.command.err - Workdir - NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_TO_MULTIQC (1173_FM_T1_RNA_SLD_01_A23T55JLT4_1)

File Info

Filename: .command.err
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/4f832cd2ab81e8b8fe487af2acd7ef/.command.err
Size: 631 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:QC_WORKFLOW:SEQTOOL_TO_MULTIQC (1173_FM_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

Processing SeqTools file: 1173_FM_T1_RNA_SLD_01_A23T55JLT4_1_full_basic_stats.tsv
Warning: scipy not available. GC bias calculation will be simplified.
Successfully converted 1173_FM_T1_RNA_SLD_01_A23T55JLT4_1_full_basic_stats.tsv to 1173_FM_T1_RNA_SLD_01_A23T55JLT4_1_seqtool_mqc.tsv
  Samples: 1
  SeqTools (general stats) columns: 18
  Metrics: reads, frac_unmapped, frac_dupes, unique_reads, frac_reads_on_target, frac_pairs_on_target, frac_reads_off_target, frac_pairs_off_target, reads_on_target, pairs_on_target, reads_off_target, pairs_off_target, mean_depth, q50_depth, frac_bases_gt30x, frac_bases_gt100x, n_q30, gc_bias