File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/bc3d9b48fabf17f02256dc29545fcd/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 11:06:14
                             Started mapping on |	Jun 08 11:12:45
                                    Finished on |	Jun 08 11:54:56
       Mapping speed, Million of reads per hour |	419.36

                          Number of input reads |	294835613
                      Average input read length |	213
                                    UNIQUE READS:
                   Uniquely mapped reads number |	270877898
                        Uniquely mapped reads % |	91.87%
                          Average mapped length |	213.10
                       Number of splices: Total |	227515512
            Number of splices: Annotated (sjdb) |	224206689
                       Number of splices: GT/AG |	225019149
                       Number of splices: GC/AG |	1492055
                       Number of splices: AT/AC |	210924
               Number of splices: Non-canonical |	793384
                      Mismatch rate per base, % |	0.29%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.97
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.70
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	19353407
             % of reads mapped to multiple loci |	6.56%
        Number of reads mapped to too many loci |	924291
             % of reads mapped to too many loci |	0.31%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3251474
                 % of reads unmapped: too short |	1.10%
                Number of reads unmapped: other |	428543
                     % of reads unmapped: other |	0.15%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%