File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/957ff7b6e1dec0e290d4d833deffd6/.command.log
Size
1.4 KB
Task
NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:BAM_RSEQC:RSEQC_JUNCTIONANNOTATION (1173_SDP_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d5/40045a44361175f0bb9f5734b3ba7b/1173_SDP_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/f1f0657d7edc3398bf9bef2a322224/1173_SDP_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0b/ca4d20e41802bc8c33ea65523f74cb/ref_annot.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/957ff7b6e1dec0e290d4d833deffd6/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1f/957ff7b6e1dec0e290d4d833deffd6/.command.run
==> STAGING COMPLETE (5 inputs)

null device 
          1 
null device 
          1 
total = 230472042
[W::hts_idx_load3] The index file is older than the data file: 1173_SDP_T1_RNA_SLD_01_A23T55JLT4_1.Aligned.sortedByCoord.out.bam.bai
Reading reference bed file:  ref_annot.bed  ...  Done
Load BAM file ...  Done

===================================================================
Total splicing  Events:	230472042
Known Splicing Events:	228745366
Partial Novel Splicing Events:	958119
Novel Splicing Events:	700620
Filtered Splicing Events:	67937

Total splicing  Junctions:	377525
Known Splicing Junctions:	247031
Partial Novel Splicing Junctions:	82538
Novel Splicing Junctions:	47956

===================================================================
Create BED file ...
Create Interact file ...