File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/bd487267683b3b3eb3dd9d83b4a705/.command.log
Size
107.9 KB
Attempt
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/d00f4df6bc79c4a7a1cc1c013a5102/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0f/e52dc9928879cb5534922a5a400d70/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/bd487267683b3b3eb3dd9d83b4a705/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e2/bd487267683b3b3eb3dd9d83b4a705/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/96/d00f4df6bc79c4a7a1cc1c013a5102/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz
==> STAGING COMPLETE (6 inputs)

-ctat genome lib [/tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir] validates.
CMD: mkdir -p /tmp/nxf.8oVrzBxDja/./_starF_checkpoints
CMD: mkdir -p /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary
-sample contains 261265943 rnaseq fragments
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes  --genome_lib_dir /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir  -J /tmp/nxf.8oVrzBxDja/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  -O /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 
-parsing fusion evidence: /tmp/nxf.8oVrzBxDja/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction
-building interval tree based on /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=33333.33/min 
[20000], rate=34285.71/min 
[30000], rate=34615.38/min 
[40000], rate=37500.00/min 
[50000], rate=35294.12/min 
[60000], rate=32727.27/min 
[70000], rate=33070.87/min 
[80000], rate=32214.77/min 
[90000], rate=32335.33/min 
[100000], rate=32258.06/min 
[110000], rate=31428.57/min 
[120000], rate=31304.35/min 
[130000], rate=31967.21/min 
[140000], rate=32558.14/min 
[150000], rate=33088.24/min 
[160000], rate=33566.43/min 
[170000], rate=34113.71/min 
[180000], rate=34726.69/min 
[190000], rate=35403.73/min 
[200000], rate=35502.96/min 
[210000], rate=36000.00/min 
[220000], rate=36065.57/min 
[230000], rate=36800.00/min 
[240000], rate=37696.34/min 
[250000], rate=38167.94/min 
[260000], rate=38613.86/min 
[270000], rate=36568.85/min 
[280000], rate=35820.90/min 
[290000], rate=35437.88/min 
[300000], rate=34816.25/min 
[310000], rate=34065.93/min 
[320000], rate=33743.41/min 
[330000], rate=32195.12/min 
[340000], rate=32025.12/min 
[350000], rate=31963.47/min 
[360000], rate=30945.56/min 
[370000], rate=30410.96/min 
[380000], rate=30522.09/min 
[390000], rate=30232.56/min 
[400000], rate=30075.19/min 
[410000], rate=29602.89/min 
[420000], rate=29681.98/min 
[430000], rate=29655.17/min 
[440000], rate=29629.63/min 
[450000], rate=29702.97/min 
[460000], rate=29837.84/min 
[470000], rate=29904.56/min 
[480000], rate=30094.04/min 
[490000], rate=30309.28/min 
[500000], rate=30456.85/min 
[510000], rate=30661.32/min 
[520000], rate=30860.53/min 
[530000], rate=30873.79/min 
[540000], rate=31064.24/min 
[550000], rate=31279.62/min 
[560000], rate=31519.70/min 
[570000], rate=31696.01/min 
[580000], rate=31521.74/min 
[590000], rate=31692.03/min 
[600000], rate=31914.89/min 
[610000], rate=32105.26/min 
[620000], rate=32013.77/min 
[630000], rate=31952.66/min 
[640000], rate=32107.02/min 
[650000], rate=32311.52/min 
[660000], rate=32379.39/min 
[670000], rate=32341.11/min 
[680000], rate=32535.89/min 
[690000], rate=32727.27/min 
[700000], rate=32941.18/min 
[710000], rate=33151.75/min 
[720000], rate=33333.33/min 
[730000], rate=33563.22/min 
[740000], rate=33789.95/min 
[750000], rate=33962.26/min 
[760000], rate=34029.85/min 
[770000], rate=33995.58/min 
[780000], rate=33863.97/min 
[790000], rate=33712.66/min 
[800000], rate=33542.98/min 
[810000], rate=33379.12/min 
[820000], rate=33265.72/min 
[830000], rate=33155.79/min 
[840000], rate=33027.52/min 
[850000], rate=32882.01/min 
[860000], rate=32866.24/min 
[870000], rate=32912.99/min 
[880000], rate=32958.80/min 
[890000], rate=33003.71/min 
[900000], rate=33088.24/min 
[910000], rate=33211.68/min 
[920000], rate=33393.83/min 
[930000], rate=33493.40/min 
[940000], rate=33651.55/min 
[950000], rate=33687.94/min 
[960000], rate=33644.86/min 
[970000], rate=33739.13/min 
[980000], rate=33949.19/min 
[990000], rate=33807.63/min 
[1000000], rate=33745.78/min 
[1010000], rate=33685.38/min 
[1020000], rate=33681.89/min 
[1030000], rate=33733.62/min 
[1040000], rate=33821.14/min 
[1050000], rate=33852.77/min 
[1060000], rate=33775.89/min 
[1070000], rate=33736.21/min 
[1080000], rate=33750.00/min 
[1090000], rate=33868.46/min 
[1100000], rate=33880.90/min 
[1110000], rate=34014.30/min 
[1120000], rate=34042.55/min 
[1130000], rate=34087.48/min 
[1140000], rate=34251.38/min 
[1150000], rate=34396.81/min 
[1160000], rate=34506.69/min 
[1170000], rate=34547.24/min 
[1180000], rate=34671.89/min 
[1190000], rate=34812.29/min 
[1200000], rate=34816.25/min 
[1210000], rate=34820.14/min 
[1220000], rate=34923.66/min 
[1230000], rate=34959.73/min 
[1240000], rate=35094.34/min 
[1250000], rate=35211.27/min 
[1260000], rate=35310.60/min 
[1270000], rate=35359.63/min 
[1280000], rate=35457.06/min 
[1290000], rate=35586.21/min 
[1300000], rate=35697.94/min 
[1310000], rate=35792.35/min 
[1320000], rate=36016.37/min 
[1330000], rate=36190.48/min 
[1340000], rate=36413.04/min 
[1350000], rate=36651.58/min 
[1360000], rate=36889.69/min 
[1370000], rate=37110.61/min 
[1380000], rate=37314.11/min 
[1390000], rate=37483.15/min 
[1400000], rate=37634.41/min 
[1410000], rate=37717.34/min 
[1420000], rate=37866.67/min 
[1430000], rate=37947.81/min 
[1440000], rate=38028.17/min 
[1450000], rate=38107.75/min 
[1460000], rate=38286.71/min 
[1470000], rate=38448.13/min 
[1480000], rate=38575.15/min 
[1490000], rate=38617.71/min 
[1500000], rate=38709.68/min 
[1510000], rate=38850.77/min 
[1520000], rate=38957.71/min 
[1530000], rate=39014.02/min 
[1540000], rate=39135.96/min 
[1550000], rate=39273.65/min 
[1560000], rate=39427.13/min 
[1570000], rate=39563.21/min 
[1580000], rate=39715.12/min 
[1590000], rate=39816.36/min 
[1600000], rate=39950.06/min 
[1610000], rate=40066.36/min 
[1620000], rate=40165.29/min 
[1630000], rate=40329.90/min 
[1640000], rate=40560.59/min 
[1650000], rate=40757.51/min 
[1660000], rate=40769.55/min 
[1670000], rate=40798.05/min 
[1680000], rate=40875.91/min 
[1690000], rate=40969.70/min 
[1700000], rate=41046.28/min 
[1710000], rate=41138.73/min 
[1720000], rate=41230.52/min 
[1730000], rate=41288.78/min 
[1740000], rate=41313.81/min 
[1750000], rate=41403.79/min 
[1760000], rate=41542.09/min 
[1770000], rate=41647.06/min 
[1780000], rate=41718.75/min 
[1790000], rate=41789.88/min 
[1800000], rate=41860.47/min 
[1810000], rate=41962.91/min 
[1820000], rate=42145.89/min 
[1830000], rate=42361.11/min 
[1840000], rate=42526.96/min 
[1850000], rate=42692.31/min 
[1860000], rate=42857.14/min 
[1870000], rate=42955.59/min 
[1880000], rate=43069.87/min 
[1890000], rate=43134.27/min 
[1900000], rate=43198.18/min 
[1910000], rate=43261.61/min 
[1920000], rate=43438.91/min 
[1930000], rate=43550.21/min 
[1940000], rate=43611.84/min 
[1950000], rate=43689.32/min 
[1960000], rate=43733.73/min 
[1970000], rate=43794.00/min 
[1980000], rate=43853.82/min 
[1990000], rate=43913.20/min 
[2000000], rate=43972.15/min 
[2010000], rate=44046.75/min 
[2020000], rate=44088.76/min 
[2030000], rate=44194.48/min 
[2040000], rate=44267.63/min 
[2050000], rate=44356.29/min 
[2060000], rate=44444.44/min 
[2070000], rate=44612.07/min 
[2080000], rate=44779.33/min 
[2090000], rate=44978.48/min 
[2100000], rate=45177.48/min 
[2110000], rate=45376.34/min 
[2120000], rate=45575.06/min 
[2130000], rate=45757.25/min 
[2140000], rate=45939.18/min 
[2150000], rate=46087.89/min 
[2160000], rate=46203.21/min 
[2170000], rate=46301.56/min 
[2180000], rate=46366.54/min 
[2190000], rate=46431.10/min 
[2200000], rate=46462.51/min 
[2210000], rate=46640.87/min 
[2220000], rate=46720.45/min 
[2230000], rate=46734.19/min 
[2240000], rate=46780.37/min 
[2250000], rate=46826.22/min 
[2260000], rate=46936.66/min 
[2270000], rate=47046.63/min 
[2280000], rate=47091.22/min 
[2290000], rate=47167.87/min 
[2300000], rate=47276.46/min 
[2310000], rate=47352.24/min 
[2320000], rate=47443.76/min 
[2330000], rate=47534.85/min 
[2340000], rate=47593.22/min 
[2350000], rate=47635.14/min 
[2360000], rate=47741.07/min 
[2370000], rate=47830.47/min 
[2380000], rate=47919.46/min 
[2390000], rate=48072.41/min 
[2400000], rate=48257.37/min 
[2410000], rate=48442.21/min 
[2420000], rate=48626.93/min 
[2430000], rate=48811.52/min 
[2440000], rate=48995.98/min 
[2450000], rate=49081.80/min 
[2460000], rate=49118.14/min 
[2470000], rate=49186.86/min 
[2480000], rate=49222.63/min 
[2490000], rate=49258.16/min 
[2500000], rate=49309.66/min 
[2510000], rate=49344.69/min 
[2520000], rate=49395.62/min 
[2530000], rate=49430.15/min 
[2540000], rate=49464.46/min 
[2550000], rate=49530.59/min 
[2560000], rate=49596.38/min 
[2570000], rate=49661.84/min 
[2580000], rate=49710.98/min 
[2590000], rate=49759.85/min 
[2600000], rate=49760.77/min 
[2610000], rate=49872.61/min 
[2620000], rate=50047.76/min 
[2630000], rate=50174.88/min 
[2640000], rate=50301.68/min 
[2650000], rate=50412.18/min 
[2660000], rate=50474.38/min 
[2670000], rate=50552.22/min 
[2680000], rate=50597.86/min 
[2690000], rate=50627.35/min 
[2700000], rate=50656.66/min 
[2710000], rate=50780.76/min 
[2720000], rate=50856.96/min 
[2730000], rate=50917.00/min 
[2740000], rate=50960.94/min 
[2750000], rate=51020.41/min 
[2760000], rate=51142.68/min 
[2770000], rate=51233.05/min 
[2780000], rate=51323.08/min 
[2790000], rate=51428.57/min 
[2800000], rate=51517.94/min 
[2810000], rate=51622.78/min 
[2820000], rate=51695.69/min 
[2830000], rate=51768.29/min 
[2840000], rate=51824.82/min 
[2850000], rate=51896.81/min 
[2860000], rate=51984.25/min 
[2870000], rate=52055.62/min 
[2880000], rate=52158.16/min 
[2890000], rate=52307.69/min 
[2900000], rate=52472.86/min 
[2910000], rate=52606.21/min 
[2920000], rate=52644.23/min 
[2930000], rate=52682.05/min 
[2940000], rate=52735.43/min 
[2950000], rate=52772.81/min 
[2960000], rate=52825.70/min 
[2970000], rate=52878.34/min 
[2980000], rate=52946.40/min 
[2990000], rate=53014.18/min 
[3000000], rate=53097.35/min 
[3010000], rate=53164.56/min 
[3020000], rate=53247.13/min 
[3030000], rate=53329.42/min 
[3040000], rate=53395.78/min 
[3050000], rate=53493.13/min 
[3060000], rate=53590.19/min 
[3070000], rate=53655.69/min 
[3080000], rate=53689.72/min 
[3090000], rate=53723.56/min 
[3100000], rate=53741.69/min 
[3110000], rate=53775.22/min 
[3120000], rate=53808.57/min 
[3130000], rate=53841.74/min 
[3140000], rate=53874.75/min 
[3150000], rate=53907.59/min 
[3160000], rate=53955.61/min 
[3170000], rate=54003.41/min 
[3180000], rate=54050.99/min 
[3190000], rate=54113.66/min 
[3200000], rate=54176.07/min 
[3210000], rate=54222.97/min 
[3220000], rate=54254.42/min 
[3230000], rate=54300.92/min 
[3240000], rate=54362.42/min 
[3250000], rate=54423.67/min 
[3260000], rate=54499.86/min 
[3270000], rate=54575.80/min 
[3280000], rate=54636.31/min 
[3290000], rate=54696.59/min 
[3300000], rate=54756.64/min 
[3310000], rate=54831.58/min 
[3320000], rate=54906.28/min 
[3330000], rate=54980.74/min 
[3340000], rate=55039.82/min 
[3350000], rate=55128.91/min 
[3360000], rate=55202.63/min 
[3370000], rate=55276.11/min 
[3380000], rate=55228.76/min 
[3390000], rate=55002.70/min 
[3400000], rate=54794.52/min 
[3410000], rate=54647.44/min 
[3420000], rate=54516.47/min 
[3430000], rate=54372.52/min 
[3440000], rate=54301.50/min -building interval tree based on /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.07 min).
-mapping reads to genes

[10000], rate=85714.29/min 
[20000], rate=100000.00/min 
[30000], rate=100000.00/min 
[40000], rate=100000.00/min 
[50000], rate=103448.28/min 
[60000], rate=102857.14/min 
[70000], rate=102439.02/min 
[80000], rate=106666.67/min 
[90000], rate=108000.00/min 
[100000], rate=105263.16/min 
[110000], rate=103125.00/min 
[120000], rate=101408.45/min 
[130000], rate=104000.00/min 
[140000], rate=110526.32/min 
[150000], rate=116883.12/min 
[160000], rate=121518.99/min 
[170000], rate=125925.93/min 
[180000], rate=128571.43/min 
[190000], rate=129545.45/min 
[200000], rate=130434.78/min 
[210000], rate=128571.43/min 
[220000], rate=114782.61/min 
[230000], rate=110400.00/min 
[240000], rate=109923.66/min 
[250000], rate=102739.73/min 
[260000], rate=98113.21/min 
[270000], rate=95857.99/min 
[280000], rate=92817.68/min 
[290000], rate=92553.19/min 
[300000], rate=91836.73/min 
[310000], rate=89855.07/min 
[320000], rate=88073.39/min 
[330000], rate=87224.67/min 
[340000], rate=87553.65/min 
[350000], rate=87500.00/min 
[360000], rate=86400.00/min 
[370000], rate=85057.47/min 
[380000], rate=85393.26/min 
[390000], rate=86029.41/min 
[400000], rate=86642.60/min 
[410000], rate=87544.48/min 
[420000], rate=89045.94/min 
[430000], rate=91166.08/min 
[440000], rate=93286.22/min 
[450000], rate=95070.42/min 
[460000], rate=96503.50/min 
[470000], rate=95270.27/min 
[480000], rate=93506.49/min 
[490000], rate=93037.97/min 
[500000], rate=92307.69/min 
[510000], rate=91616.77/min 
[520000], rate=90173.41/min 
[530000], rate=89577.46/min 
[540000], rate=88767.12/min 
[550000], rate=88471.85/min 
[560000], rate=88654.35/min 
[570000], rate=88601.04/min 
[580000], rate=88775.51/min 
[590000], rate=88944.72/min 
[600000], rate=87804.88/min 
[610000], rate=85514.02/min 
[620000], rate=85912.24/min 
[630000], rate=86896.55/min 
[640000], rate=87671.23/min 
[650000], rate=87837.84/min 
[660000], rate=88392.86/min 
[670000], rate=87581.70/min 
[680000], rate=87179.49/min 
[690000], rate=86792.45/min 
[700000], rate=85889.57/min 
[710000], rate=85714.29/min 
[720000], rate=85714.29/min 
[730000], rate=86220.47/min 
[740000], rate=86213.59/min 
[750000], rate=86206.90/min 
[760000], rate=86037.74/min 
[770000], rate=86516.85/min 
[780000], rate=86988.85/min 
[790000], rate=87292.82/min 
[800000], rate=87272.73/min 
[810000], rate=86940.97/min 
[820000], rate=86772.49/min 
[830000], rate=87062.94/min 
[840000], rate=87197.23/min 
[850000], rate=87328.77/min 
[860000], rate=87309.64/min 
[870000], rate=87583.89/min 
[880000], rate=88000.00/min 
[890000], rate=88264.46/min 
[900000], rate=88962.11/min 
[910000], rate=89802.63/min 
[920000], rate=90789.47/min 
[930000], rate=91776.32/min 
[940000], rate=92610.84/min 
[950000], rate=92532.47/min 
[960000], rate=92307.69/min 
[970000], rate=91365.78/min 
[980000], rate=91021.67/min 
[990000], rate=90825.69/min 
[1000000], rate=90361.45/min 
[1010000], rate=89512.56/min 
[1020000], rate=88695.65/min 
[1030000], rate=88159.77/min 
[1040000], rate=87887.32/min 
[1050000], rate=87988.83/min 
[1060000], rate=88088.64/min 
[1070000], rate=88186.81/min 
[1080000], rate=88163.27/min 
[1090000], rate=88140.16/min 
[1100000], rate=88353.41/min 
[1110000], rate=89037.43/min 
[1120000], rate=89719.63/min 
[1130000], rate=90159.57/min 
[1140000], rate=90716.18/min 
[1150000], rate=91149.27/min 
[1160000], rate=91458.61/min 
[1170000], rate=91764.71/min 
[1180000], rate=91709.84/min 
[1190000], rate=91071.43/min 
[1200000], rate=90794.45/min 
[1210000], rate=90977.44/min 
[1220000], rate=91158.16/min 
[1230000], rate=91223.73/min 
[1240000], rate=91064.87/min 
[1250000], rate=90689.24/min 
[1260000], rate=90756.30/min 
[1270000], rate=91039.43/min 
[1280000], rate=91211.40/min 
[1290000], rate=91058.82/min 
[1300000], rate=91015.17/min 
[1310000], rate=90972.22/min 
[1320000], rate=90617.85/min 
[1330000], rate=90476.19/min 
[1340000], rate=90235.69/min 
[1350000], rate=89800.44/min 
[1360000], rate=89375.68/min 
[1370000], rate=89347.83/min 
[1380000], rate=89513.51/min 
[1390000], rate=90162.16/min 
[1400000], rate=90712.74/min 
[1410000], rate=91163.79/min 
[1420000], rate=91025.64/min 
[1430000], rate=90793.65/min 
[1440000], rate=90376.57/min 
[1450000], rate=89783.28/min 
[1460000], rate=89662.23/min 
[1470000], rate=89180.99/min 
[1480000], rate=88800.00/min 
[1490000], rate=88602.58/min 
[1500000], rate=88321.88/min 
[1510000], rate=88304.09/min 
[1520000], rate=88286.54/min 
[1530000], rate=88015.34/min 
[1540000], rate=87582.94/min 
[1550000], rate=86753.73/min 
[1560000], rate=86426.59/min 
[1570000], rate=86740.33/min 
[1580000], rate=87212.51/min 
[1590000], rate=87683.82/min 
[1600000], rate=88073.39/min 
[1610000], rate=88461.54/min 
[1620000], rate=88686.13/min 
[1630000], rate=88828.34/min 
[1640000], rate=88888.89/min 
[1650000], rate=88630.26/min 
[1660000], rate=88141.59/min 
[1670000], rate=87894.74/min 
[1680000], rate=88111.89/min 
[1690000], rate=88173.91/min 
[1700000], rate=88082.90/min 
[1710000], rate=87767.32/min 
[1720000], rate=87755.10/min 
[1730000], rate=87966.10/min 
[1740000], rate=87878.79/min 
[1750000], rate=87646.08/min 
[1760000], rate=87417.22/min 
[1770000], rate=87192.12/min 
[1780000], rate=86970.68/min 
[1790000], rate=87034.04/min 
[1800000], rate=87096.77/min 
[1810000], rate=86810.55/min 
[1820000], rate=86873.51/min 
[1830000], rate=87004.75/min 
[1840000], rate=87203.79/min 
[1850000], rate=87608.52/min 
[1860000], rate=88082.08/min 
[1870000], rate=88416.08/min 
[1880000], rate=87918.94/min 
[1890000], rate=87500.00/min 
[1900000], rate=85521.38/min 
[1910000], rate=81857.14/min 
[1920000], rate=77263.58/min 
[1930000], rate=73337.56/min 
[1940000], rate=70545.45/min 
[1950000], rate=68421.05/min 
[1960000], rate=66515.84/min 
[1970000], rate=64414.17/min 
[1980000], rate=62329.49/min 
[1990000], rate=60425.10/min 
[2000000], rate=58852.38/min 
[2010000], rate=57675.75/min 
[2020000], rate=56609.06/min 
[2030000], rate=55238.10/min 
[2040000], rate=54159.29/min 
[2050000], rate=52857.76/min 
[2060000], rate=51845.64/min 
[2070000], rate=51006.16/min 
[2080000], rate=50302.30/min 
[2090000], rate=49447.95/min 
[2100000], rate=48611.11/min 
[2110000], rate=48063.78/min 
[2120000], rate=47551.40/min 
[2130000], rate=46968.03/min 
[2140000], rate=46488.05/min 
[2150000], rate=45891.14/min 
[2160000], rate=45314.69/min 
[2170000], rate=44650.21/min 
[2180000], rate=44234.02/min 
[2190000], rate=43814.60/min 
[2200000], rate=43406.77/min 
[2210000], rate=42982.17/min 
[2220000], rate=42651.30/min 
[2230000], rate=42301.61/min 
[2240000], rate=42013.13/min 
[2250000], rate=41653.81/min 
[2260000], rate=41354.07/min 
[2270000], rate=41085.97/min 
[2280000], rate=40848.01/min 
[2290000], rate=40614.84/min 
[2300000], rate=40457.34/min 
[2310000], rate=40325.87/min 
[2320000], rate=40207.97/min 
[2330000], rate=40114.78/min 
[2340000], rate=40045.64/min 
[2350000], rate=39977.32/min 
[2360000], rate=39932.32/min 
[2370000], rate=39820.78/min 
[2380000], rate=39721.84/min 
[2390000], rate=39624.21/min 
[2400000], rate=39538.71/min 
[2410000], rate=39475.84/min 
[2420000], rate=39381.61/min 
[2430000], rate=39309.79/min 
[2440000], rate=39249.33/min 
[2450000], rate=39158.23/min 
[2460000], rate=39099.34/min 
[2470000], rate=39051.38/min 
[2480000], rate=38993.71/min 
[2490000], rate=38936.67/min 
[2500000], rate=38890.33/min 
[2510000], rate=38854.49/min 
[2520000], rate=38799.08/min 
[2530000], rate=38754.15/min 
[2540000], rate=38719.51/min 
[2550000], rate=38675.43/min 
[2560000], rate=38641.51/min 
[2570000], rate=38617.58/min 
[2580000], rate=38584.25/min 
[2590000], rate=38560.79/min 
[2600000], rate=38518.52/min 
[2610000], rate=38495.58/min 
[2620000], rate=38472.83/min 
[2630000], rate=38450.29/min 
[2640000], rate=38418.63/min 
[2650000], rate=38405.80/min 
[2660000], rate=38374.61/min 
[2670000], rate=38362.07/min 
[2680000], rate=38358.78/min 
[2690000], rate=38355.51/min 
[2700000], rate=38361.35/min 
[27100-building interval tree based on /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.10 min).
-mapping reads to genes

[10000], rate=18750.00/min 
[20000], rate=20689.66/min 
[30000], rate=20454.55/min 
[40000], rate=21428.57/min 
[50000], rate=21582.73/min 
[60000], rate=22500.00/min 
[70000], rate=22459.89/min 
[80000], rate=21719.46/min 
[90000], rate=21774.19/min 
[100000], rate=22471.91/min 
[110000], rate=22297.30/min 
[120000], rate=22929.94/min 
[130000], rate=23564.95/min 
[140000], rate=24489.80/min 
[150000], rate=25069.64/min 
[160000], rate=25464.19/min 
[170000], rate=25692.70/min 
[180000], rate=25653.21/min 
[190000], rate=25850.34/min 
[200000], rate=26143.79/min 
[210000], rate=26359.83/min 
[220000], rate=26666.67/min 
[230000], rate=26744.19/min 
[240000], rate=26716.14/min 
[250000], rate=26929.98/min 
[260000], rate=27130.43/min 
[270000], rate=27411.17/min 
[280000], rate=27814.57/min 
[290000], rate=28246.75/min 
[300000], rate=28708.13/min 
[310000], rate=29153.61/min 
[320000], rate=29090.91/min 
[330000], rate=29074.89/min 
[340000], rate=29142.86/min 
[350000], rate=29619.18/min 
[360000], rate=29793.10/min 
[370000], rate=30204.08/min 
[380000], rate=30686.41/min 
[390000], rate=30789.47/min 
[400000], rate=30379.75/min 
[410000], rate=30258.30/min 
[420000], rate=30071.60/min 
[430000], rate=29861.11/min 
[440000], rate=29563.27/min 
[450000], rate=29540.48/min 
[460000], rate=29487.18/min 
[470000], rate=29253.11/min 
[480000], rate=29327.90/min 
[490000], rate=29458.92/min 
[500000], rate=29585.80/min 
[510000], rate=29824.56/min 
[520000], rate=30115.83/min 
[530000], rate=30285.71/min 
[540000], rate=30365.51/min 
[550000], rate=30470.91/min 
[560000], rate=30490.02/min 
[570000], rate=30454.14/min 
[580000], rate=30579.96/min 
[590000], rate=30702.52/min 
[600000], rate=30848.33/min 
[610000], rate=30782.17/min 
[620000], rate=30974.19/min 
[630000], rate=31188.12/min 
[640000], rate=31398.20/min 
[650000], rate=31502.42/min 
[660000], rate=31756.21/min 
[670000], rate=31955.48/min 
[680000], rate=32050.27/min 
[690000], rate=32068.16/min 
[700000], rate=31987.81/min 
[710000], rate=31934.03/min 
[720000], rate=31788.08/min 
[730000], rate=31174.38/min 
[740000], rate=30494.51/min 
[750000], rate=29940.12/min 
[760000], rate=29400.39/min 
[770000], rate=29001.88/min 
[780000], rate=28711.66/min 
[790000], rate=28588.66/min 
[800000], rate=28486.65/min 
[810000], rate=28255.81/min 
[820000], rate=28243.40/min 
[830000], rate=28056.34/min 
[840000], rate=27953.41/min 
[850000], rate=27762.66/min 
[860000], rate=27741.94/min 
[870000], rate=27648.31/min 
[880000], rate=27543.04/min 
[890000], rate=27511.59/min 
[900000], rate=27411.17/min 
[910000], rate=27464.79/min 
[920000], rate=27367.38/min 
[930000], rate=27433.63/min 
[940000], rate=27445.26/min 
[950000], rate=27351.25/min 
[960000], rate=27337.45/min 
[970000], rate=27336.78/min 
[980000], rate=27348.84/min 
[990000], rate=27500.00/min 
[1000000], rate=27573.53/min 
[1010000], rate=27620.78/min 
[1020000], rate=27579.99/min 
[1030000], rate=27626.29/min 
[1040000], rate=27745.66/min 
[1050000], rate=27839.15/min 
[1060000], rate=27882.51/min 
[1070000], rate=27949.50/min 
[1080000], rate=28064.10/min 
[1090000], rate=28177.51/min 
[1100000], rate=28241.34/min 
[1110000], rate=28304.29/min 
[1120000], rate=28390.37/min 
[1130000], rate=28297.16/min 
[1140000], rate=28276.15/min 
[1150000], rate=28255.53/min 
[1160000], rate=28338.76/min 
[1170000], rate=28295.04/min 
[1180000], rate=28286.06/min 
[1190000], rate=28288.43/min 
[1200000], rate=28313.02/min 
[1210000], rate=28315.13/min 
[1220000], rate=28273.46/min 
[1230000], rate=28254.21/min 
[1240000], rate=28235.29/min 
[1250000], rate=28216.70/min 
[1260000], rate=28230.02/min 
[1270000], rate=28222.22/min 
[1280000], rate=28245.68/min 
[1290000], rate=28258.49/min 
[1300000], rate=28291.62/min 
[1310000], rate=28324.32/min 
[1320000], rate=28326.18/min 
[1330000], rate=28338.07/min 
[1340000], rate=28389.83/min 
[1350000], rate=28401.12/min 
[1360000], rate=28461.81/min 
[1370000], rate=28521.86/min 
[1380000], rate=28551.72/min 
[1390000], rate=28591.02/min 
[1400000], rate=28639.62/min 
[1410000], rate=28697.42/min 
[1420000], rate=28754.64/min 
[1430000], rate=28811.28/min 
[1440000], rate=28896.32/min 
[1450000], rate=28990.34/min 
[1460000], rate=29074.01/min 
[1470000], rate=29166.67/min 
[1480000], rate=29268.29/min 
[1490000], rate=29369.25/min 
[1500000], rate=29469.55/min 
[1510000], rate=29598.17/min 
[1520000], rate=29716.52/min 
[1530000], rate=29834.25/min 
[1540000], rate=29941.67/min 
[1550000], rate=30048.47/min 
[1560000], rate=30164.36/min 
[1570000], rate=30279.65/min 
[1580000], rate=30413.86/min 
[1590000], rate=30537.77/min 
[1600000], rate=30622.01/min 
[1610000], rate=30705.66/min 
[1620000], rate=30662.46/min 
[1630000], rate=30687.17/min 
[1640000], rate=30702.03/min 
[1650000], rate=30621.71/min 
[1660000], rate=30580.29/min 
[1670000], rate=30558.10/min 
[1680000], rate=30508.47/min 
[1690000], rate=30496.24/min 
[1700000], rate=30475.05/min 
[1710000], rate=30445.10/min 
[1720000], rate=30451.46/min 
[1730000], rate=30475.63/min 
[1740000], rate=30490.65/min 
[1750000], rate=30496.66/min 
[1760000], rate=30537.88/min 
[1770000], rate=30543.57/min 
[1780000], rate=30557.94/min 
[1790000], rate=30572.16/min 
[1800000], rate=30586.24/min 
[1810000], rate=30617.42/min 
[1820000], rate=30682.78/min 
[1830000], rate=30756.30/min 
[1840000], rate=30769.23/min 
[1850000], rate=30799.11/min 
[1860000], rate=30845.77/min 
[1870000], rate=30892.07/min 
[1880000], rate=30938.01/min 
[1890000], rate=30992.07/min 
[1900000], rate=31028.85/min 
[1910000], rate=31082.18/min 
[1920000], rate=31109.91/min 
[1930000], rate=31137.40/min 
[1940000], rate=31198.07/min 
[1950000], rate=31250.00/min 
[1960000], rate=31284.92/min 
[1970000], rate=31319.55/min 
[1980000], rate=31362.20/min 
[1990000], rate=31396.27/min 
[2000000], rate=31438.30/min 
[2010000], rate=31488.25/min 
[2020000], rate=31554.28/min 
[2030000], rate=31595.33/min 
[2040000], rate=31652.44/min 
[2050000], rate=31701.03/min 
[2060000], rate=31757.45/min 
[2070000], rate=31821.68/min 
[2080000], rate=31885.54/min 
[2090000], rate=31957.19/min 
[2100000], rate=32020.33/min 
[2110000], rate=32083.12/min 
[2120000], rate=32145.56/min 
[2130000], rate=32223.90/min 
[2140000], rate=32285.64/min 
[2150000], rate=32355.15/min 
[2160000], rate=32432.43/min 
[2170000], rate=32509.36/min 
[2180000], rate=32577.83/min 
[2190000], rate=32662.19/min 
[2200000], rate=32738.10/min 
[2210000], rate=32813.66/min 
[2220000], rate=32888.89/min 
[2230000], rate=32963.78/min 
[2240000], rate=33038.35/min 
[2250000], rate=33120.71/min 
[2260000], rate=33202.74/min 
[2270000], rate=33292.59/min 
[2280000], rate=33382.14/min 
[2290000], rate=33471.38/min 
[2300000], rate=33552.15/min 
[2310000], rate=33657.12/min 
[2320000], rate=33745.45/min 
[2330000], rate=33833.49/min 
[2340000], rate=33921.24/min 
[2350000], rate=34016.89/min 
[2360000], rate=34112.26/min 
[2370000], rate=34190.91/min 
[2380000], rate=34179.03/min 
[2390000], rate=34167.26/min 
[2400000], rate=34179.92/min 
[2410000], rate=34160.17/min 
[2420000], rate=34172.75/min 
[2430000], rate=34185.23/min 
[2440000], rate=34197.62/min 
[2450000], rate=34241.79/min 
[2460000], rate=34285.71/min 
[2470000], rate=34337.35/min 
[2480000], rate=34396.67/min 
[2490000], rate=34439.83/min 
[2500000], rate=34490.69/min 
[2510000], rate=34549.21/min 
[2520000], rate=34623.31/min 
[2530000], rate=34697.14/min 
[2540000], rate=34778.64/min 
[2550000], rate=34851.94/min 
[2560000], rate=34917.03/min 
[2570000], rate=34997.73/min 
[2580000], rate=35078.18/min 
[2590000], rate=35150.42/min 
[2600000], rate=35246.27/min 
[2610000], rate=35325.96/min 
[2620000], rate=35397.43/min 
[2630000], rate=35484.60/min 
[2640000], rate=35563.54/min 
[2650000], rate=35658.22/min 
[2660000], rate=35736.68/min 
[2670000], rate=35830.91/min 
[2680000], rate=35916.91/min 
[2690000], rate=36002.68/min 
[2700000], rate=36096.26/min 
[2710000], rate=36181.58/min 
-building interval tree based on /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu
-done building interval tree (0.08 min).
-mapping reads to genes

[10000], rate=16666.67/min 
[20000], rate=16438.36/min 
[30000], rate=18367.35/min 
[40000], rate=19512.20/min 
[50000], rate=19354.84/min 
[60000], rate=18274.11/min 
[70000], rate=18666.67/min 
[80000], rate=19277.11/min 
[90000], rate=19852.94/min 
[100000], rate=20477.82/min 
[110000], rate=20560.75/min 
[120000], rate=20930.23/min 
[130000], rate=21138.21/min 
[140000], rate=21538.46/min 
[150000], rate=21791.77/min 
[160000], rate=22170.90/min 
[170000], rate=22666.67/min 
[180000], rate=22978.72/min 
[190000], rate=23312.88/min 
[200000], rate=23668.64/min 
[210000], rate=23773.58/min 
[220000], rate=24000.00/min 
[230000], rate=24210.53/min 
[240000], rate=24573.38/min 
[250000], rate=24834.44/min 
[260000], rate=24801.27/min 
[270000], rate=24923.08/min 
[280000], rate=24925.82/min 
[290000], rate=25253.99/min 
[300000], rate=25459.69/min 
[310000], rate=25905.29/min 
[320000], rate=26337.45/min 
[330000], rate=26400.00/min 
[340000], rate=26493.51/min 
[350000], rate=26957.64/min 
[360000], rate=27376.43/min 
[370000], rate=27784.73/min 
[380000], rate=28217.82/min 
[390000], rate=28641.37/min 
[400000], rate=29055.69/min 
[410000], rate=29496.40/min 
[420000], rate=29787.23/min 
[430000], rate=29152.54/min 
[440000], rate=28789.53/min 
[450000], rate=28095.73/min 
[460000], rate=27822.58/min 
[470000], rate=27701.38/min 
[480000], rate=27454.72/min 
[490000], rate=27071.82/min 
[500000], rate=27002.70/min 
[510000], rate=26771.65/min 
[520000], rate=26804.12/min 
[530000], rate=26790.23/min 
[540000], rate=26535.63/min 
[550000], rate=26421.14/min 
[560000], rate=26415.09/min 
[570000], rate=26409.27/min 
[580000], rate=26463.88/min 
[590000], rate=26497.01/min 
[600000], rate=26392.96/min 
[610000], rate=26105.56/min 
[620000], rate=25708.36/min 
[630000], rate=25386.17/min 
[640000], rate=25098.04/min 
[650000], rate=24967.99/min 
[660000], rate=24968.47/min 
[670000], rate=25015.56/min 
[680000], rate=24908.42/min 
[690000], rate=24849.94/min 
[700000], rate=24985.13/min 
[710000], rate=25000.00/min 
[720000], rate=25058.00/min 
[730000], rate=25057.21/min 
[740000], rate=25184.34/min 
[750000], rate=25280.90/min 
[760000], rate=25291.18/min 
[770000], rate=25384.62/min 
[780000], rate=25517.99/min 
[790000], rate=25525.04/min 
[800000], rate=25572.72/min 
[810000], rate=25659.98/min 
[820000], rate=25772.66/min 
[830000], rate=25870.13/min 
[840000], rate=25979.38/min 
[850000], rate=26046.99/min 
[860000], rate=26139.82/min 
[870000], rate=26257.55/min 
[880000], rate=26334.16/min 
[890000], rate=26501.24/min 
[900000], rate=26679.84/min 
[910000], rate=26725.40/min 
[920000], rate=26705.37/min 
[930000], rate=26736.94/min 
[940000], rate=26742.53/min 
[950000], rate=26748.01/min 
[960000], rate=26716.14/min 
[970000], rate=26832.64/min 
[980000], rate=26861.58/min 
[990000], rate=26890.00/min 
[1000000], rate=26990.55/min 
[1010000], rate=27114.09/min 
[1020000], rate=27212.09/min 
[1030000], rate=27296.82/min 
[1040000], rate=27380.43/min 
[1050000], rate=27522.94/min 
[1060000], rate=27616.15/min 
[1070000], rate=27744.17/min 
[1080000], rate=27894.96/min 
[1090000], rate=27889.13/min 
[1100000], rate=27824.62/min 
[1110000], rate=27842.81/min 
[1120000], rate=27791.56/min 
[1130000], rate=27786.89/min 
[1140000], rate=27838.83/min 
[1150000], rate=27901.33/min 
[1160000], rate=27974.28/min 
[1170000], rate=28023.95/min 
[1180000], rate=28072.96/min 
[1190000], rate=28143.48/min 
[1200000], rate=28169.01/min 
[1210000], rate=28227.06/min 
[1220000], rate=28306.26/min 
[1230000], rate=28395.54/min 
[1240000], rate=28462.13/min 
[1250000], rate=28538.81/min 
[1260000], rate=28625.52/min 
[1270000], rate=28711.38/min 
[1280000], rate=28818.01/min 
[1290000], rate=28934.58/min 
[1300000], rate=29028.66/min 
[1310000], rate=29143.49/min 
[1320000], rate=29268.29/min 
[1330000], rate=29381.44/min 
[1340000], rate=29493.76/min 
[1350000], rate=29637.76/min 
[1360000], rate=29770.16/min 
[1370000], rate=29815.02/min 
[1380000], rate=29794.89/min 
[1390000], rate=29785.71/min 
[1400000], rate=29808.37/min 
[1410000], rate=29820.23/min 
[1420000], rate=29769.39/min 
[1430000], rate=29709.14/min 
[1440000], rate=29619.47/min 
[1450000], rate=29581.77/min 
[1460000], rate=29554.66/min 
[1470000], rate=29587.39/min 
[1480000], rate=29590.14/min 
[1490000], rate=29612.45/min 
[1500000], rate=29654.04/min 
[1510000], rate=29685.45/min 
[1520000], rate=29716.52/min 
[1530000], rate=29776.19/min 
[1540000], rate=29816.07/min 
[1550000], rate=29884.32/min 
[1560000], rate=29942.42/min 
[1570000], rate=29980.90/min 
[1580000], rate=30028.51/min 
[1590000], rate=30075.66/min 
[1600000], rate=30112.92/min 
[1610000], rate=30168.64/min 
[1620000], rate=30223.88/min 
[1630000], rate=30288.01/min 
[1640000], rate=30361.00/min 
[1650000], rate=30433.45/min 
[1660000], rate=30524.06/min 
[1670000], rate=30614.12/min 
[1680000], rate=30703.62/min 
[1690000], rate=30783.24/min 
[1700000], rate=30890.37/min 
[1710000], rate=30987.62/min 
[1720000], rate=31028.26/min 
[1730000], rate=30975.83/min 
[1740000], rate=30942.50/min 
[1750000], rate=30927.84/min 
[1760000], rate=30877.19/min 
[1770000], rate=30845.19/min 
[1780000], rate=30858.13/min 
[1790000], rate=30844.34/min 
[1800000], rate=30839.52/min 
[1810000], rate=30826.00/min 
[1820000], rate=30830.04/min 
[1830000], rate=30842.70/min 
[1840000], rate=30863.85/min 
[1850000], rate=30876.22/min 
[1860000], rate=30922.69/min 
[1870000], rate=30934.66/min 
[1880000], rate=30963.49/min 
[1890000], rate=30975.14/min 
[1900000], rate=30986.68/min 
[1910000], rate=31014.88/min 
[1920000], rate=31042.85/min 
[1930000], rate=31053.90/min 
[1940000], rate=31081.44/min 
[1950000], rate=31117.02/min 
[1960000], rate=31177.09/min 
[1970000], rate=31187.34/min 
[1980000], rate=31197.48/min 
[1990000], rate=31232.02/min 
[2000000], rate=31250.00/min 
[2010000], rate=31316.54/min 
[2020000], rate=31342.13/min 
[2030000], rate=31375.58/min 
[2040000], rate=31416.84/min 
[2050000], rate=31449.76/min 
[2060000], rate=31482.42/min 
[2070000], rate=31538.85/min 
[2080000], rate=31578.95/min 
[2090000], rate=31642.69/min 
[2100000], rate=31690.14/min 
[2110000], rate=31721.37/min 
[2120000], rate=31760.30/min 
[2130000], rate=31822.71/min 
[2140000], rate=31876.86/min 
[2150000], rate=31938.60/min 
[2160000], rate=31992.10/min 
[2170000], rate=32068.97/min 
[2180000], rate=32137.59/min 
[2190000], rate=32205.88/min 
[2200000], rate=32265.95/min 
[2210000], rate=32333.58/min 
[2220000], rate=32400.88/min 
[2230000], rate=32475.73/min 
[2240000], rate=32550.25/min 
[2250000], rate=32632.34/min 
[2260000], rate=32714.11/min 
[2270000], rate=32787.67/min 
[2280000], rate=32876.71/min 
[2290000], rate=32973.36/min 
[2300000], rate=33053.89/min 
[2310000], rate=33149.96/min 
[2320000], rate=33253.70/min 
[2330000], rate=33349.24/min 
[2340000], rate=33444.50/min 
[2350000], rate=33547.47/min 
[2360000], rate=33626.22/min 
[2370000], rate=33545.65/min 
[2380000], rate=33450.46/min 
[2390000], rate=33411.00/min 
[2400000], rate=33356.50/min 
[2410000], rate=33310.30/min 
[2420000], rate=33279.85/min 
[2430000], rate=33302.88/min 
[2440000], rate=33333.33/min 
[2450000], rate=33356.02/min 
[2460000], rate=33378.56/min 
[2470000], rate=33400.95/min 
[2480000], rate=33400.67/min 
[2490000], rate=33422.82/min 
[2500000], rate=33459.74/min 
[2510000], rate=33503.89/min 
[2520000], rate=33532.93/min 
[2530000], rate=33576.64/min 
[2540000], rate=33627.54/min 
[2550000], rate=33670.77/min 
[2560000], rate=33728.59/min 
[2570000], rate=33778.75/min 
[2580000], rate=33836.07/min 
[2590000], rate=33900.52/min 
[2600000], rate=33964.73/min 
[2610000], rate=34028.68/min 
[2620000], rate=34085.00/min 
[2630000], rate=34148.45/min 
[2640000], rate=34204.28/min 
[2650000], rate=34274.63/min 
[2660000], rate=34337.35/min 
[2670000], rate=34407.22/min 
[2680000], rate=34484.24/min 
[2690000], rate=34546.23/min 
[2700000], rate=34615.38/min 
[2710000], rate=34691.70/min 
00], rate=38358.10/min 
[2720000], rate=38372.91/min 
[2730000], rate=38396.62/min 
[2740000], rate=38411.21/min 
[2750000], rate=38461.54/min 
[2760000], rate=38493.72/min 
[2770000], rate=38534.66/min 
[2780000], rate=38566.47/min 
[2790000], rate=38607.01/min 
[2800000], rate=38647.34/min 
[2810000], rate=38678.60/min 
[2820000], rate=38736.26/min 
[2830000], rate=38793.69/min 
[2840000], rate=38868.61/min 
[2850000], rate=38925.56/min 
[2860000], rate=38982.28/min 
[2870000], rate=39047.62/min 
[2880000], rate=39112.72/min 
[2890000], rate=39186.44/min 
[2900000], rate=39251.07/min 
[2910000], rate=39324.32/min 
[2920000], rate=39388.49/min 
[2930000], rate=39461.28/min 
[2940000], rate=39533.84/min 
[2950000], rate=39623.91/min 
[2960000], rate=39687.15/min 
[2970000], rate=39759.04/min 
[2980000], rate=39830.70/min 
[2990000], rate=39902.14/min 
[3000000], rate=39982.23/min 
[3010000], rate=40062.11/min 
[3020000], rate=40141.78/min 
[3030000], rate=40221.24/min 
[3040000], rate=40291.58/min 
[3050000], rate=40317.25/min 
[3060000], rate=40351.65/min 
[3070000], rate=40403.60/min 
[3080000], rate=40455.34/min 
[3090000], rate=40506.88/min 
[3100000], rate=40558.22/min 
[3110000], rate=40609.36/min 
[3120000], rate=40660.30/min 
[3130000], rate=40711.03/min 
[3140000], rate=40761.58/min 
[3150000], rate=40820.73/min 
[3160000], rate=40879.69/min 
[3170000], rate=40938.44/min 
[3180000], rate=40996.99/min 
[3190000], rate=41055.34/min 
[3200000], rate=41122.30/min 
[3210000], rate=41206.68/min 
[3220000], rate=41273.23/min 
[3230000], rate=41330.77/min 
[3240000], rate=41388.12/min 
[3250000], rate=41445.27/min 
[3260000], rate=41519.85/min 
[3270000], rate=41594.23/min 
[3280000], rate=41659.61/min 
[3290000], rate=41724.79/min 
[3300000], rate=41798.61/min 
[3310000], rate=41881.06/min 
[3320000], rate=41954.51/min 
[3330000], rate=42027.77/min 
[3340000], rate=42039.02/min 
[3350000], rate=42023.83/min 
[3360000], rate=41991.25/min 
[3370000], rate=41967.62/min 
[3380000], rate=41909.49/min 
[3390000], rate=41869.08/min 
[3400000], rate=41863.33/min 
[3410000], rate=41891.89/min [2720000], rate=36274.73/min 
[2730000], rate=36335.40/min 
[2740000], rate=36387.78/min 
[2750000], rate=36439.93/min 
[2760000], rate=36491.85/min 
[2770000], rate=36543.54/min 
[2780000], rate=36595.00/min 
[2790000], rate=36654.26/min 
[2800000], rate=36721.31/min 
[2810000], rate=36788.13/min 
[2820000], rate=36862.75/min 
[2830000], rate=36937.13/min 
[2840000], rate=37003.26/min 
[2850000], rate=37069.15/min 
[2860000], rate=37142.86/min 
[2870000], rate=37208.30/min 
[2880000], rate=37281.55/min 
[2890000], rate=37354.59/min 
[2900000], rate=37427.40/min 
[2910000], rate=37500.00/min 
[2920000], rate=37572.38/min 
[2930000], rate=37644.54/min 
[2940000], rate=37724.55/min 
[2950000], rate=37796.28/min 
[2960000], rate=37875.88/min 
[2970000], rate=37955.27/min 
[2980000], rate=38034.46/min 
[2990000], rate=38113.45/min 
[3000000], rate=38200.34/min 
[3010000], rate=38278.93/min 
[3020000], rate=38357.32/min 
[3030000], rate=38435.52/min 
[3040000], rate=38521.65/min 
[3050000], rate=38607.59/min 
[3060000], rate=38693.36/min 
[3070000], rate=38770.79/min 
[3080000], rate=38864.35/min 
[3090000], rate=38965.95/min 
[3100000], rate=39059.22/min 
[3110000], rate=39144.12/min 
[3120000], rate=39187.77/min 
[3130000], rate=39239.45/min 
[3140000], rate=39282.74/min 
[3150000], rate=39334.03/min 
[3160000], rate=39376.95/min 
[3170000], rate=39419.69/min 
[3180000], rate=39445.94/min 
[3190000], rate=39488.34/min 
[3200000], rate=39530.57/min 
[3210000], rate=39588.90/min 
[3220000], rate=39655.17/min 
[3230000], rate=39721.25/min 
[3240000], rate=39779.01/min 
[3250000], rate=39844.71/min 
[3260000], rate=39902.08/min 
[3270000], rate=39975.55/min 
[3280000], rate=40040.69/min 
[3290000], rate=40105.65/min 
[3300000], rate=40178.57/min 
[3310000], rate=40243.16/min 
[3320000], rate=40315.73/min 
[3330000], rate=40388.11/min 
[3340000], rate=40468.50/min 
[3350000], rate=40540.54/min 
[3360000], rate=40620.59/min 
[3370000], rate=40708.68/min 
[3380000], rate=40780.21/min 
[3390000], rate=40867.99/min 
[3400000], rate=40947.41/min 
[3410000], rate=41026.67/min 
[3420000], rate=41097.54/min [2720000], rate=34752.98/min 
[2730000], rate=34814.03/min 
[2740000], rate=34867.44/min 
[2750000], rate=34920.63/min 
[2760000], rate=34980.99/min 
[2770000], rate=35048.50/min 
[2780000], rate=35101.01/min 
[2790000], rate=35168.07/min 
[2800000], rate=35234.90/min 
[2810000], rate=35301.51/min 
[2820000], rate=35367.89/min 
[2830000], rate=35456.25/min 
[2840000], rate=35537.02/min 
[2850000], rate=35610.16/min 
[2860000], rate=35683.09/min 
[2870000], rate=35748.39/min 
[2880000], rate=35813.47/min 
[2890000], rate=35878.34/min 
[2900000], rate=35950.41/min 
[2910000], rate=36029.72/min 
[2920000], rate=36101.38/min 
[2930000], rate=36187.73/min 
[2940000], rate=36266.45/min 
[2950000], rate=36352.43/min 
[2960000], rate=36438.24/min 
[2970000], rate=36523.88/min 
[2980000], rate=36601.84/min 
[2990000], rate=36687.12/min 
[3000000], rate=36749.69/min 
[3010000], rate=36819.57/min 
[3020000], rate=36896.76/min 
[3030000], rate=36966.25/min 
[3040000], rate=37043.05/min 
[3050000], rate=37119.68/min 
[3060000], rate=37196.11/min 
[3070000], rate=37272.36/min 
[3080000], rate=37355.97/min 
[3090000], rate=37431.86/min 
[3100000], rate=37522.70/min 
[3110000], rate=37605.80/min 
[3120000], rate=37658.42/min 
[3130000], rate=37688.14/min 
[3140000], rate=37732.83/min 
[3150000], rate=37777.33/min 
[3160000], rate=37821.66/min 
[3170000], rate=37873.36/min 
[3180000], rate=37909.80/min 
[3190000], rate=37961.13/min 
[3200000], rate=37997.23/min 
[3210000], rate=38040.69/min 
[3220000], rate=38076.47/min 
[3230000], rate=38112.09/min 
[3240000], rate=38147.57/min 
[3250000], rate=38182.89/min 
[3260000], rate=38225.52/min 
[3270000], rate=38260.53/min 
[3280000], rate=38302.84/min 
[3290000], rate=38344.99/min 
[3300000], rate=38379.53/min 
[3310000], rate=38421.36/min 
[3320000], rate=38477.88/min 
[3330000], rate=38526.80/min 
[3340000], rate=38568.13/min 
[3350000], rate=38616.71/min 
[3360000], rate=38679.97/min 
[3370000], rate=38735.63/min 
[3380000], rate=38783.71/min 
[3390000], rate=38839.03/min 
[3400000], rate=38894.18/min 
[3410000], rate=38956.59/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads  -J /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt  --genome_lib_dir /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir  --filt_file /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail  -M 50  > /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass 
-parsing /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info.

 6000000.00 reads per min processed...  
 12000000.00 reads per min processed...  
 9000000.00 reads per min processed...  
 12000000.00 reads per min processed...  
 10000000.00 reads per min processed...  
 12000000.00 reads per min processed...  
 10500000.00 reads per min processed...  
 9600000.00 reads per min processed...  
 10800000.00 reads per min processed...  
 10000000.00 reads per min processed...  
 11000000.00 reads per min processed...  
 10285714.29 reads per min processed...  
 11142857.14 reads per min processed...  
 10500000.00 reads per min processed...  
 11250000.00 reads per min processed...  
 10666666.67 reads per min processed...  
 10200000.00 reads per min processed...  
 9818181.82 reads per min processed...  
 9500000.00 reads per min processed...  
 8571428.57 reads per min processed...  
 7875000.00 reads per min processed...  
 7764705.88 reads per min processed...  
 7263157.89 reads per min processed...  
 7200000.00 reads per min processed...  
 6818181.82 reads per min processed...  
 6782608.70 reads per min processed...  
 6480000.00 reads per min processed...  
 6222222.22 reads per min processed...  
 6214285.71 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 6000000.00 reads per min processed...  
 5823529.41 reads per min processed...  
 5828571.43 reads per min processed...  
 5675675.68 reads per min processed...  
 5684210.53 reads per min processed...  
 5550000.00 reads per min processed...  
 5560975.61 reads per min processed...  
 5441860.47 reads per min processed...  
 5454545.45 reads per min processed...  
 5347826.09 reads per min processed...  
 5361702.13 reads per min processed...  
 5265306.12 reads per min processed...  
 5280000.00 reads per min processed...  
 5192307.69 reads per min processed...  
 5111111.11 reads per min processed...  
 5127272.73 reads per min processed...  
 5142857.14 reads per min processed...  
 5068965.52 reads per min processed...  
 5084745.76 reads per min processed...  
 5100000.00 reads per min processed...  
 5032258.06 reads per min processed...  
 5047619.05 reads per min processed...  
 5062500.00 reads per min processed...  
 5000000.00 reads per min processed...  
 5014925.37 reads per min processed...  
 4956521.74 reads per min processed...  
 4971428.57 reads per min processed...  
 4985915.49 reads per min processed...  
 4931506.85 reads per min processed...  
 5013698.63 reads per min processed...  
 5027027.03 reads per min processed...  
 5108108.11 reads per min processed...  
 5120000.00 reads per min processed...  
 5131578.95 reads per min processed...  
 5142857.14 reads per min processed...  
 5153846.15 reads per min processed...  
 5164556.96 reads per min processed...  
 5240506.33 reads per min processed...  
 5250000.00 reads per min processed...  
 5325000.00 reads per min processed...  
 5333333.33 reads per min processed...  
 5341463.41 reads per min processed...  
 5349397.59 reads per min processed...  
 5421686.75 reads per min processed...  
 5428571.43 reads per min processed...  
 5435294.12 reads per min processed...  
 5379310.34 reads per min processed...  
 5386363.64 reads per min processed...  
 5393258.43 reads per min processed...  
 5340659.34 reads per min processed...  
 5347826.09 reads per min processed...  
 5354838.71 reads per min processed...  
 5305263.16 reads per min processed...  
 5312500.00 reads per min processed...  
 5319587.63 reads per min processed...  
 5272727.27 reads per min processed...  
 5280000.00 reads per min processed...  
 5235294.12 reads per min processed...  
 5242718.45 reads per min processed...  
 5250000.00 reads per min processed...  
 5257142.86 reads per min processed...  
 5214953.27 reads per min processed...  
 5222222.22 reads per min processed...  
 5181818.18 reads per min processed...  
 5189189.19 reads per min processed...  
 5196428.57 reads per min processed...  
 5203539.82 reads per min processed...  
 5165217.39 reads per min processed...  
 5172413.79 reads per min processed...  
 5135593.22 reads per min processed...  
 5100000.00 reads per min processed...  
 5107438.02 reads per min processed...  
done.

* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict  -J /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass  -O /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion 
-parsing fusion evidence: /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass
-outputting fusion candidates to file: /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary
* Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter  --fusion_preds /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary  -J /tmp/nxf.8oVrzBxDja/1173_IT6_T1_RNA_SLD_01_A23T55JLT4_1.Chimeric.out.junction  --tmpdir /tmp  --min_junction_reads 0  --min_sum_frags 1  --require_LDAS 0  --max_promiscuity 10  --min_pct_dom_promiscuity 20  --min_novel_junction_support 1  --min_alt_pct_junction 10  --aggregate_novel_junction_dist 5  --min_spanning_frags_only 1  --genome_lib_dir /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir  --out_prefix /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion
CMD: mkdir -p /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.filter.intermediates_dir
EM: Starting log likelihood: -1379955.697969
EM: Round [1] log likelihood: -1379233.100956
EM: Round [2] log likelihood: -1378990.248734
EM: Round [3] log likelihood: -1378881.680614
EM: Round [4] log likelihood: -1378825.531246
EM: Round [5] log likelihood: -1378793.769218
EM: Round [6] log likelihood: -1378774.589493
EM: Round [7] log likelihood: -1378762.373122
EM: Round [8] log likelihood: -1378754.223203
EM: Round [9] log likelihood: -1378748.559052
EM: Round [10] log likelihood: -1378744.478428
EM: Round [11] log likelihood: -1378741.445375
EM: Round [12] log likelihood: -1378739.129474
EM: Round [13] log likelihood: -1378737.319815
EM: Round [14] log likelihood: -1378735.877358
EM: Round [15] log likelihood: -1378734.707701
EM: Round [16] log likelihood: -1378733.745017
EM: Round [17] log likelihood: -1378732.942299
EM: Round [18] log likelihood: -1378732.265254
EM: Round [19] log likelihood: -1378731.688385
EM: Round [20] log likelihood: -1378731.192411
EM: Round [21] log likelihood: -1378730.762529
EM: Round [22] log likelihood: -1378730.387212
EM: Round [23] log likelihood: -1378730.057374
EM: Round [24] log likelihood: -1378729.765773
EM: Round [25] log likelihood: -1378729.506570
EM: Round [26] log likelihood: -1378729.275020
EM: Round [27] log likelihood: -1378729.067226
EM: Round [28] log likelihood: -1378728.879968
EM: Round [29] log likelihood: -1378728.710560
EM: Round [30] log likelihood: -1378728.556749
EM: Round [31] log likelihood: -1378728.416633
EM: Round [32] log likelihood: -1378728.288595
EM: Round [33] log likelihood: -1378728.171256
EM: Round [34] log likelihood: -1378728.063430
EM: Round [35] log likelihood: -1378727.964094
EM: Round [36] log likelihood: -1378727.872363
EM: Round [37] log likelihood: -1378727.787466
EM: Round [38] log likelihood: -1378727.708727
EM: Round [39] log likelihood: -1378727.635556
EM: Round [40] log likelihood: -1378727.567433
EM: Round [41] log likelihood: -1378727.503897
EM: Round [42] log likelihood: -1378727.444541
EM: Round [43] log likelihood: -1378727.389002
EM: Round [44] log likelihood: -1378727.336957
EM: Round [45] log likelihood: -1378727.288118
EM: Round [46] log likelihood: -1378727.242224
EM: Round [47] log likelihood: -1378727.199044
EM: Round [48] log likelihood: -1378727.158367
EM: Round [49] log likelihood: -1378727.120003
EM: Round [50] log likelihood: -1378727.083780
EM: Round [51] log likelihood: -1378727.049543
EM: Round [52] log likelihood: -1378727.017151
EM: Round [53] log likelihood: -1378726.986472
EM: Round [54] log likelihood: -1378726.957391
EM: Round [55] log likelihood: -1378726.929799
EM: Round [56] log likelihood: -1378726.903597
EM: Round [57] log likelihood: -1378726.878695
EM: Round [58] log likelihood: -1378726.855009
EM: Round [59] log likelihood: -1378726.832462
EM: Round [60] log likelihood: -1378726.810984
EM: Round [61] log likelihood: -1378726.790508
EM: Round [62] log likelihood: -1378726.770976
EM: Round [63] log likelihood: -1378726.752331
EM: Round [64] log likelihood: -1378726.734520
EM: Round [65] log likelihood: -1378726.717496
EM: Round [66] log likelihood: -1378726.701214
EM: Round [67] log likelihood: -1378726.685632
EM: Round [68] log likelihood: -1378726.670711
EM: Round [69] log likelihood: -1378726.656416
EM: Round [70] log likelihood: -1378726.642712
EM: Round [71] log likelihood: -1378726.629567
EM: Round [72] log likelihood: -1378726.616953
EM: Round [73] log likelihood: -1378726.604841
EM: Round [74] log likelihood: -1378726.593206
EM: Round [75] log likelihood: -1378726.582024
EM: Round [76] log likelihood: -1378726.571270
EM: Round [77] log likelihood: -1378726.560925
EM: Round [78] log likelihood: -1378726.550968
EM: Round [79] log likelihood: -1378726.541380
EM: Round [80] log likelihood: -1378726.532144
EM: Round [81] log likelihood: -1378726.523242
EM: Round [82] log likelihood: -1378726.514658
EM: Round [83] log likelihood: -1378726.506378
EM: Round [84] log likelihood: -1378726.498388
EM: Round [85] log likelihood: -1378726.490674
EM: Round [86] log likelihood: -1378726.483224
EM: Round [87] log likelihood: -1378726.476026
EM: Round [88] log likelihood: -1378726.469069
EM: Round [89] log likelihood: -1378726.462341
EM: Round [90] log likelihood: -1378726.455834
EM: Round [91] log likelihood: -1378726.449537
EM: Round [92] log likelihood: -1378726.443442
EM: Round [93] log likelihood: -1378726.437540
EM: Round [94] log likelihood: -1378726.431822
EM: Round [95] log likelihood: -1378726.426282
EM: Round [96] log likelihood: -1378726.420911
EM: Round [97] log likelihood: -1378726.415703
EM: Round [98] log likelihood: -1378726.410652
EM: Round [99] log likelihood: -1378726.405750
EM: Round [100] log likelihood: -1378726.400993
EM: Round [101] log likelihood: -1378726.396373
EM: Round [102] log likelihood: -1378726.391887
EM: Round [103] log likelihood: -1378726.387529
EM: Round [104] log likelihood: -1378726.383293
EM: Round [105] log likelihood: -1378726.379175
EM: Round [106] log likelihood: -1378726.375172
EM: Round [107] log likelihood: -1378726.371278
EM: Round [108] log likelihood: -1378726.367489
EM: Round [109] log likelihood: -1378726.363802
EM: Round [110] log likelihood: -1378726.360213
EM: Round [111] log likelihood: -1378726.356718
EM: Round [112] log likelihood: -1378726.353314
EM: Round [113] log likelihood: -1378726.349998
EM: Round [114] log likelihood: -1378726.346767
EM: Round [115] log likelihood: -1378726.343618
EM: Round [116] log likelihood: -1378726.340548
EM: Round [117] log likelihood: -1378726.337554
EM: Round [118] log likelihood: -1378726.334634
EM: Round [119] log likelihood: -1378726.331786
EM: Round [120] log likelihood: -1378726.329006
EM: Round [121] log likelihood: -1378726.326293
EM: Round [122] log likelihood: -1378726.323645
EM: Round [123] log likelihood: -1378726.321059
EM: Round [124] log likelihood: -1378726.318533
EM: Round [125] log likelihood: -1378726.316067
EM: Round [126] log likelihood: -1378726.313657
EM: Round [127] log likelihood: -1378726.311302
EM: Round [128] log likelihood: -1378726.309000
EM: Round [129] log likelihood: -1378726.306750
EM: Round [130] log likelihood: -1378726.304550
EM: Round [131] log likelihood: -1378726.302399
EM: Round [132] log likelihood: -1378726.300295
EM: Round [133] log likelihood: -1378726.298237
EM: Round [134] log likelihood: -1378726.296224
EM: Round [135] log likelihood: -1378726.294253
EM: Round [136] log likelihood: -1378726.292325
EM: Round [137] log likelihood: -1378726.290438
EM: Round [138] log likelihood: -1378726.288590
EM: Round [139] log likelihood: -1378726.286781
EM: Round [140] log likelihood: -1378726.285009
EM: Round [141] log likelihood: -1378726.283274
EM: Round [142] log likelihood: -1378726.281574
EM: Round [143] log likelihood: -1378726.279909
EM: Round [144] log likelihood: -1378726.278278
EM: Round [145] log likelihood: -1378726.276679
EM: Round [146] log likelihood: -1378726.275112
EM: Round [147] log likelihood: -1378726.273577
EM: Round [148] log likelihood: -1378726.272071
EM: Round [149] log likelihood: -1378726.270596
EM: Round [150] log likelihood: -1378726.269149
EM: Round [151] log likelihood: -1378726.267730
EM: Round [152] log likelihood: -1378726.266338
EM: Round [153] log likelihood: -1378726.264973
EM: Round [154] log likelihood: -1378726.263634
EM: Round [155] log likelihood: -1378726.262321
EM: Round [156] log likelihood: -1378726.261032
EM: Round [157] log likelihood: -1378726.259768
EM: Round [158] log likelihood: -1378726.258527
EM: Round [159] log likelihood: -1378726.257310
EM: Round [160] log likelihood: -1378726.256115
EM: Round [161] log likelihood: -1378726.254942
EM: Round [162] log likelihood: -1378726.253790
EM: Round [163] log likelihood: -1378726.252660
EM: Round [164] log likelihood: -1378726.251550
EM: Round [165] log likelihood: -1378726.250460
EM: Round [166] log likelihood: -1378726.249390
EM: Round [167] log likelihood: -1378726.248339
EM: Round [168] log likelihood: -1378726.247307
EM: Round [169] log likelihood: -1378726.246293
EM: Round [170] log likelihood: -1378726.245297
EM: Round [171] log likelihood: -1378726.244319
EM: Round [172] log likelihood: -1378726.243358
EM: Round [173] log likelihood: -1378726.242414
EM: Round [174] log likelihood: -1378726.241487
EM: Round [175] log likelihood: -1378726.240575
EM: Round [176] log likelihood: -1378726.239680
EM: Round [177] log likelihood: -1378726.238799
EM: Round [178] log likelihood: -1378726.237935
EM: Round [179] log likelihood: -1378726.237085
EM: Round [180] log likelihood: -1378726.236249
EM: Round [181] log likelihood: -1378726.235428
EM: Round [182] log likelihood: -1378726.234621
EM: Round [183] log likelihood: -1378726.233827
EM: Round [184] log likelihood: -1378726.233047
EM: Round [185] log likelihood: -1378726.232280
EM: Round [186] log likelihood: -1378726.231526
EM: Round [187] log likelihood: -1378726.230784
EM: Round [188] log likelihood: -1378726.230055
EM: Round [189] log likelihood: -1378726.229338
EM: Round [190] log likelihood: -1378726.228634
EM: Round [191] log likelihood: -1378726.227940
EM: Round [192] log likelihood: -1378726.227258
EM: Round [193] log likelihood: -1378726.226588
EM: Round [194] log likelihood: -1378726.225928
EM: Round [195] log likelihood: -1378726.225280
EM: Round [196] log likelihood: -1378726.224642
EM: Round [197] log likelihood: -1378726.224014
EM: Round [198] log likelihood: -1378726.223397
EM: Round [199] log likelihood: -1378726.222789
EM: Round [200] log likelihood: -1378726.222192
EM: Round [201] log likelihood: -1378726.221604
EM: Round [202] log likelihood: -1378726.221025
EM: Round [203] log likelihood: -1378726.220456
EM: Round [204] log likelihood: -1378726.219896
EM: Round [205] log likelihood: -1378726.219345
EM: Round [206] log likelihood: -1378726.218803
EM: Round [207] log likelihood: -1378726.218270
EM: Round [208] log likelihood: -1378726.217745
EM: Round [209] log likelihood: -1378726.217228
EM: Round [210] log likelihood: -1378726.216720
EM: Round [211] log likelihood: -1378726.216220
EM: Round [212] log likelihood: -1378726.215727
EM: Round [213] log likelihood: -1378726.215243
EM: Round [214] log likelihood: -1378726.214766
EM: Round [215] log likelihood: -1378726.214296
EM: Round [216] log likelihood: -1378726.213834
EM: Round [217] log likelihood: -1378726.213379
EM: Round [218] log likelihood: -1378726.212931
EM: Round [219] log likelihood: -1378726.212491
EM: Round [220] log likelihood: -1378726.212057
EM: Round [221] log likelihood: -1378726.211630
EM: Round [222] log likelihood: -1378726.211209
EM: Round [223] log likelihood: -1378726.210795
EM: Round [224] log likelihood: -1378726.210387
EM: Round [225] log likelihood: -1378726.209986
EM: Round [226] log likelihood: -1378726.209591
EM: Round [227] log likelihood: -1378726.209202
EM: Round [228] log likelihood: -1378726.208819
EM: Round [229] log likelihood: -1378726.208442
EM: Round [230] log likelihood: -1378726.208071
EM: Round [231] log likelihood: -1378726.207705
EM: Round [232] log likelihood: -1378726.207345
EM: Round [233] log likelihood: -1378726.206990
EM: Round [234] log likelihood: -1378726.206641
EM: Round [235] log likelihood: -1378726.206297
EM: Round [236] log likelihood: -1378726.205959
EM: Round [237] log likelihood: -1378726.205625
EM: Round [238] log likelihood: -1378726.205297
EM: Round [239] log likelihood: -1378726.204974
EM: Round [240] log likelihood: -1378726.204655
EM: Round [241] log likelihood: -1378726.204341
EM: Round [242] log likelihood: -1378726.204032
EM: Round [243] log likelihood: -1378726.203728
EM: Round [244] log likelihood: -1378726.203428
EM: Round [245] log likelihood: -1378726.203133
EM: Round [246] log likelihood: -1378726.202842
EM: Round [247] log likelihood: -1378726.202556
EM: Round [248] log likelihood: -1378726.202273
EM: Round [249] log likelihood: -1378726.201995
EM: Round [250] log likelihood: -1378726.201721
EM: Round [251] log likelihood: -1378726.201452
EM: Round [252] log likelihood: -1378726.201186
EM: Round [253] log likelihood: -1378726.200924
EM: Round [254] log likelihood: -1378726.200666
EM: Round [255] log likelihood: -1378726.200412
EM: Round [256] log likelihood: -1378726.200162
EM: Round [257] log likelihood: -1378726.199915
EM: Round [258] log likelihood: -1378726.199672
EM: Round [259] log likelihood: -1378726.199433
EM: Round [260] log likelihood: -1378726.199197
EM: Round [261] log likelihood: -1378726.198964
EM: Round [262] log likelihood: -1378726.198735
EM: Round [263] log likelihood: -1378726.198510
EM: Round [264] log likelihood: -1378726.198287
EM: Round [265] log likelihood: -1378726.198068
EM: Round [266] log likelihood: -1378726.197852
EM: Round [267] log likelihood: -1378726.197640
EM: Round [268] log likelihood: -1378726.197430
EM: Round [269] log likelihood: -1378726.197224
EM: Round [270] log likelihood: -1378726.197020
EM: Round [271] log likelihood: -1378726.196819
EM: Round [272] log likelihood: -1378726.196622
EM: Round [273] log likelihood: -1378726.196427
EM: Round [274] log likelihood: -1378726.196235
EM: Round [275] log likelihood: -1378726.196046
EM: Round [276] log likelihood: -1378726.195859
EM: Round [277] log likelihood: -1378726.195675
EM: Round [278] log likelihood: -1378726.195494
EM: Round [279] log likelihood: -1378726.195316
EM: Round [280] log likelihood: -1378726.195140
EM: Round [281] log likelihood: -1378726.194966
EM: Round [282] log likelihood: -1378726.194795
EM: Round [283] log likelihood: -1378726.194627
EM: Round [284] log likelihood: -1378726.194461
EM: Round [285] log likelihood: -1378726.194297
EM: Round [286] log likelihood: -1378726.194136
EM: Round [287] log likelihood: -1378726.193977
EM: Round [288] log likelihood: -1378726.193820
EM: Round [289] log likelihood: -1378726.193665
EM: Round [290] log likelihood: -1378726.193513
EM: Round [291] log likelihood: -1378726.193363
EM: Round [292] log likelihood: -1378726.193214
EM: Round [293] log likelihood: -1378726.193068
EM: Round [294] log likelihood: -1378726.192925
EM: Round [295] log likelihood: -1378726.192783
EM: Round [296] log likelihood: -1378726.192643
EM: Round [297] log likelihood: -1378726.192505
EM: Round [298] log likelihood: -1378726.192369
EM: Round [299] log likelihood: -1378726.192235
EM: Round [300] log likelihood: -1378726.192103
EM: Round [301] log likelihood: -1378726.191972
EM: Round [302] log likelihood: -1378726.191844
EM: Round [303] log likelihood: -1378726.191717
EM: Round [304] log likelihood: -1378726.191592
EM: Round [305] log likelihood: -1378726.191469
EM: Round [306] log likelihood: -1378726.191348
EM: Round [307] log likelihood: -1378726.191228
EM: Round [308] log likelihood: -1378726.191110
EM: Round [309] log likelihood: -1378726.190994
EM: Round [310] log likelihood: -1378726.190879
EM: Round [311] log likelihood: -1378726.190766
EM: Round [312] log likelihood: -1378726.190654
EM: Round [313] log likelihood: -1378726.190544
EM: Round [314] log likelihood: -1378726.190435
EM: Round [315] log likelihood: -1378726.190328
EM: Round [316] log likelihood: -1378726.190223
EM: Round [317] log likelihood: -1378726.190118
EM: Round [318] log likelihood: -1378726.190016
EM: Round [319] log likelihood: -1378726.189914
EM: Round [320] log likelihood: -1378726.189815
EM: Stopping iterations at round 320 due to insufficient improvement in likelihood.
EM: Starting log likelihood: -1375268.592834
EM: Round [1] log likelihood: -1374731.879951
EM: Round [2] log likelihood: -1374554.814161
EM: Round [3] log likelihood: -1374477.121767
EM: Round [4] log likelihood: -1374438.006189
EM: Round [5] log likelihood: -1374416.607537
EM: Round [6] log likelihood: -1374404.152132
EM: Round [7] log likelihood: -1374396.506681
EM: Round [8] log likelihood: -1374391.582662
EM: Round [9] log likelihood: -1374388.269733
EM: Round [10] log likelihood: -1374385.951498
EM: Round [11] log likelihood: -1374384.271831
EM: Round [12] log likelihood: -1374383.017077
EM: Round [13] log likelihood: -1374382.054418
EM: Round [14] log likelihood: -1374381.298506
EM: Round [15] log likelihood: -1374380.692803
EM: Round [16] log likelihood: -1374380.198800
EM: Round [17] log likelihood: -1374379.789605
EM: Round [18] log likelihood: -1374379.446008
EM: Round [19] log likelihood: -1374379.154008
EM: Round [20] log likelihood: -1374378.903209
EM: Round [21] log likelihood: -1374378.685762
EM: Round [22] log likelihood: -1374378.495650
EM: Round [23] log likelihood: -1374378.328197
EM: Round [24] log likelihood: -1374378.179716
EM: Round [25] log likelihood: -1374378.047272
EM: Round [26] log likelihood: -1374377.928496
EM: Round [27] log likelihood: -1374377.821460
EM: Round [28] log likelihood: -1374377.724578
EM: Round [29] log likelihood: -1374377.636534
EM: Round [30] log likelihood: -1374377.556228
EM: Round [31] log likelihood: -1374377.482731
EM: Round [32] log likelihood: -1374377.415257
EM: Round [33] log likelihood: -1374377.353132
EM: Round [34] log likelihood: -1374377.295778
EM: Round [35] log likelihood: -1374377.242696
EM: Round [36] log likelihood: -1374377.193453
EM: Round [37] log likelihood: -1374377.147669
EM: Round [38] log likelihood: -1374377.105012
EM: Round [39] log likelihood: -1374377.065191
EM: Round [40] log likelihood: -1374377.027948
EM: Round [41] log likelihood: -1374376.993054
EM: Round [42] log likelihood: -1374376.960306
EM: Round [43] log likelihood: -1374376.929523
EM: Round [44] log likelihood: -1374376.900542
EM: Round [45] log likelihood: -1374376.873218
EM: Round [46] log likelihood: -1374376.847419
EM: Round [47] log likelihood: -1374376.823030
EM: Round [48] log likelihood: -1374376.799941
EM: Round [49] log likelihood: -1374376.778058
EM: Round [50] log likelihood: -1374376.757293
EM: Round [51] log likelihood: -1374376.737567
EM: Round [52] log likelihood: -1374376.718806
EM: Round [53] log likelihood: -1374376.700945
EM: Round [54] log likelihood: -1374376.683924
EM: Round [55] log likelihood: -1374376.667687
EM: Round [56] log likelihood: -1374376.652184
EM: Round [57] log likelihood: -1374376.637368
EM: Round [58] log likelihood: -1374376.623196
EM: Round [59] log likelihood: -1374376.609630
EM: Round [60] log likelihood: -1374376.596633
EM: Round [61] log likelihood: -1374376.584171
EM: Round [62] log likelihood: -1374376.572213
EM: Round [63] log likelihood: -1374376.560731
EM: Round [64] log likelihood: -1374376.549698
EM: Round [65] log likelihood: -1374376.539090
EM: Round [66] log likelihood: -1374376.528883
EM: Round [67] log likelihood: -1374376.519056
EM: Round [68] log likelihood: -1374376.509590
EM: Round [69] log likelihood: -1374376.500466
EM: Round [70] log likelihood: -1374376.491666
EM: Round [71] log likelihood: -1374376.483175
EM: Round [72] log likelihood: -1374376.474977
EM: Round [73] log likelihood: -1374376.467058
EM: Round [74] log likelihood: -1374376.459405
EM: Round [75] log likelihood: -1374376.452006
EM: Round [76] log likelihood: -1374376.444848
EM: Round [77] log likelihood: -1374376.437922
EM: Round [78] log likelihood: -1374376.431216
EM: Round [79] log likelihood: -1374376.424721
EM: Round [80] log likelihood: -1374376.418428
EM: Round [81] log likelihood: -1374376.412328
EM: Round [82] log likelihood: -1374376.406413
EM: Round [83] log likelihood: -1374376.400676
EM: Round [84] log likelihood: -1374376.395108
EM: Round [85] log likelihood: -1374376.389704
EM: Round [86] log likelihood: -1374376.384456
EM: Round [87] log likelihood: -1374376.379359
EM: Round [88] log likelihood: -1374376.374406
EM: Round [89] log likelihood: -1374376.369593
EM: Round [90] log likelihood: -1374376.364913
EM: Round [91] log likelihood: -1374376.360362
EM: Round [92] log likelihood: -1374376.355936
EM: Round [93] log likelihood: -1374376.351629
EM: Round [94] log likelihood: -1374376.347437
EM: Round [95] log likelihood: -1374376.343356
EM: Round [96] log likelihood: -1374376.339383
EM: Round [97] log likelihood: -1374376.335512
EM: Round [98] log likelihood: -1374376.331742
EM: Round [99] log likelihood: -1374376.328069
EM: Round [100] log likelihood: -1374376.324489
EM: Round [101] log likelihood: -1374376.320998
EM: Round [102] log likelihood: -1374376.317596
EM: Round [103] log likelihood: -1374376.314277
EM: Round [104] log likelihood: -1374376.311040
EM: Round [105] log likelihood: -1374376.307883
EM: Round [106] log likelihood: -1374376.304801
EM: Round [107] log likelihood: -1374376.301794
EM: Round [108] log likelihood: -1374376.298859
EM: Round [109] log likelihood: -1374376.295994
EM: Round [110] log likelihood: -1374376.293196
EM: Round [111] log likelihood: -1374376.290463
EM: Round [112] log likelihood: -1374376.287794
EM: Round [113] log likelihood: -1374376.285187
EM: Round [114] log likelihood: -1374376.282640
EM: Round [115] log likelihood: -1374376.280151
EM: Round [116] log likelihood: -1374376.277718
EM: Round [117] log likelihood: -1374376.275340
EM: Round [118] log likelihood: -1374376.273016
EM: Round [119] log likelihood: -1374376.270743
EM: Round [120] log likelihood: -1374376.268521
EM: Round [121] log likelihood: -1374376.266348
EM: Round [122] log likelihood: -1374376.264222
EM: Round [123] log likelihood: -1374376.262143
EM: Round [124] log likelihood: -1374376.260109
EM: Round [125] log likelihood: -1374376.258119
EM: Round [126] log likelihood: -1374376.256172
EM: Round [127] log likelihood: -1374376.254267
EM: Round [128] log likelihood: -1374376.252402
EM: Round [129] log likelihood: -1374376.250576
EM: Round [130] log likelihood: -1374376.248789
EM: Round [131] log likelihood: -1374376.247040
EM: Round [132] log likelihood: -1374376.245327
EM: Round [133] log likelihood: -1374376.243650
EM: Round [134] log likelihood: -1374376.242008
EM: Round [135] log likelihood: -1374376.240399
EM: Round [136] log likelihood: -1374376.238824
EM: Round [137] log likelihood: -1374376.237280
EM: Round [138] log likelihood: -1374376.235769
EM: Round [139] log likelihood: -1374376.234288
EM: Round [140] log likelihood: -1374376.232837
EM: Round [141] log likelihood: -1374376.231415
EM: Round [142] log likelihood: -1374376.230022
EM: Round [143] log likelihood: -1374376.228657
EM: Round [144] log likelihood: -1374376.227319
EM: Round [145] log likelihood: -1374376.226008
EM: Round [146] log likelihood: -1374376.224722
EM: Round [147] log likelihood: -1374376.223462
EM: Round [148] log likelihood: -1374376.222227
EM: Round [149] log likelihood: -1374376.221016
EM: Round [150] log likelihood: -1374376.219829
EM: Round [151] log likelihood: -1374376.218665
EM: Round [152] log likelihood: -1374376.217524
EM: Round [153] log likelihood: -1374376.216404
EM: Round [154] log likelihood: -1374376.215307
EM: Round [155] log likelihood: -1374376.214230
EM: Round [156] log likelihood: -1374376.213175
EM: Round [157] log likelihood: -1374376.212139
EM: Round [158] log likelihood: -1374376.211123
EM: Round [159] log likelihood: -1374376.210127
EM: Round [160] log likelihood: -1374376.209150
EM: Round [161] log likelihood: -1374376.208191
EM: Round [162] log likelihood: -1374376.207251
EM: Round [163] log likelihood: -1374376.206328
EM: Round [164] log likelihood: -1374376.205422
EM: Round [165] log likelihood: -1374376.204534
EM: Round [166] log likelihood: -1374376.203662
EM: Round [167] log likelihood: -1374376.202807
EM: Round [168] log likelihood: -1374376.201968
EM: Round [169] log likelihood: -1374376.201144
EM: Round [170] log likelihood: -1374376.200335
EM: Round [171] log likelihood: -1374376.199542
EM: Round [172] log likelihood: -1374376.198763
EM: Round [173] log likelihood: -1374376.197999
EM: Round [174] log likelihood: -1374376.197249
EM: Round [175] log likelihood: -1374376.196512
EM: Round [176] log likelihood: -1374376.195790
EM: Round [177] log likelihood: -1374376.195080
EM: Round [178] log likelihood: -1374376.194383
EM: Round [179] log likelihood: -1374376.193699
EM: Round [180] log likelihood: -1374376.193028
EM: Round [181] log likelihood: -1374376.192369
EM: Round [182] log likelihood: -1374376.191722
EM: Round [183] log likelihood: -1374376.191086
EM: Round [184] log likelihood: -1374376.190463
EM: Round [185] log likelihood: -1374376.189850
EM: Round [186] log likelihood: -1374376.189248
EM: Round [187] log likelihood: -1374376.188658
EM: Round [188] log likelihood: -1374376.188078
EM: Round [189] log likelihood: -1374376.187508
EM: Round [190] log likelihood: -1374376.186949
EM: Round [191] log likelihood: -1374376.186400
EM: Round [192] log likelihood: -1374376.185860
EM: Round [193] log likelihood: -1374376.185330
EM: Round [194] log likelihood: -1374376.184810
EM: Round [195] log likelihood: -1374376.184299
EM: Round [196] log likelihood: -1374376.183797
EM: Round [197] log likelihood: -1374376.183304
EM: Round [198] log likelihood: -1374376.182820
EM: Round [199] log likelihood: -1374376.182344
EM: Round [200] log likelihood: -1374376.181877
EM: Round [201] log likelihood: -1374376.181418
EM: Round [202] log likelihood: -1374376.180967
EM: Round [203] log likelihood: -1374376.180524
EM: Round [204] log likelihood: -1374376.180089
EM: Round [205] log likelihood: -1374376.179662
EM: Round [206] log likelihood: -1374376.179242
EM: Round [207] log likelihood: -1374376.178829
EM: Round [208] log likelihood: -1374376.178424
EM: Round [209] log likelihood: -1374376.178026
EM: Round [210] log likelihood: -1374376.177635
EM: Round [211] log likelihood: -1374376.177250
EM: Round [212] log likelihood: -1374376.176873
EM: Round [213] log likelihood: -1374376.176502
EM: Round [214] log likelihood: -1374376.176137
EM: Round [215] log likelihood: -1374376.175779
EM: Round [216] log likelihood: -1374376.175427
EM: Round [217] log likelihood: -1374376.175081
EM: Round [218] log likelihood: -1374376.174741
EM: Round [219] log likelihood: -1374376.174407
EM: Round [220] log likelihood: -1374376.174079
EM: Round [221] log likelihood: -1374376.173757
EM: Round [222] log likelihood: -1374376.173440
EM: Round [223] log likelihood: -1374376.173129
EM: Round [224] log likelihood: -1374376.172823
EM: Round [225] log likelihood: -1374376.172522
EM: Round [226] log likelihood: -1374376.172227
EM: Round [227] log likelihood: -1374376.171936
EM: Round [228] log likelihood: -1374376.171651
EM: Round [229] log likelihood: -1374376.171370
EM: Round [230] log likelihood: -1374376.171095
EM: Round [231] log likelihood: -1374376.170824
EM: Round [232] log likelihood: -1374376.170558
EM: Round [233] log likelihood: -1374376.170296
EM: Round [234] log likelihood: -1374376.170039
EM: Round [235] log likelihood: -1374376.169786
EM: Round [236] log likelihood: -1374376.169538
EM: Round [237] log likelihood: -1374376.169293
EM: Round [238] log likelihood: -1374376.169053
EM: Round [239] log likelihood: -1374376.168817
EM: Round [240] log likelihood: -1374376.168586
EM: Round [241] log likelihood: -1374376.168358
EM: Round [242] log likelihood: -1374376.168134
EM: Round [243] log likelihood: -1374376.167913
EM: Round [244] log likelihood: -1374376.167697
EM: Round [245] log likelihood: -1374376.167484
EM: Round [246] log likelihood: -1374376.167275
EM: Round [247] log likelihood: -1374376.167069
EM: Round [248] log likelihood: -1374376.166867
EM: Round [249] log likelihood: -1374376.166668
EM: Round [250] log likelihood: -1374376.166473
EM: Round [251] log likelihood: -1374376.166281
EM: Round [252] log likelihood: -1374376.166092
EM: Round [253] log likelihood: -1374376.165907
EM: Round [254] log likelihood: -1374376.165724
EM: Round [255] log likelihood: -1374376.165545
EM: Round [256] log likelihood: -1374376.165369
EM: Round [257] log likelihood: -1374376.165195
EM: Round [258] log likelihood: -1374376.165025
EM: Round [259] log likelihood: -1374376.164857
EM: Round [260] log likelihood: -1374376.164693
EM: Round [261] log likelihood: -1374376.164531
EM: Round [262] log likelihood: -1374376.164372
EM: Round [263] log likelihood: -1374376.164215
EM: Round [264] log likelihood: -1374376.164061
EM: Round [265] log likelihood: -1374376.163910
EM: Round [266] log likelihood: -1374376.163761
EM: Round [267] log likelihood: -1374376.163615
EM: Round [268] log likelihood: -1374376.163471
EM: Round [269] log likelihood: -1374376.163329
EM: Round [270] log likelihood: -1374376.163190
EM: Round [271] log likelihood: -1374376.163054
EM: Round [272] log likelihood: -1374376.162919
EM: Round [273] log likelihood: -1374376.162787
EM: Round [274] log likelihood: -1374376.162657
EM: Round [275] log likelihood: -1374376.162529
EM: Round [276] log likelihood: -1374376.162404
EM: Round [277] log likelihood: -1374376.162280
EM: Round [278] log likelihood: -1374376.162159
EM: Round [279] log likelihood: -1374376.162039
EM: Round [280] log likelihood: -1374376.161922
EM: Round [281] log likelihood: -1374376.161806
EM: Round [282] log likelihood: -1374376.161692
EM: Round [283] log likelihood: -1374376.161581
EM: Round [284] log likelihood: -1374376.161471
EM: Round [285] log likelihood: -1374376.161363
EM: Round [286] log likelihood: -1374376.161256
EM: Round [287] log likelihood: -1374376.161152
EM: Round [288] log likelihood: -1374376.161049
EM: Round [289] log likelihood: -1374376.160948
EM: Round [290] log likelihood: -1374376.160849
EM: Stopping iterations at round 290 due to insufficient improvement in likelihood.
CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20  --fusion_preds /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir 
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir
CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter  --genome_lib_dir /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir  --max_promiscuity 10  --min_pct_dom_promiscuity 20 
CMD: cp /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter
CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged
CMD: ln -sf /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered
* Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 261265943 > /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM
* Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir > /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir --annotate /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot
* Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir
-done, see /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir
-filter_likely_RT_artifacts: (pass: 1043, filtered: 6855)
* Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001
* Running CMD: cp /tmp/nxf.8oVrzBxDja/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv
* Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv
* Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl  --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.8oVrzBxDja/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv
WARNING, no entry stored in dbm for [IGH-.g@-ext]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000226049.3]
WARNING, no entry stored in dbm for [ENSG00000260404.3]
WARNING, no entry stored in dbm for [ENSG00000234715.2]
WARNING, no entry stored in dbm for [ENSG00000261499.2]
WARNING, no entry stored in dbm for [ENSG00000188755.10]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000285835.1]
WARNING, no entry stored in dbm for [ENSG00000237296.9]
WARNING, no entry stored in dbm for [IGH.g@-ext]
WARNING, no entry stored in dbm for [ENSG00000219410.6]
WARNING, no entry stored in dbm for [ENSG00000228100.2]
WARNING, no entry stored in dbm for [ENSG00000281896.1]
WARNING, no entry stored in dbm for [ENSG00000260727.2]
WARNING, no entry stored in dbm for [ENSG00000251314.2]
WARNING, no entry stored in dbm for [ENSG00000288098.1]
WARNING, no entry stored in dbm for [ENSG00000224505.2]
WARNING, no entry stored in dbm for [ENSG00000261329.6]
WARNING, no entry stored in dbm for [ENSG00000174384.9]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000230490.3]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000239883.8]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000181577.16]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000224016.2]
WARNING, no entry stored in dbm for [ENSG00000280828.1]
WARNING, no entry stored in dbm for [ENSG00000282508.2]
WARNING, no entry stored in dbm for [ENSG00000239883.8]
WARNING, no entry stored in dbm for [ENSG00000232527.8]
WARNING, no entry stored in dbm for [ENSG00000272779.1]
WARNING, no entry stored in dbm for [ENSG00000276758.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000236438.7]
WARNING, no entry stored in dbm for [ENSG00000225096.3]
WARNING, no entry stored in dbm for [ENSG00000224505.2]
WARNING, no entry stored in dbm for [ENSG00000254485.5]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000285835.1]
WARNING, no entry stored in dbm for [ENSG00000215546.2]
WARNING, no entry stored in dbm for [ENSG00000240498.9]
WARNING, no entry stored in dbm for [ENSG00000254034.2]
WARNING, no entry stored in dbm for [ENSG00000257252.6]
WARNING, no entry stored in dbm for [ENSG00000238035.8]
WARNING, no entry stored in dbm for [ENSG00000286436.1]
WARNING, no entry stored in dbm for [ENSG00000280136.2]
WARNING, no entry stored in dbm for [ENSG00000266356.1]
WARNING, no entry stored in dbm for [ENSG00000213650.3]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000184319.16]
WARNING, no entry stored in dbm for [ENSG00000268163.1]
WARNING, no entry stored in dbm for [ENSG00000225594.1]
WARNING, no entry stored in dbm for [ENSG00000226823.1]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000287411.1]
WARNING, no entry stored in dbm for [ENSG00000227220.1]
WARNING, no entry stored in dbm for [ENSG00000236166.1]
WARNING, no entry stored in dbm for [ENSG00000249741.2]
WARNING, no entry stored in dbm for [ENSG00000267198.1]
WARNING, no entry stored in dbm for [ENSG00000131484.4]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000273314.1]
WARNING, no entry stored in dbm for [ENSG00000283662.1]
WARNING, no entry stored in dbm for [ENSG00000285331.2]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000226471.6]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000263821.1]
WARNING, no entry stored in dbm for [ENSG00000228463.10]
WARNING, no entry stored in dbm for [ENSG00000215002.2]
WARNING, no entry stored in dbm for [ENSG00000269244.1]
WARNING, no entry stored in dbm for [ENSG00000277610.1]
WARNING, no entry stored in dbm for [ENSG00000241529.3]
WARNING, no entry stored in dbm for [ENSG00000278834.1]
WARNING, no entry stored in dbm for [ENSG00000248927.1]
WARNING, no entry stored in dbm for [ENSG00000203739.4]
WARNING, no entry stored in dbm for [ENSG00000186704.9]
WARNING, no entry stored in dbm for [ENSG00000286458.1]
WARNING, no entry stored in dbm for [ENSG00000249717.1]
WARNING, no entry stored in dbm for [ENSG00000272235.1]
WARNING, no entry stored in dbm for [ENSG00000242338.6]
WARNING, no entry stored in dbm for [ENSG00000243289.1]
WARNING, no entry stored in dbm for [ENSG00000256591.5]
WARNING, no entry stored in dbm for [ENSG00000236021.2]
WARNING, no entry stored in dbm for [ENSG00000266931.2]
WARNING, no entry stored in dbm for [ENSG00000230021.10]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000255085.8]
WARNING, no entry stored in dbm for [ENSG00000259418.1]
WARNING, no entry stored in dbm for [ENSG00000285035.1]
WARNING, no entry stored in dbm for [ENSG00000285077.2]
WARNING, no entry stored in dbm for [ENSG00000286935.1]
WARNING, no entry stored in dbm for [ENSG00000259511.3]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000269293.3]
WARNING, no entry stored in dbm for [ENSG00000237004.4]
WARNING, no entry stored in dbm for [ENSG00000231952.3]
WARNING, no entry stored in dbm for [ENSG00000215812.5]
WARNING, no entry stored in dbm for [ENSG00000268163.1]
WARNING, no entry stored in dbm for [ENSG00000259291.2]
WARNING, no entry stored in dbm for [ENSG00000277654.6]
WARNING, no entry stored in dbm for [ENSG00000227671.4]
WARNING, no entry stored in dbm for [ENSG00000267490.1]
WARNING, no entry stored in dbm for [ENSG00000227110.7]
WARNING, no entry stored in dbm for [ENSG00000199683.1]
WARNING, no entry stored in dbm for [ENSG00000259273.1]
WARNING, no entry stored in dbm for [ENSG00000234825.3]
WARNING, no entry stored in dbm for [ENSG00000250802.7]
WARNING, no entry stored in dbm for [ENSG00000288584.1]
WARNING, no entry stored in dbm for [ENSG00000279217.1]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000272848.2]
WARNING, no entry stored in dbm for [ENSG00000231365.6]
WARNING, no entry stored in dbm for [ENSG00000225878.1]
WARNING, no entry stored in dbm for [ENSG00000225292.2]
WARNING, no entry stored in dbm for [ENSG00000234936.1]
WARNING, no entry stored in dbm for [ENSG00000229036.7]
WARNING, no entry stored in dbm for [ENSG00000257259.3]
WARNING, no entry stored in dbm for [ENSG00000236440.1]
WARNING, no entry stored in dbm for [ENSG00000270863.1]
WARNING, no entry stored in dbm for [ENSG00000275294.4]
WARNING, no entry stored in dbm for [ENSG00000249348.1]
WARNING, no entry stored in dbm for [ENSG00000241627.3]
WARNING, no entry stored in dbm for [ENSG00000233522.1]
WARNING, no entry stored in dbm for [ENSG00000241627.3]
WARNING, no entry stored in dbm for [ENSG00000255652.4]
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000267506.5]
WARNING, no entry stored in dbm for [ENSG00000215246.5]
WARNING, no entry stored in dbm for [ENSG00000268056.5]
WARNING, no entry stored in dbm for [ENSG00000234110.1]
WARNING, no entry stored in dbm for [ENSG00000267605.7]
WARNING, no entry stored in dbm for [ENSG00000267605.7]
WARNING, no entry stored in dbm for [ENSG00000285486.1]
WARNING, no entry stored in dbm for [ENSG00000100181.22]
WARNING, no entry stored in dbm for [ENSG00000250130.1]
WARNING, no entry stored in dbm for [ENSG00000229344.1]
WARNING, no entry stored in dbm for [ENSG00000286177.1]
WARNING, no entry stored in dbm for [ENSG00000234271.1]
WARNING, no entry stored in dbm for [ENSG00000251669.6]
WARNING, no entry stored in dbm for [ENSG00000248115.1]
WARNING, no entry stored in dbm for [ENSG00000240549.2]
WARNING, no entry stored in dbm for [ENSG00000235903.9]
WARNING, no entry stored in dbm for [ENSG00000202264.1]
WARNING, no entry stored in dbm for [ENSG00000260271.3]
WARNING, no entry stored in dbm for [ENSG00000227954.7]
WARNING, no entry stored in dbm for [ENSG00000264179.1]
WARNING, no entry stored in dbm for [ENSG00000264538.6]
WARNING, no entry stored in dbm for [ENSG00000241316.8]
WARNING, no entry stored in dbm for [ENSG00000250343.1]
WARNING, no entry stored in dbm for [ENSG00000236480.1]
WARNING, no entry stored in dbm for [ENSG00000230542.6]
WARNING, no entry stored in dbm for [ENSG00000235790.7]
WARNING, no entry stored in dbm for [ENSG00000273073.1]
WARNING, no entry stored in dbm for [ENSG00000158482.10]
WARNING, no entry stored in dbm for [ENSG00000250988.7]
WARNING, no entry stored in dbm for [ENSG00000163597.15]
WARNING, no entry stored in dbm for [ENSG00000286470.1]
WARNING, no entry stored in dbm for [ENSG00000237264.4]
WARNING, no entry stored in dbm for [ENSG00000218363.1]
WARNING, no entry stored in dbm for [ENSG00000237574.1]
WARNING, no entry stored in dbm for [ENSG00000228340.6]
WARNING, no entry stored in dbm for [ENSG00000258545.6]
WARNING, no entry stored in dbm for [ENSG00000218313.1]
WARNING, no entry stored in dbm for [ENSG00000231304.2]
WARNING, no entry stored in dbm for [ENSG00000226377.2]
WARNING, no entry stored in dbm for [ENSG00000214765.8]
WARNING, no entry stored in dbm for [ENSG00000185904.12]
WARNING, no entry stored in dbm for [ENSG00000214765.8]
WARNING, no entry stored in dbm for [ENSG00000247950.7]
WARNING, no entry stored in dbm for [ENSG00000185986.12]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000250284.3]
WARNING, no entry stored in dbm for [ENSG00000225648.5]
WARNING, no entry stored in dbm for [ENSG00000213539.4]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000227681.5]
WARNING, no entry stored in dbm for [ENSG00000236360.2]
WARNING, no entry stored in dbm for [ENSG00000203650.9]
WARNING, no entry stored in dbm for [ENSG00000243053.2]
WARNING, no entry stored in dbm for [ENSG00000214326.2]
WARNING, no entry stored in dbm for [ENSG00000230559.1]
WARNING, no entry stored in dbm for [ENSG00000207205.1]
WARNING, no entry stored in dbm for [ENSG00000207359.1]
WARNING, no entry stored in dbm for [ENSG00000261803.2]
WARNING, no entry stored in dbm for [ENSG00000243562.3]
WARNING, no entry stored in dbm for [ENSG00000240772.3]
WARNING, no entry stored in dbm for [ENSG00000240160.3]
WARNING, no entry stored in dbm for [ENSG00000202406.1]
WARNING, no entry stored in dbm for [ENSG00000269296.1]
WARNING, no entry stored in dbm for [ENSG00000254873.1]
WARNING, no entry stored in dbm for [ENSG00000288620.1]
WARNING, no entry stored in dbm for [ENSG00000244055.2]
WARNING, no entry stored in dbm for [ENSG00000231856.2]
WARNING, no entry stored in dbm for [ENSG00000259706.1]
WARNING, no entry stored in dbm for [ENSG00000257621.8]
WARNING, no entry stored in dbm for [ENSG00000080947.15]
WARNING, no entry stored in dbm for [ENSG00000203739.4]
WARNING, no entry stored in dbm for [ENSG00000203739.4]
WARNING, no entry stored in dbm for [ENSG00000272655.2]
WARNING, no entry stored in dbm for [ENSG00000251125.1]
WARNING, no entry stored in dbm for [ENSG00000254681.6]
WARNING, no entry stored in dbm for [ENSG00000221883.4]
WARNING, no entry stored in dbm for [ENSG00000239883.8]
WARNING, no entry stored in dbm for [ENSG00000154898.15]
WARNING, no entry stored in dbm for [ENSG00000237574.1]
WARNING, no entry stored in dbm for [ENSG00000229017.7]
WARNING, no entry stored in dbm for [ENSG00000222041.11]
WARNING, no entry stored in dbm for [ENSG00000279964.1]
WARNING, no entry stored in dbm for [ENSG00000234840.2]
WARNING, no entry stored in dbm for [ENSG00000253619.1]
WARNING, no entry stored in dbm for [ENSG00000236366.3]
WARNING, no entry stored in dbm for [ENSG00000235823.3]
WARNING, no entry stored in dbm for [ENSG00000239482.6]
WARNING, no entry stored in dbm for [ENSG00000258853.1]
WARNING, no entry stored in dbm for [ENSG00000279759.1]
WARNING, no entry stored in dbm for [ENSG00000232354.8]
WARNING, no entry stored in dbm for [ENSG00000237187.9]
WARNING, no entry stored in dbm for [ENSG00000226232.8]
WARNING, no entry stored in dbm for [ENSG00000255185.6]
WARNING, no entry stored in dbm for [ENSG00000285219.2]
WARNING, no entry stored in dbm for [ENSG00000254614.2]
WARNING, no entry stored in dbm for [ENSG00000236991.6]
WARNING, no entry stored in dbm for [ENSG00000272970.3]
WARNING, no entry stored in dbm for [ENSG00000223489.1]
WARNING, no entry stored in dbm for [ENSG00000214174.8]
WARNING, no entry stored in dbm for [ENSG00000224550.1]
WARNING, no entry stored in dbm for [ENSG00000233031.1]
WARNING, no entry stored in dbm for [ENSG00000251553.1]
WARNING, no entry stored in dbm for [ENSG00000229644.6]
WARNING, no entry stored in dbm for [ENSG00000197568.14]
WARNING, no entry stored in dbm for [ENSG00000254132.1]
WARNING, no entry stored in dbm for [ENSG00000229817.1]
WARNING, no entry stored in dbm for [ENSG00000224413.1]
WARNING, no entry stored in dbm for [ENSG00000205360.6]
WARNING, no entry stored in dbm for [ENSG00000288577.1]
WARNING, no entry stored in dbm for [ENSG00000253604.1]
WARNING, no entry stored in dbm for [ENSG00000284250.1]
WARNING, no entry stored in dbm for [ENSG00000247516.8]
WARNING, no entry stored in dbm for [ENSG00000239470.3]
WARNING, no entry stored in dbm for [ENSG00000267519.6]
WARNING, no entry stored in dbm for [ENSG00000266192.3]
WARNING, no entry stored in dbm for [ENSG00000226445.2]
WARNING, no entry stored in dbm for [ENSG00000258081.4]
WARNING, no entry stored in dbm for [ENSG00000272601.1]
WARNING, no entry stored in dbm for [ENSG00000215154.6]
WARNING, no entry stored in dbm for [ENSG00000283196.2]
WARNING, no entry stored in dbm for [ENSG00000267519.6]
WARNING, no entry stored in dbm for [ENSG00000125122.16]
WARNING, no entry stored in dbm for [ENSG00000253741.2]
WARNING, no entry stored in dbm for [ENSG00000234222.6]
WARNING, no entry stored in dbm for [ENSG00000257139.1]
WARNING, no entry stored in dbm for [ENSG00000257139.1]
WARNING, no entry stored in dbm for [ENSG00000259225.7]
WARNING, no entry stored in dbm for [ENSG00000258678.2]
WARNING, no entry stored in dbm for [ENSG00000259719.6]
WARNING, no entry stored in dbm for [ENSG00000253490.5]
WARNING, no entry stored in dbm for [ENSG00000262188.2]
WARNING, no entry stored in dbm for [ENSG00000224568.2]
WARNING, no entry stored in dbm for [ENSG00000237790.1]
WARNING, no entry stored in dbm for [ENSG00000232827.3]
WARNING, no entry stored in dbm for [ENSG00000236963.7]
WARNING, no entry stored in dbm for [ENSG00000228794.10]
WARNING, no entry stored in dbm for [ENSG00000237248.5]
WARNING, no entry stored in dbm for [ENSG00000250365.7]
WARNING, no entry stored in dbm for [ENSG00000225269.3]
WARNING, no entry stored in dbm for [ENSG00000237945.7]
WARNING, no entry stored in dbm for [ENSG00000260941.1]
WARNING, no entry stored in dbm for [ENSG00000247828.8]
WARNING, no entry stored in dbm for [ENSG00000258955.2]
WARNING, no entry stored in dbm for [ENSG00000280798.1]
WARNING, no entry stored in dbm for [ENSG00000259527.2]
WARNING, no entry stored in dbm for [ENSG00000231721.7]
WARNING, no entry stored in dbm for [ENSG00000239569.3]
WARNING, no entry stored in dbm for [ENSG00000258568.1]
WARNING, no entry stored in dbm for [ENSG00000281912.1]
WARNING, no entry stored in dbm for [ENSG00000250893.1]
WARNING, no entry stored in dbm for [ENSG00000267254.7]
WARNING, no entry stored in dbm for [ENSG00000260714.1]
WARNING, no entry stored in dbm for [ENSG00000234492.4]
WARNING, no entry stored in dbm for [ENSG00000241478.1]
WARNING, no entry stored in dbm for [ENSG00000237840.6]
WARNING, no entry stored in dbm for [ENSG00000275897.1]
WARNING, no entry stored in dbm for [ENSG00000227392.2]
WARNING, no entry stored in dbm for [ENSG00000237380.7]
WARNING, no entry stored in dbm for [ENSG00000230330.1]
WARNING, no entry stored in dbm for [ENSG00000234705.2]
WARNING, no entry stored in dbm for [ENSG00000254783.1]
WARNING, no entry stored in dbm for [ENSG00000258667.2]
WARNING, no entry stored in dbm for [ENSG00000276550.4]
WARNING, no entry stored in dbm for [ENSG00000259845.1]
WARNING, no entry stored in dbm for [ENSG00000223383.1]
WARNING, no entry stored in dbm for [ENSG00000227038.3]
WARNING, no entry stored in dbm for [ENSG00000229180.7]
WARNING, no entry stored in dbm for [ENSG00000154874.15]
WARNING, no entry stored in dbm for [ENSG00000189136.9]
WARNING, no entry stored in dbm for [ENSG00000285664.2]
WARNING, no entry stored in dbm for [ENSG00000260377.1]
WARNING, no entry stored in dbm for [ENSG00000230590.11]
WARNING, no entry stored in dbm for [ENSG00000234975.6]
WARNING, no entry stored in dbm for [ENSG00000218213.1]
WARNING, no entry stored in dbm for [ENSG00000231646.6]
WARNING, no entry stored in dbm for [ENSG00000287129.1]
WARNING, no entry stored in dbm for [ENSG00000286116.1]
WARNING, no entry stored in dbm for [ENSG00000251600.8]
WARNING, no entry stored in dbm for [ENSG00000269155.2]
WARNING, no entry stored in dbm for [ENSG00000214439.4]
WARNING, no entry stored in dbm for [ENSG00000258454.1]
WARNING, no entry stored in dbm for [ENSG00000272253.1]
WARNING, no entry stored in dbm for [ENSG00000212559.1]
WARNING, no entry stored in dbm for [ENSG00000282390.1]
WARNING, no entry stored in dbm for [ENSG00000230239.1]
WARNING, no entry stored in dbm for [ENSG00000259683.1]
WARNING, no entry stored in dbm for [ENSG00000225728.2]
WARNING, no entry stored in dbm for [ENSG00000246366.6]
WARNING, no entry stored in dbm for [ENSG00000237799.2]
WARNING, no entry stored in dbm for [ENSG00000234840.2]
WARNING, no entry stored in dbm for [ENSG00000279232.2]
WARNING, no entry stored in dbm for [ENSG00000223612.3]
WARNING, no entry stored in dbm for [ENSG00000248973.3]
WARNING, no entry stored in dbm for [ENSG00000266708.1]
WARNING, no entry stored in dbm for [ENSG00000237732.9]
WARNING, no entry stored in dbm for [ENSG00000237732.9]
WARNING, no entry stored in dbm for [ENSG00000239202.3]
WARNING, no entry stored in dbm for [ENSG00000283128.2]
WARNING, no entry stored in dbm for [ENSG00000245651.3]
WARNING, no entry stored in dbm for [ENSG00000173209.23]
WARNING, no entry stored in dbm for [ENSG00000197582.5]
WARNING, no entry stored in dbm for [ENSG00000168405.17]
WARNING, no entry stored in dbm for [ENSG00000266984.1]
WARNING, no entry stored in dbm for [ENSG00000233652.1]
WARNING, no entry stored in dbm for [ENSG00000157021.9]
WARNING, no entry stored in dbm for [ENSG00000232023.3]
WARNING, no entry stored in dbm for [ENSG00000226312.7]
WARNING, no entry stored in dbm for [ENSG00000154608.14]
WARNING, no entry stored in dbm for [ENSG00000279936.1]
WARNING, no entry stored in dbm for [ENSG00000276832.2]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000286277.1]
WARNING, no entry stored in dbm for [ENSG00000286277.1]
WARNING, no entry stored in dbm for [ENSG00000251421.2]
WARNING, no entry stored in dbm for [ENSG00000213371.4]
WARNING, no entry stored in dbm for [ENSG00000216613.2]
WARNING, no entry stored in dbm for [ENSG00000233098.9]
WARNING, no entry stored in dbm for [ENSG00000254783.1]
WARNING, no entry stored in dbm for [ENSG00000285413.1]
WARNING, no entry stored in dbm for [ENSG00000220635.2]
WARNING, no entry stored in dbm for [ENSG00000272168.8]
WARNING, no entry stored in dbm for [ENSG00000257818.1]
WARNING, no entry stored in dbm for [ENSG00000230131.6]
WARNING, no entry stored in dbm for [ENSG00000174977.8]
WARNING, no entry stored in dbm for [ENSG00000240089.2]
WARNING, no entry stored in dbm for [ENSG00000279080.1]
WARNING, no entry stored in dbm for [ENSG00000237224.4]
WARNING, no entry stored in dbm for [ENSG00000229127.2]
WARNING, no entry stored in dbm for [ENSG00000227881.1]
WARNING, no entry stored in dbm for [ENSG00000267080.6]
WARNING, no entry stored in dbm for [ENSG00000236495.2]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000250519.7]
WARNING, no entry stored in dbm for [ENSG00000280311.1]
WARNING, no entry stored in dbm for [ENSG00000173727.12]
WARNING, no entry stored in dbm for [ENSG00000285835.1]
WARNING, no entry stored in dbm for [ENSG00000248546.3]
WARNING, no entry stored in dbm for [ENSG00000233406.5]
WARNING, no entry stored in dbm for [ENSG00000215158.9]
WARNING, no entry stored in dbm for [ENSG00000267519.6]
WARNING, no entry stored in dbm for [ENSG00000259984.1]
WARNING, no entry stored in dbm for [ENSG00000286389.1]
WARNING, no entry stored in dbm for [ENSG00000272540.1]
WARNING, no entry stored in dbm for [ENSG00000215014.5]
WARNING, no entry stored in dbm for [ENSG00000232576.2]
WARNING, no entry stored in dbm for [ENSG00000286270.2]
WARNING, no entry stored in dbm for [ENSG00000230731.3]
WARNING, no entry stored in dbm for [ENSG00000219559.1]
WARNING, no entry stored in dbm for [ENSG00000234814.8]
WARNING, no entry stored in dbm for [ENSG00000283480.1]
WARNING, no entry stored in dbm for [ENSG00000287811.1]
WARNING, no entry stored in dbm for [ENSG00000235749.3]
WARNING, no entry stored in dbm for [ENSG00000226149.6]
WARNING, no entry stored in dbm for [ENSG00000228703.1]
WARNING, no entry stored in dbm for [ENSG00000204790.9]
WARNING, no entry stored in dbm for [ENSG00000233178.7]
WARNING, no entry stored in dbm for [ENSG00000237153.4]
WARNING, no entry stored in dbm for [ENSG00000275741.1]
WARNING, no entry stored in dbm for [ENSG00000197670.6]
WARNING, no entry stored in dbm for [ENSG00000262619.2]
WARNING, no entry stored in dbm for [ENSG00000227220.1]
WARNING, no entry stored in dbm for [ENSG00000236166.1]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000227486.2]
WARNING, no entry stored in dbm for [ENSG00000258646.1]
WARNING, no entry stored in dbm for [ENSG00000241473.1]
WARNING, no entry stored in dbm for [ENSG00000185607.5]
WARNING, no entry stored in dbm for [ENSG00000254409.3]
WARNING, no entry stored in dbm for [ENSG00000276216.1]
WARNING, no entry stored in dbm for [ENSG00000274642.1]
WARNING, no entry stored in dbm for [ENSG00000284964.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000275557.1]
WARNING, no entry stored in dbm for [ENSG00000274423.1]
WARNING, no entry stored in dbm for [ENSG00000227733.10]
WARNING, no entry stored in dbm for [ENSG00000256546.2]
WARNING, no entry stored in dbm for [ENSG00000260628.5]
WARNING, no entry stored in dbm for [ENSG00000250999.2]
WARNING, no entry stored in dbm for [ENSG00000278212.2]
WARNING, no entry stored in dbm for [ENSG00000265246.1]
WARNING, no entry stored in dbm for [ENSG00000215302.8]
WARNING, no entry stored in dbm for [ENSG00000282375.1]
WARNING, no entry stored in dbm for [ENSG00000287129.1]
WARNING, no entry stored in dbm for [ENSG00000231646.6]
WARNING, no entry stored in dbm for [ENSG00000287676.1]
WARNING, no entry stored in dbm for [ENSG00000279333.1]
WARNING, no entry stored in dbm for [ENSG00000214132.4]
WARNING, no entry stored in dbm for [ENSG00000288025.1]
WARNING, no entry stored in dbm for [ENSG00000265401.1]
WARNING, no entry stored in dbm for [ENSG00000282057.1]
WARNING, no entry stored in dbm for [ENSG00000239268.3]
WARNING, no entry stored in dbm for [ENSG00000251532.1]
WARNING, no entry stored in dbm for [ENSG00000185986.12]
WARNING, no entry stored in dbm for [ENSG00000229881.1]
WARNING, no entry stored in dbm for [ENSG00000258676.5]
WARNING, no entry stored in dbm for [ENSG00000265936.1]
WARNING, no entry stored in dbm for [ENSG00000214259.3]
WARNING, no entry stored in dbm for [ENSG00000285654.1]
WARNING, no entry stored in dbm for [ENSG00000267620.1]
WARNING, no entry stored in dbm for [ENSG00000264151.6]
WARNING, no entry stored in dbm for [ENSG00000250643.1]
WARNING, no entry stored in dbm for [ENSG00000286563.1]
WARNING, no entry stored in dbm for [ENSG00000269274.1]
WARNING, no entry stored in dbm for [ENSG00000236513.1]
WARNING, no entry stored in dbm for [ENSG00000213250.5]
WARNING, no entry stored in dbm for [ENSG00000234129.8]
WARNING, no entry stored in dbm for [ENSG00000271848.2]
WARNING, no entry stored in dbm for [ENSG00000228222.1]
WARNING, no entry stored in dbm for [ENSG00000283674.3]
WARNING, no entry stored in dbm for [ENSG00000248618.1]
WARNING, no entry stored in dbm for [ENSG00000234677.1]
WARNING, no entry stored in dbm for [ENSG00000255050.1]
WARNING, no entry stored in dbm for [ENSG00000280331.1]
WARNING, no entry stored in dbm for [ENSG00000236297.1]
WARNING, no entry stored in dbm for [ENSG00000228502.1]
WARNING, no entry stored in dbm for [ENSG00000257530.1]
WARNING, no entry stored in dbm for [ENSG00000240535.8]
WARNING, no entry stored in dbm for [ENSG00000240535.8]
WARNING, no entry stored in dbm for [ENSG00000188002.10]
WARNING, no entry stored in dbm for [ENSG00000184188.6]
WARNING, no entry stored in dbm for [ENSG00000263766.5]
WARNING, no entry stored in dbm for [ENSG00000260413.1]
WARNING, no entry stored in dbm for [ENSG00000261273.1]
WARNING, no entry stored in dbm for [ENSG00000244593.1]
WARNING, no entry stored in dbm for [ENSG00000260958.3]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000272800.3]
WARNING, no entry stored in dbm for [ENSG00000273007.2]
WARNING, no entry stored in dbm for [ENSG00000262160.1]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000184319.16]
WARNING, no entry stored in dbm for [ENSG00000269032.1]
WARNING, no entry stored in dbm for [ENSG00000184319.16]
WARNING, no entry stored in dbm for [ENSG00000232386.9]
WARNING, no entry stored in dbm for [ENSG00000262712.1]
WARNING, no entry stored in dbm for [ENSG00000250365.7]
WARNING, no entry stored in dbm for [ENSG00000257890.1]
WARNING, no entry stored in dbm for [ENSG00000242411.2]
WARNING, no entry stored in dbm for [ENSG00000197813.6]
WARNING, no entry stored in dbm for [ENSG00000284649.1]
WARNING, no entry stored in dbm for [ENSG00000260905.1]
WARNING, no entry stored in dbm for [ENSG00000284671.1]
WARNING, no entry stored in dbm for [ENSG00000276548.1]
WARNING, no entry stored in dbm for [ENSG00000189149.12]
WARNING, no entry stored in dbm for [ENSG00000257256.1]
WARNING, no entry stored in dbm for [ENSG00000286220.1]
WARNING, no entry stored in dbm for [ENSG00000233891.8]
WARNING, no entry stored in dbm for [ENSG00000229180.7]
WARNING, no entry stored in dbm for [ENSG00000226824.7]
WARNING, no entry stored in dbm for [ENSG00000226040.3]
WARNING, no entry stored in dbm for [ENSG00000265489.1]
WARNING, no entry stored in dbm for [ENSG00000237251.2]
WARNING, no entry stored in dbm for [ENSG00000243554.1]
WARNING, no entry stored in dbm for [ENSG00000238228.1]
WARNING, no entry stored in dbm for [ENSG00000239556.4]
WARNING, no entry stored in dbm for [ENSG00000272655.2]
WARNING, no entry stored in dbm for [ENSG00000262678.1]
WARNING, no entry stored in dbm for [ENSG00000228113.7]
WARNING, no entry stored in dbm for [ENSG00000229107.2]
WARNING, no entry stored in dbm for [ENSG00000223553.6]


	* STAR-Fusion complete.  See output: /tmp/nxf.8oVrzBxDja/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)