File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/1dba83037dee2be904f12b4d7d08fe/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:12:29
                             Started mapping on |	Jun 08 10:19:00
                                    Finished on |	Jun 08 11:04:25
       Mapping speed, Million of reads per hour |	391.25

                          Number of input reads |	296157936
                      Average input read length |	203
                                    UNIQUE READS:
                   Uniquely mapped reads number |	269768386
                        Uniquely mapped reads % |	91.09%
                          Average mapped length |	202.93
                       Number of splices: Total |	213519237
            Number of splices: Annotated (sjdb) |	210666490
                       Number of splices: GT/AG |	211131641
                       Number of splices: GC/AG |	1473177
                       Number of splices: AT/AC |	178125
               Number of splices: Non-canonical |	736294
                      Mismatch rate per base, % |	0.40%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.88
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.74
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	22581251
             % of reads mapped to multiple loci |	7.62%
        Number of reads mapped to too many loci |	655012
             % of reads mapped to too many loci |	0.22%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2547453
                 % of reads unmapped: too short |	0.86%
                Number of reads unmapped: other |	605834
                     % of reads unmapped: other |	0.20%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%