1 1330 1 1334 1 1345 1 1348 2 1349 1 1351 1 1352 1 1353 1 1356 1 1360 1 1362 1 1365 1 1366 1 1374 1 1376 2 1377 1 1392 1 1393 1 1396 1 1399 1 1402 1 1406 1 1407 1 1410 1 1424 1 1426 1 1431 1 1447 1 1452 2 1454 1 1461 1 1462 1 1466 1 1467 1 1471 1 1475 1 1476 2 1480 1 1481 1 1505 1 1517 1 1526 1 1527 1 1530 1 1532 1 1533 1 1537 1 1550 1 1557 1 1561 1 1563 1 1579 1 1588 1 1590 1 1609 1 1613 1 1615 1 1618 1 1647 1 1655 1 1668 1 1678 1 1683 1 1696 1 1714 1 1719 1 1721 2 1740 1 1757 1 1760 1 1768 1 1771 2 1774 1 1776 1 1791 1 1811 1 1813 1 1815 1 1832 1 1839 1 1840 1 1846 1 1860 1 1867 1 1874 1 1886 1 1892 1 1897 1 1899 1 1918 1 1921 1 1947 1 1949 1 1965 1 1975 1 1979 2 1983 1 1991 1 2014 1 2048 1 2049 1 2053 1 2056 2 2065 1 2071 1 2083 2 2085 1 2093 1 2101 1 2109 1 2118 1 2141 1 2143 1 2150 1 2170 1 2185 1 2198 1 2203 1 2205 1 2215 1 2216 1 2227 1 2238 1 2244 1 2248 1 2260 1 2266 1 2268 1 2277 1 2289 1 2331 1 2332 1 2333 1 2337 1 2405 1 2409 1 2411 1 2456 1 2472 1 2506 1 2534 1 2577 1 2672 1 2692 1 2805 1 2855 1 2897 1 2920 1 2986 1 3053 1 3076 1 3083 1 3189 1 3323 1 3403 1 3458 1 3464 1 3605 1 3723 1 3904 1 4498 1 5055 1 5071 1 5256 1 5409 1 5883 1 6407 1 7708 1 15046 1 16432 1 55820 1 1016232 1 [ESTIMATING YIELD CURVE] [BOOTSTRAPPING HISTOGRAM] ..___....._._...__.._._._......._._..._....._......_........_.._....._.. .__..............._............._.._........._...... [COMPUTING CONFIDENCE INTERVALS] [WRITING OUTPUT]