Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/starfusion/ctat_genome_lib_build_dir Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/06a6abf403365b5b3549a083cf61a6/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a9/06a6abf403365b5b3549a083cf61a6/.command.run Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/d837af7d1595f6a13ab28b2db3c52d/1173_LV7_T1_RNA_SLD_01_A23T55JLT4_2_2.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/93/ef39f8d424fb692db6930ec8066710/1173_LV7_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/d837af7d1595f6a13ab28b2db3c52d/1173_LV7_T1_RNA_SLD_01_A23T55JLT4_2_1.fastp.fastq.gz ==> STAGING COMPLETE (6 inputs) -ctat genome lib [/tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir] validates. CMD: mkdir -p /tmp/nxf.KVmV9hHFJy/./_starF_checkpoints CMD: mkdir -p /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary -sample contains 293303435 rnaseq fragments * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes --genome_lib_dir /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir -J /tmp/nxf.KVmV9hHFJy/1173_LV7_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction -O /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --CPU 4 -parsing fusion evidence: /tmp/nxf.KVmV9hHFJy/1173_LV7_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction -building interval tree based on /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=27272.73/min [20000], rate=27906.98/min [30000], rate=28571.43/min [40000], rate=28571.43/min [50000], rate=28571.43/min [60000], rate=29032.26/min [70000], rate=29577.46/min [80000], rate=30379.75/min [90000], rate=30337.08/min [100000], rate=30769.23/min [110000], rate=30841.12/min [120000], rate=31304.35/min [130000], rate=31325.30/min [140000], rate=31460.67/min [150000], rate=31578.95/min [160000], rate=31788.08/min [170000], rate=31974.92/min [180000], rate=32238.81/min [190000], rate=32386.36/min [200000], rate=32432.43/min [210000], rate=32642.49/min [220000], rate=32673.27/min [230000], rate=32935.56/min [240000], rate=32951.95/min [250000], rate=33039.65/min [260000], rate=33191.49/min [270000], rate=33128.83/min [280000], rate=33201.58/min [290000], rate=33333.33/min [300000], rate=33457.25/min [310000], rate=33513.51/min [320000], rate=33743.41/min [330000], rate=34020.62/min [340000], rate=34113.71/min [350000], rate=34369.89/min [360000], rate=34615.38/min [370000], rate=34850.86/min [380000], rate=35076.92/min [390000], rate=35347.43/min [400000], rate=35608.31/min [410000], rate=35807.86/min [420000], rate=35744.68/min [430000], rate=35983.26/min [440000], rate=36313.62/min [450000], rate=36535.86/min [460000], rate=36604.77/min [470000], rate=36910.99/min [480000], rate=37209.30/min [490000], rate=37262.36/min [500000], rate=37037.04/min [510000], rate=36867.47/min [520000], rate=36792.45/min [530000], rate=36259.98/min [540000], rate=36486.49/min [550000], rate=36707.45/min [560000], rate=36641.22/min [570000], rate=36972.97/min [580000], rate=37060.70/min [590000], rate=36951.98/min [600000], rate=37228.54/min [610000], rate=37500.00/min [620000], rate=37766.50/min [630000], rate=38104.84/min [640000], rate=38515.55/min [650000], rate=38575.67/min [660000], rate=38558.91/min [670000], rate=38285.71/min [680000], rate=37603.69/min [690000], rate=37230.22/min [700000], rate=37069.73/min [710000], rate=36947.09/min [720000], rate=36923.08/min [730000], rate=36837.68/min [740000], rate=36785.42/min [750000], rate=36734.69/min [760000], rate=36421.73/min [770000], rate=36320.75/min [780000], rate=35972.33/min [790000], rate=35505.62/min [800000], rate=35476.72/min [810000], rate=35294.12/min [820000], rate=35218.32/min [830000], rate=35095.14/min [840000], rate=35000.00/min [850000], rate=35027.47/min [860000], rate=35078.18/min [870000], rate=35010.06/min [880000], rate=34874.50/min [890000], rate=34652.82/min [900000], rate=34373.01/min [910000], rate=34146.34/min [920000], rate=33969.23/min [930000], rate=33838.69/min [940000], rate=33873.87/min [950000], rate=33827.89/min [960000], rate=33902.30/min [970000], rate=33975.48/min [980000], rate=34086.96/min [990000], rate=34001.14/min [1000000], rate=33821.87/min [1010000], rate=33722.87/min [1020000], rate=33589.46/min [1030000], rate=33441.56/min [1040000], rate=33297.76/min [1050000], rate=33123.03/min [1060000], rate=32970.45/min [1070000], rate=32838.87/min [1080000], rate=32743.81/min [1090000], rate=32651.02/min [1100000], rate=32657.10/min [1110000], rate=32663.07/min [1120000], rate=32621.36/min [1130000], rate=32564.84/min [1140000], rate=32463.22/min [1150000], rate=32593.29/min [1160000], rate=32722.14/min [1170000], rate=32849.79/min [1180000], rate=32976.25/min [1190000], rate=33101.53/min [1200000], rate=33241.00/min [1210000], rate=33379.31/min [1220000], rate=33516.48/min [1230000], rate=33652.53/min [1240000], rate=33802.82/min [1250000], rate=33967.39/min [1260000], rate=34100.14/min [1270000], rate=34247.19/min [1280000], rate=34362.42/min [1290000], rate=34507.36/min [1300000], rate=34651.27/min [1310000], rate=34656.08/min [1320000], rate=34585.15/min [1330000], rate=34530.51/min [1340000], rate=34476.84/min [1350000], rate=34365.72/min [1360000], rate=34300.13/min [1370000], rate=34207.24/min [1380000], rate=34158.42/min [1390000], rate=34166.33/min [1400000], rate=34035.66/min [1410000], rate=34071.69/min [1420000], rate=34134.62/min [1430000], rate=34265.18/min [1440000], rate=34353.88/min [1450000], rate=34441.81/min [1460000], rate=34528.97/min [1470000], rate=34642.58/min [1480000], rate=34660.42/min [1490000], rate=34624.32/min [1500000], rate=34562.21/min [1510000], rate=34474.89/min [1520000], rate=34376.18/min [1530000], rate=34279.31/min [1540000], rate=34146.34/min [1550000], rate=34028.54/min [1560000], rate=33974.59/min [1570000], rate=34044.09/min [1580000], rate=34100.72/min [1590000], rate=34047.11/min [1600000], rate=33779.03/min [1610000], rate=33729.05/min [1620000], rate=33738.29/min [1630000], rate=33735.77/min [1640000], rate=33802.82/min [1650000], rate=33880.90/min [1660000], rate=33923.71/min [1670000], rate=34000.68/min [1680000], rate=34077.08/min [1690000], rate=34175.94/min [1700000], rate=34262.68/min [1710000], rate=34348.84/min [1720000], rate=34445.93/min [1730000], rate=34553.93/min [1740000], rate=34649.85/min [1750000], rate=34756.70/min [1760000], rate=34851.49/min [1770000], rate=34934.21/min [1780000], rate=35027.88/min [1790000], rate=35120.99/min [1800000], rate=35213.56/min [1810000], rate=35305.59/min [1820000], rate=35305.53/min [1830000], rate=35271.44/min [1840000], rate=35361.95/min [1850000], rate=35451.93/min [1860000], rate=35518.78/min [1870000], rate=35607.74/min [1880000], rate=35684.91/min [1890000], rate=35784.16/min [1900000], rate=35860.33/min [1910000], rate=35936.03/min [1920000], rate=36056.34/min [1930000], rate=36164.90/min [1940000], rate=36261.68/min [1950000], rate=36369.29/min [1960000], rate=36453.81/min [1970000], rate=36571.78/min [1980000], rate=36677.99/min [1990000], rate=36738.46/min [2000000], rate=36843.72/min [2010000], rate=36892.02/min [2020000], rate=36951.22/min [2030000], rate=37010.03/min [2040000], rate=37181.04/min [2050000], rate=37227.60/min [2060000], rate=37228.92/min [2070000], rate=37152.26/min [2080000], rate=37198.21/min [2090000], rate=37133.55/min [2100000], rate=37135.28/min [2110000], rate=37158.79/min [2120000], rate=37127.85/min [2130000], rate=37054.22/min [2140000], rate=37024.22/min [2150000], rate=37005.16/min [2160000], rate=37081.55/min [2170000], rate=37157.53/min [2180000], rate=37254.34/min [2190000], rate=37414.58/min [2200000], rate=37489.35/min [2210000], rate=37521.22/min [2220000], rate=37584.65/min [2230000], rate=37668.92/min [2240000], rate=37816.54/min [2250000], rate=37921.35/min [2260000], rate=37983.19/min [2270000], rate=38097.90/min [2280000], rate=38180.30/min [2290000], rate=38272.98/min [2300000], rate=38343.98/min [2310000], rate=38435.94/min [2320000], rate=38538.21/min [2330000], rate=38618.78/min [2340000], rate=38677.69/min [2350000], rate=38757.56/min [2360000], rate=38815.79/min [2370000], rate=38884.33/min [2380000], rate=38952.54/min [2390000], rate=39020.41/min [2400000], rate=39087.95/min [2410000], rate=39155.16/min [2420000], rate=39232.64/min [2430000], rate=39309.79/min [2440000], rate=39397.20/min [2450000], rate=39494.90/min [2460000], rate=39581.66/min [2470000], rate=39657.48/min [2480000], rate=39743.59/min [2490000], rate=39840.00/min [2500000], rate=39893.62/min [2510000], rate=39968.15/min [2520000], rate=40010.58/min [2530000], rate=40052.77/min [2540000], rate=40073.63/min [2550000], rate=40104.85/min [2560000], rate=40135.88/min [2570000], rate=40177.18/min [2580000], rate=40228.69/min [2590000], rate=40279.94/min [2600000], rate=40330.92/min [2610000], rate=40402.48/min [2620000], rate=40452.91/min [2630000], rate=40523.88/min [2640000], rate=40573.77/min [2650000], rate=40633.78/min [2660000], rate=40693.52/min [2670000], rate=40773.73/min [2680000], rate=40853.66/min [2690000], rate=40922.92/min [2700000], rate=40981.53/min [2710000], rate=41039.88/min -building interval tree based on /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=30000.00/min [20000], rate=30769.23/min [30000], rate=34615.38/min [40000], rate=33333.33/min [50000], rate=35294.12/min [60000], rate=36363.64/min [70000], rate=36842.11/min [80000], rate=38095.24/min [90000], rate=39130.43/min [100000], rate=40268.46/min [110000], rate=40993.79/min [120000], rate=41860.47/min [130000], rate=42857.14/min [140000], rate=43750.00/min [150000], rate=44554.46/min [160000], rate=45714.29/min [170000], rate=46575.34/min [180000], rate=47368.42/min [190000], rate=48101.27/min [200000], rate=48780.49/min [210000], rate=49606.30/min [220000], rate=50381.68/min [230000], rate=51111.11/min [240000], rate=50704.23/min [250000], rate=49668.87/min [260000], rate=48447.20/min [270000], rate=47647.06/min [280000], rate=46666.67/min [290000], rate=46153.85/min [300000], rate=45454.55/min [310000], rate=44819.28/min [320000], rate=44547.56/min [330000], rate=44494.38/min [340000], rate=44155.84/min [350000], rate=43933.05/min [360000], rate=43636.36/min [370000], rate=43023.26/min [380000], rate=42696.63/min [390000], rate=42468.24/min [400000], rate=42253.52/min [410000], rate=42268.04/min [420000], rate=42140.47/min [430000], rate=41747.57/min [440000], rate=41772.15/min [450000], rate=41860.47/min [460000], rate=41881.64/min [470000], rate=41531.66/min [480000], rate=41379.31/min [490000], rate=41466.85/min [500000], rate=41608.88/min [510000], rate=41519.67/min [520000], rate=41269.84/min [530000], rate=41352.41/min [540000], rate=41273.89/min [550000], rate=40942.93/min [560000], rate=40826.25/min [570000], rate=40569.40/min [580000], rate=40324.45/min [590000], rate=40549.83/min [600000], rate=40723.98/min [610000], rate=40985.44/min [620000], rate=41241.69/min [630000], rate=41266.38/min [640000], rate=41201.72/min [650000], rate=40837.70/min [660000], rate=40162.27/min [670000], rate=39960.24/min [680000], rate=40197.04/min [690000], rate=40233.24/min [700000], rate=40462.43/min [710000], rate=40610.10/min [720000], rate=40639.70/min [730000], rate=40858.21/min [740000], rate=40846.37/min [750000], rate=41058.39/min [760000], rate=41266.97/min [770000], rate=41286.86/min [780000], rate=41489.36/min [790000], rate=41762.11/min [800000], rate=41994.75/min [810000], rate=42224.15/min [820000], rate=42413.79/min [830000], rate=42096.37/min [840000], rate=41756.42/min [850000], rate=41530.94/min [860000], rate=41313.05/min [870000], rate=40909.09/min [880000], rate=40336.13/min [890000], rate=39555.56/min [900000], rate=38989.17/min [910000], rate=38075.31/min [920000], rate=37449.12/min [930000], rate=37474.82/min [940000], rate=37500.00/min [950000], rate=37549.41/min [960000], rate=37475.60/min [970000], rate=37403.60/min [980000], rate=37500.00/min [990000], rate=37618.75/min [1000000], rate=37759.60/min [1010000], rate=37639.75/min [1020000], rate=37248.93/min [1030000], rate=37184.12/min [1040000], rate=37142.86/min [1050000], rate=37146.23/min [1060000], rate=37106.18/min [1070000], rate=37088.39/min [1080000], rate=36965.20/min [1090000], rate=36515.91/min [1100000], rate=36124.79/min [1110000], rate=35634.03/min [1120000], rate=35183.25/min [1130000], rate=34769.23/min [1140000], rate=34597.88/min [1150000], rate=34226.19/min [1160000], rate=33852.14/min [1170000], rate=33620.69/min [1180000], rate=33396.23/min [1190000], rate=33116.88/min [1200000], rate=32846.72/min [1210000], rate=32658.57/min [1220000], rate=32518.88/min [1230000], rate=32255.24/min [1240000], rate=32068.97/min [1250000], rate=31833.62/min [1260000], rate=31791.42/min [1270000], rate=31670.82/min [1280000], rate=31540.04/min [1290000], rate=31399.59/min [1300000], rate=31262.53/min [1310000], rate=31153.39/min [1320000], rate=31242.60/min [1330000], rate=31380.26/min [1340000], rate=31517.05/min [1350000], rate=31640.62/min [1360000], rate=31775.70/min [1370000], rate=31909.94/min [1380000], rate=32030.95/min [1390000], rate=32163.52/min [1400000], rate=32122.37/min [1410000], rate=32118.45/min [1420000], rate=32102.49/min [1430000], rate=32062.78/min [1440000], rate=32011.86/min [1450000], rate=31891.50/min [1460000], rate=31670.28/min [1470000], rate=31601.58/min [1480000], rate=31556.50/min [1490000], rate=31567.80/min [1500000], rate=31590.03/min [1510000], rate=31524.01/min [1520000], rate=31404.96/min [1530000], rate=31384.62/min [1540000], rate=31375.21/min [1550000], rate=31397.70/min [1560000], rate=31441.05/min [1570000], rate=31274.90/min [1580000], rate=31000.65/min [1590000], rate=30784.12/min [1600000], rate=30582.99/min [1610000], rate=30540.63/min [1620000], rate=30575.65/min [1630000], rate=30629.50/min [1640000], rate=30587.50/min [1650000], rate=30650.15/min [1660000], rate=30665.02/min [1670000], rate=30726.77/min [1680000], rate=30750.46/min [1690000], rate=30745.91/min [1700000], rate=30667.47/min [1710000], rate=30709.37/min [1720000], rate=30778.41/min [1730000], rate=30837.79/min [1740000], rate=30887.57/min [1750000], rate=30936.95/min [1760000], rate=30985.92/min [1770000], rate=30998.25/min [1780000], rate=30956.52/min [1790000], rate=31022.53/min [1800000], rate=31105.99/min [1810000], rate=31188.97/min [1820000], rate=31253.58/min [1830000], rate=31326.68/min [1840000], rate=31408.25/min [1850000], rate=31480.43/min [1860000], rate=31543.24/min [1870000], rate=31614.54/min [1880000], rate=31694.30/min [1890000], rate=31782.51/min [1900000], rate=31870.28/min [1910000], rate=31957.61/min [1920000], rate=32035.60/min [1930000], rate=32122.05/min [1940000], rate=32243.77/min [1950000], rate=32338.31/min [1960000], rate=32432.43/min [1970000], rate=32508.25/min [1980000], rate=32583.65/min [1990000], rate=32685.46/min [2000000], rate=32760.03/min [2010000], rate=32852.08/min [2020000], rate=32943.73/min [2030000], rate=33043.95/min [2040000], rate=33134.81/min [2050000], rate=33225.28/min [2060000], rate=33234.74/min [2070000], rate=33244.11/min [2080000], rate=33253.40/min [2090000], rate=33253.78/min [2100000], rate=33262.94/min [2110000], rate=33298.26/min [2120000], rate=33307.15/min [2130000], rate=33333.33/min [2140000], rate=33359.31/min [2150000], rate=33393.74/min [2160000], rate=33436.53/min [2170000], rate=33461.84/min [2180000], rate=33512.68/min [2190000], rate=33580.37/min [2200000], rate=33622.01/min [2210000], rate=33671.91/min [2220000], rate=33738.60/min [2230000], rate=33804.95/min [2240000], rate=33853.90/min [2250000], rate=33928.12/min [2260000], rate=33993.48/min [2270000], rate=34067.03/min [2280000], rate=34140.25/min [2290000], rate=34213.15/min [2300000], rate=34285.71/min [2310000], rate=34366.48/min [2320000], rate=34446.92/min [2330000], rate=34544.11/min [2340000], rate=34641.01/min [2350000], rate=34754.74/min [2360000], rate=34851.10/min [2370000], rate=34955.75/min [2380000], rate=35042.94/min [2390000], rate=35138.45/min [2400000], rate=35250.92/min [2410000], rate=35345.88/min [2420000], rate=35449.22/min [2430000], rate=35534.97/min [2440000], rate=35629.11/min [2450000], rate=35740.34/min [2460000], rate=35825.24/min [2470000], rate=35909.86/min [2480000], rate=35994.19/min [2490000], rate=36078.24/min [2500000], rate=36162.01/min [2510000], rate=36245.49/min [2520000], rate=36319.96/min [2530000], rate=36350.57/min [2540000], rate=36354.96/min [2550000], rate=36385.26/min [2560000], rate=36415.36/min [2570000], rate=36445.28/min [2580000], rate=36466.43/min [2590000], rate=36496.01/min [2600000], rate=36516.85/min [2610000], rate=36546.09/min [2620000], rate=36583.66/min [2630000], rate=36604.04/min [2640000], rate=36641.22/min [2650000], rate=36669.74/min [2660000], rate=36698.09/min [2670000], rate=36726.27/min [2680000], rate=36762.69/min [2690000], rate=36807.30/min [2700000], rate=36843.30/min [2710000], rate=36895.85/min -building interval tree based on /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir/ref_annot.gtf.mini.sortu -done building interval tree (0.07 min). -mapping reads to genes [10000], rate=66666.67/min [20000], rate=66666.67/min [30000], rate=69230.77/min [40000], rate=70588.24/min [50000], rate=71428.57/min [60000], rate=73469.39/min [70000], rate=75000.00/min [80000], rate=76190.48/min [90000], 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rate=48081.26/min [720000], rate=46551.72/min [730000], rate=44693.88/min [740000], rate=42857.14/min [750000], rate=40687.16/min [760000], rate=39276.49/min [770000], rate=37168.14/min [780000], rate=35082.46/min [790000], rate=32962.45/min [800000], rate=31067.96/min [810000], rate=30337.08/min [820000], rate=29710.14/min [830000], rate=29071.80/min [840000], rate=28203.69/min [850000], rate=27084.44/min [860000], rate=26366.89/min [870000], rate=25575.70/min [880000], rate=24730.68/min [890000], rate=24108.35/min [900000], rate=23326.13/min [910000], rate=23155.22/min [920000], rate=22971.29/min [930000], rate=22784.81/min [940000], rate=22614.27/min [950000], rate=22511.85/min [960000], rate=22230.80/min [970000], rate=21945.70/min [980000], rate=21713.44/min [990000], rate=21282.69/min [1000000], rate=21008.40/min [1010000], rate=20932.64/min [1020000], rate=20887.37/min [1030000], rate=20822.10/min [1040000], rate=20751.58/min [1050000], rate=20710.06/min [1060000], rate=20669.48/min [1070000], rate=20656.37/min [1080000], rate=20577.96/min [1090000], rate=20604.91/min [1100000], rate=20573.57/min [1110000], rate=20555.56/min [1120000], rate=20550.46/min [1130000], rate=20576.63/min [1140000], rate=20590.01/min [1150000], rate=20597.01/min [1160000], rate=20622.22/min [1170000], rate=20647.06/min [1180000], rate=20665.50/min [1190000], rate=20671.69/min [1200000], rate=20707.51/min [1210000], rate=20731.01/min [1220000], rate=20596.51/min [1230000], rate=20591.52/min [1240000], rate=20632.28/min [1250000], rate=20666.85/min [1260000], rate=20723.68/min [1270000], rate=20774.26/min [1280000], rate=20835.59/min [1290000], rate=20896.33/min [1300000], rate=20950.85/min [1310000], rate=20999.20/min [1320000], rate=21052.63/min [1330000], rate=21116.70/min [1340000], rate=21174.61/min [1350000], rate=21231.98/min [1360000], rate=21288.81/min [1370000], rate=21334.03/min [1380000], rate=21378.78/min [1390000], rate=21445.10/min [1400000], rate=21510.88/min [1410000], rate=21570.63/min [1420000], rate=21629.86/min [1430000], rate=21694.06/min [1440000], rate=21768.71/min [1450000], rate=21831.87/min [1460000], rate=21878.12/min [1470000], rate=21945.76/min [1480000], rate=22012.89/min [1490000], rate=22084.98/min [1500000], rate=22151.12/min [1510000], rate=22222.22/min [1520000], rate=22287.39/min [1530000], rate=22346.64/min [1540000], rate=22410.87/min [1550000], rate=22474.63/min [1560000], rate=22548.78/min [1570000], rate=22622.48/min [1580000], rate=22695.71/min [1590000], rate=22779.37/min [1600000], rate=22862.59/min [1610000], rate=22945.37/min [1620000], rate=23027.72/min [1630000], rate=23115.10/min [1640000], rate=23207.55/min [1650000], rate=23294.12/min [1660000], rate=23391.26/min [1670000], rate=23482.54/min [1680000], rate=23573.43/min [1690000], rate=23663.94/min [1700000], rate=23748.54/min [1710000], rate=23838.29/min [1720000], rate=23927.66/min [1730000], rate=24016.66/min [1740000], rate=24105.29/min [1750000], rate=24199.12/min [1760000], rate=24287.03/min [1770000], rate=24385.76/min [1780000], rate=24478.57/min [1790000], rate=24571.04/min [1800000], rate=24657.53/min [1810000], rate=24749.32/min [1820000], rate=24846.42/min [1830000], rate=24937.54/min [1840000], rate=25034.01/min [1850000], rate=25130.18/min [1860000], rate=25226.04/min [1870000], rate=25293.06/min [1880000], rate=25354.01/min [1890000], rate=25408.92/min [1900000], rate=25469.17/min [1910000], rate=25529.07/min [1920000], rate=25594.31/min [1930000], rate=25659.21/min [1940000], rate=25723.76/min [1950000], rate=25793.65/min [1960000], rate=25863.21/min [1970000], rate=25932.43/min [1980000], rate=25995.62/min [1990000], rate=26064.18/min [2000000], rate=26138.10/min [2010000], rate=26223.09/min [2020000], rate=26296.38/min [2030000], rate=26369.34/min [2040000], rate=26453.43/min [2050000], rate=26525.77/min [2060000], rate=26597.81/min [2070000], rate=26669.53/min [2080000], rate=26740.95/min [2090000], rate=26817.79/min [2100000], rate=26894.34/min [2110000], rate=26970.60/min [2120000], rate=27046.57/min [2130000], rate=27122.24/min [2140000], rate=27197.63/min [2150000], rate=27266.96/min [2160000], rate=27347.54/min [2170000], rate=27422.07/min [2180000], rate=27502.10/min [2190000], rate=27581.86/min [2200000], rate=27661.36/min [2210000], rate=27740.59/min [2220000], rate=27825.36/min [2230000], rate=27904.07/min [2240000], rate=27982.51/min [2250000], rate=28066.53/min [2260000], rate=28150.30/min [2270000], rate=28239.68/min [2280000], rate=28322.98/min [2290000], rate=28406.04/min [2300000], rate=28494.73/min [2310000], rate=28524.39/min [2320000], rate=28536.29/min [2330000], rate=28553.92/min [2340000], rate=28565.62/min [2350000], rate=28594.61/min [2360000], rate=28617.62/min [2370000], rate=28646.25/min [2380000], rate=28668.94/min [2390000], rate=28702.96/min [2400000], rate=28719.59/min [2410000], rate=28753.23/min [2420000], rate=28780.97/min [2430000], rate=28814.23/min [2440000], rate=28847.29/min [2450000], rate=28891.51/min [2460000], rate=28935.50/min [2470000], rate=28979.27/min [2480000], rate=29022.82/min [2490000], rate=29071.80/min [2500000], rate=29114.91/min [2510000], rate=29157.79/min [2520000], rate=29206.10/min [2530000], rate=29254.19/min [2540000], rate=29302.06/min [2550000], rate=29355.33/min [2560000], rate=29419.65/min [2570000], rate=29478.11/min [2580000], rate=29541.98/min [2590000], rate=29605.64/min [2600000], rate=29652.16/min [2610000], rate=29704.10/min [2620000], rate=29761.45/min [2630000], rate=29818.59/min [2640000], rate=29875.52/min [2650000], rate=29926.60/min [2660000], rate=29988.73/min [2670000], rate=30045.01/min [2680000], rate=30101.09/min [2690000], rate=30162.59/min [2700000], rate=30218.24/min [2710000], rate=30279.33/min [2720000], rate=30345.85/min [2730000], rate=30406.53/min [2740000], rate=30467.01/min [2750000], rate=30538.59/min [2760000], rate=30604.32/min [2770000], rate=30675.53/min [2780000], rate=30746.54/min [2790000], rate=30817.38/min [2800000], rate=30888.03/min [2810000], rate=30958.50/min [2820000], rate=31034.48/min [2830000], rate=31104.60/min [2840000], rate=31180.24/min [2850000], rate=31250.00/min [2860000], rate=31325.30/min [2870000], rate=31388.99/min [2880000], rate=31423.90/min [2890000], rate=31452.93/min [2900000], rate=31487.51/min [2910000], rate=31516.25/min [2920000], rate=31550.51/min [2930000], rate=31590.30/min [2940000], rate=31624.24/min [2950000], rate=31658.02/min [2960000], rate=31691.65/min [2970000], rate=31736.42/min [2980000], rate=31775.37/min [2990000], rate=31814.15/min [3000000], rate=31852.77/min [3010000], rate=31891.22/min [3020000], rate=31940.77/min [3030000], rate=31978.89/min [3040000], rate=32028.09/min [3050000], rate=32082.75/min [3060000], rate=32131.61/min [3070000], rate=32185.92/min [3080000], rate=32228.81/min [3090000], rate=32271.54/min [3100000], rate=32325.34/min [3110000], rate=32373.35/min [3120000], rate=32415.58/min [3130000], rate=32463.27/min [3140000], rate=32510.79/min [3150000], rate=32558.14/min [3160000], rate=32599.72/min [3170000], rate=32652.36/min [3180000], rate=32699.23/min [3190000], rate=32751.54/min [3200000], rate=32803.69/min [3210000], rate=32850.08/min [3220000], rate=32901.91/min [3230000], rate=32953.58/min [3240000], rate=33010.70/min [3250000], rate=33067.66/min [3260000], rate=33124.47/min [3270000], rate=33181.13/min [3280000], rate=33237.63/min [3290000], rate=33299.60/min [3300000], rate=33361.42/min [3310000], rate=33428.72/min [3320000], rate=33490.25/min [3330000], rate=33551.64/min [3340000], rate=33618.52/min [3350000], rate=33679.62/min [3360000], rate=33746.23/min [3370000], rate=33812.71/min [3380000], rate=33879.05/min [3390000], rate=33939.60/min [3400000], rate=34011.34/min [3410000], rate=34077.28/min [3420000], rate=34143.09/min [3430000], rate=34220.15/min [3440000], rate=34291.41/min [3450000], rate=34362.55/min [3460000], rate=34427.86/min [3470000], rate=34498.76/min [3480000], rate=34558.09/min [3490000], rate=34617.29/min [3500000], rate=34676.35/min [3510000], rate=34741.01/min [3520000], rate=34799.80/min * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.handle_multimapping_reads -J /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt --genome_lib_dir /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir --filt_file /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.fail -M 50 > /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -parsing /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt, organizing read mapping info. 0.00 reads per min processed... 12000000.00 reads per min processed... 18000000.00 reads per min processed... 12000000.00 reads per min processed... 15000000.00 reads per min processed... 12000000.00 reads per min processed... 7000000.00 reads per min processed... 6857142.86 reads per min processed... 6000000.00 reads per min processed... 6000000.00 reads per min processed... 5500000.00 reads per min processed... 5538461.54 reads per min processed... 5200000.00 reads per min processed... 5250000.00 reads per min processed... 5000000.00 reads per min processed... 5052631.58 reads per min processed... 5100000.00 reads per min processed... 4909090.91 reads per min processed... 4956521.74 reads per min processed... 4800000.00 reads per min processed... 4846153.85 reads per min processed... 4888888.89 reads per min processed... 4758620.69 reads per min processed... 4800000.00 reads per min processed... 4687500.00 reads per min processed... 4727272.73 reads per min processed... 4628571.43 reads per min processed... 4666666.67 reads per min processed... 4702702.70 reads per min processed... 4615384.62 reads per min processed... 4650000.00 reads per min processed... 4571428.57 reads per min processed... 4604651.16 reads per min processed... 4636363.64 reads per min processed... 4565217.39 reads per min processed... 4595744.68 reads per min processed... 4530612.24 reads per min processed... 4560000.00 reads per min processed... 4588235.29 reads per min processed... 4528301.89 reads per min processed... 4555555.56 reads per min processed... 4500000.00 reads per min processed... 4526315.79 reads per min processed... 4551724.14 reads per min processed... 4576271.19 reads per min processed... 4524590.16 reads per min processed... 4548387.10 reads per min processed... 4571428.57 reads per min processed... 4593750.00 reads per min processed... 4545454.55 reads per min processed... 4567164.18 reads per min processed... 4588235.29 reads per min processed... 4542857.14 reads per min processed... 4563380.28 reads per min processed... 4583333.33 reads per min processed... 4540540.54 reads per min processed... 4560000.00 reads per min processed... 4578947.37 reads per min processed... 4597402.60 reads per min processed... 4615384.62 reads per min processed... 4575000.00 reads per min processed... 4592592.59 reads per min processed... 4666666.67 reads per min processed... 4682926.83 reads per min processed... 4756097.56 reads per min processed... 4771084.34 reads per min processed... 4785714.29 reads per min processed... 4800000.00 reads per min processed... 4758620.69 reads per min processed... 4772727.27 reads per min processed... 4786516.85 reads per min processed... 4747252.75 reads per min processed... 4760869.57 reads per min processed... 4774193.55 reads per min processed... 4787234.04 reads per min processed... 4800000.00 reads per min processed... 4762886.60 reads per min processed... 4775510.20 reads per min processed... 4787878.79 reads per min processed... 4752475.25 reads per min processed... 4764705.88 reads per min processed... 4730769.23 reads per min processed... 4742857.14 reads per min processed... 4754716.98 reads per min processed... 4766355.14 reads per min processed... 4733944.95 reads per min processed... 4745454.55 reads per min processed... 4756756.76 reads per min processed... 4767857.14 reads per min processed... 4778761.06 reads per min processed... 4747826.09 reads per min processed... 4758620.69 reads per min processed... 4769230.77 reads per min processed... 4779661.02 reads per min processed... 4750000.00 reads per min processed... 4760330.58 reads per min processed... 4770491.80 reads per min processed... done. * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.predict -J /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -O /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion -parsing fusion evidence: /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txt.pass -outputting fusion candidates to file: /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary * Running CMD: /usr/local/src/STAR-Fusion/util/STAR-Fusion.filter --fusion_preds /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary -J /tmp/nxf.KVmV9hHFJy/1173_LV7_T1_RNA_SLD_01_A23T55JLT4_2.Chimeric.out.junction --tmpdir /tmp --min_junction_reads 0 --min_sum_frags 1 --require_LDAS 0 --max_promiscuity 10 --min_pct_dom_promiscuity 20 --min_novel_junction_support 1 --min_alt_pct_junction 10 --aggregate_novel_junction_dist 5 --min_spanning_frags_only 1 --genome_lib_dir /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir --out_prefix /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion CMD: mkdir -p /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir EM: Starting log likelihood: -3520601.543365 EM: Round [1] log likelihood: -3520117.009510 EM: Round [2] log likelihood: -3519944.123951 EM: Round [3] log likelihood: -3519863.345514 EM: Round [4] log likelihood: -3519820.044460 EM: Round [5] log likelihood: -3519794.839808 EM: Round [6] log likelihood: -3519779.259951 EM: Round [7] log likelihood: -3519769.122908 EM: Round [8] log likelihood: -3519762.212839 EM: Round [9] log likelihood: -3519757.300464 EM: Round [10] log likelihood: -3519753.677345 EM: Round [11] log likelihood: -3519750.919739 EM: Round [12] log likelihood: -3519748.764552 EM: Round [13] log likelihood: -3519747.042370 EM: Round [14] log likelihood: -3519745.640278 EM: Round [15] log likelihood: -3519744.480609 EM: Round [16] log likelihood: -3519743.508409 EM: Round [17] log likelihood: -3519742.683809 EM: Round [18] log likelihood: -3519741.977249 EM: Round [19] log likelihood: -3519741.366384 EM: Round [20] log likelihood: -3519740.834037 EM: Round [21] log likelihood: -3519740.366806 EM: Round [22] log likelihood: -3519739.954094 EM: Round [23] log likelihood: -3519739.587422 EM: Round [24] log likelihood: -3519739.259935 EM: Round [25] log likelihood: -3519738.966031 EM: Round [26] log likelihood: -3519738.701100 EM: Round [27] log likelihood: -3519738.461308 EM: Round [28] log likelihood: -3519738.243452 EM: Round [29] log likelihood: -3519738.044831 EM: Round [30] log likelihood: -3519737.863158 EM: Round [31] log likelihood: -3519737.696481 EM: Round [32] log likelihood: -3519737.543127 EM: Round [33] log likelihood: -3519737.401658 EM: Round [34] log likelihood: -3519737.270825 EM: Round [35] log likelihood: -3519737.149547 EM: Round [36] log likelihood: -3519737.036876 EM: Round [37] log likelihood: -3519736.931985 EM: Round [38] log likelihood: -3519736.834144 EM: Round [39] log likelihood: -3519736.742712 EM: Round [40] log likelihood: -3519736.657118 EM: Round [41] log likelihood: -3519736.576857 EM: Round [42] log likelihood: -3519736.501479 EM: Round [43] log likelihood: -3519736.430580 EM: Round [44] log likelihood: -3519736.363802 EM: Round [45] log likelihood: -3519736.300819 EM: Round [46] log likelihood: -3519736.241340 EM: Round [47] log likelihood: -3519736.185103 EM: Round [48] log likelihood: -3519736.131868 EM: Round [49] log likelihood: -3519736.081420 EM: Round [50] log likelihood: -3519736.033563 EM: Round [51] log likelihood: -3519735.988119 EM: Round [52] log likelihood: -3519735.944923 EM: Round [53] log likelihood: -3519735.903827 EM: Round [54] log likelihood: -3519735.864694 EM: Round [55] log likelihood: -3519735.827400 EM: Round [56] log likelihood: -3519735.791829 EM: Round [57] log likelihood: -3519735.757874 EM: Round [58] log likelihood: -3519735.725440 EM: Round [59] log likelihood: -3519735.694434 EM: Round [60] log likelihood: -3519735.664774 EM: Round [61] log likelihood: -3519735.636383 EM: Round [62] log likelihood: -3519735.609188 EM: Round [63] log likelihood: -3519735.583124 EM: Round [64] log likelihood: -3519735.558129 EM: Round [65] log likelihood: -3519735.534144 EM: Round [66] log likelihood: -3519735.511117 EM: Round [67] log likelihood: -3519735.488997 EM: Round [68] log likelihood: -3519735.467737 EM: Round [69] log likelihood: -3519735.447295 EM: Round [70] log likelihood: -3519735.427629 EM: Round [71] log likelihood: -3519735.408700 EM: Round [72] log likelihood: -3519735.390473 EM: Round [73] log likelihood: -3519735.372915 EM: Round [74] log likelihood: -3519735.355992 EM: Round [75] log likelihood: -3519735.339677 EM: Round [76] log likelihood: -3519735.323940 EM: Round [77] log likelihood: -3519735.308756 EM: Round [78] log likelihood: -3519735.294099 EM: Round [79] log likelihood: -3519735.279946 EM: Round [80] log likelihood: -3519735.266276 EM: Round [81] log likelihood: -3519735.253066 EM: Round [82] log likelihood: -3519735.240297 EM: Round [83] log likelihood: -3519735.227951 EM: Round [84] log likelihood: -3519735.216010 EM: Round [85] log likelihood: -3519735.204457 EM: Round [86] log likelihood: -3519735.193277 EM: Round [87] log likelihood: -3519735.182453 EM: Round [88] log likelihood: -3519735.171972 EM: Round [89] log likelihood: -3519735.161821 EM: Round [90] log likelihood: -3519735.151986 EM: Round [91] log likelihood: -3519735.142455 EM: Round [92] log likelihood: -3519735.133217 EM: Round [93] log likelihood: -3519735.124259 EM: Round [94] log likelihood: -3519735.115573 EM: Round [95] log likelihood: -3519735.107147 EM: Round [96] log likelihood: -3519735.098972 EM: Round [97] log likelihood: -3519735.091039 EM: Round [98] log likelihood: -3519735.083339 EM: Round [99] log likelihood: -3519735.075864 EM: Round [100] log likelihood: -3519735.068605 EM: Round [101] log likelihood: -3519735.061556 EM: Round [102] log likelihood: -3519735.054708 EM: Round [103] log likelihood: -3519735.048055 EM: Round [104] log likelihood: -3519735.041591 EM: Round [105] log likelihood: -3519735.035307 EM: Round [106] log likelihood: -3519735.029200 EM: Round [107] log likelihood: -3519735.023262 EM: Round [108] log likelihood: -3519735.017488 EM: Round [109] log likelihood: -3519735.011873 EM: Round [110] log likelihood: -3519735.006411 EM: Round [111] log likelihood: -3519735.001097 EM: Round [112] log likelihood: -3519734.995927 EM: Round [113] log likelihood: -3519734.990897 EM: Round [114] log likelihood: -3519734.986000 EM: Round [115] log likelihood: -3519734.981234 EM: Round [116] log likelihood: -3519734.976595 EM: Round [117] log likelihood: -3519734.972078 EM: Round [118] log likelihood: -3519734.967679 EM: Round [119] log likelihood: -3519734.963395 EM: Round [120] log likelihood: -3519734.959223 EM: Round [121] log likelihood: -3519734.955158 EM: Round [122] log likelihood: -3519734.951198 EM: Round [123] log likelihood: -3519734.947340 EM: Round [124] log likelihood: -3519734.943581 EM: Round [125] log likelihood: -3519734.939917 EM: Round [126] log likelihood: -3519734.936345 EM: Round [127] log likelihood: -3519734.932864 EM: Round [128] log likelihood: -3519734.929471 EM: Round [129] log likelihood: -3519734.926162 EM: Round [130] log likelihood: -3519734.922936 EM: Round [131] log likelihood: -3519734.919790 EM: Round [132] log likelihood: -3519734.916721 EM: Round [133] log likelihood: -3519734.913729 EM: Round [134] log likelihood: -3519734.910809 EM: Round [135] log likelihood: -3519734.907962 EM: Round [136] log likelihood: -3519734.905183 EM: Round [137] log likelihood: -3519734.902472 EM: Round [138] log likelihood: -3519734.899826 EM: Round [139] log likelihood: -3519734.897245 EM: Round [140] log likelihood: -3519734.894725 EM: Round [141] log likelihood: -3519734.892265 EM: Round [142] log likelihood: -3519734.889865 EM: Round [143] log likelihood: -3519734.887521 EM: Round [144] log likelihood: -3519734.885233 EM: Round [145] log likelihood: -3519734.882998 EM: Round [146] log likelihood: -3519734.880817 EM: Round [147] log likelihood: -3519734.878686 EM: Round [148] log likelihood: -3519734.876605 EM: Round [149] log likelihood: -3519734.874573 EM: Round [150] log likelihood: -3519734.872588 EM: Round [151] log likelihood: -3519734.870648 EM: Round [152] log likelihood: -3519734.868754 EM: Round [153] log likelihood: -3519734.866903 EM: Round [154] log likelihood: -3519734.865094 EM: Round [155] log likelihood: -3519734.863327 EM: Round [156] log likelihood: -3519734.861600 EM: Round [157] log likelihood: -3519734.859912 EM: Round [158] log likelihood: -3519734.858262 EM: Round [159] log likelihood: -3519734.856650 EM: Round [160] log likelihood: -3519734.855073 EM: Round [161] log likelihood: -3519734.853532 EM: Round [162] log likelihood: -3519734.852026 EM: Round [163] log likelihood: -3519734.850553 EM: Round [164] log likelihood: -3519734.849112 EM: Round [165] log likelihood: -3519734.847704 EM: Round [166] log likelihood: -3519734.846327 EM: Round [167] log likelihood: -3519734.844979 EM: Round [168] log likelihood: -3519734.843662 EM: Round [169] log likelihood: -3519734.842373 EM: Round [170] log likelihood: -3519734.841112 EM: Round [171] log likelihood: -3519734.839879 EM: Round [172] log likelihood: -3519734.838672 EM: Round [173] log likelihood: -3519734.837491 EM: Round [174] log likelihood: -3519734.836336 EM: Round [175] log likelihood: -3519734.835205 EM: Round [176] log likelihood: -3519734.834099 EM: Round [177] log likelihood: -3519734.833016 EM: Round [178] log likelihood: -3519734.831956 EM: Round [179] log likelihood: -3519734.830919 EM: Round [180] log likelihood: -3519734.829903 EM: Round [181] log likelihood: -3519734.828909 EM: Round [182] log likelihood: -3519734.827936 EM: Round [183] log likelihood: -3519734.826983 EM: Round [184] log likelihood: -3519734.826050 EM: Round [185] log likelihood: -3519734.825136 EM: Round [186] log likelihood: -3519734.824241 EM: Round [187] log likelihood: -3519734.823365 EM: Round [188] log likelihood: -3519734.822506 EM: Round [189] log likelihood: -3519734.821666 EM: Round [190] log likelihood: -3519734.820842 EM: Round [191] log likelihood: -3519734.820035 EM: Round [192] log likelihood: -3519734.819244 EM: Round [193] log likelihood: -3519734.818470 EM: Round [194] log likelihood: -3519734.817711 EM: Round [195] log likelihood: -3519734.816967 EM: Round [196] log likelihood: -3519734.816238 EM: Round [197] log likelihood: -3519734.815524 EM: Round [198] log likelihood: -3519734.814824 EM: Round [199] log likelihood: -3519734.814138 EM: Round [200] log likelihood: -3519734.813465 EM: Round [201] log likelihood: -3519734.812806 EM: Round [202] log likelihood: -3519734.812159 EM: Round [203] log likelihood: -3519734.811525 EM: Round [204] log likelihood: -3519734.810904 EM: Round [205] log likelihood: -3519734.810294 EM: Round [206] log likelihood: -3519734.809697 EM: Round [207] log likelihood: -3519734.809111 EM: Round [208] log likelihood: -3519734.808536 EM: Round [209] log likelihood: -3519734.807972 EM: Round [210] log likelihood: -3519734.807418 EM: Round [211] log likelihood: -3519734.806876 EM: Round [212] log likelihood: -3519734.806343 EM: Round [213] log likelihood: -3519734.805821 EM: Round [214] log likelihood: -3519734.805308 EM: Round [215] log likelihood: -3519734.804805 EM: Round [216] log likelihood: -3519734.804311 EM: Round [217] log likelihood: -3519734.803827 EM: Round [218] log likelihood: -3519734.803351 EM: Round [219] log likelihood: -3519734.802885 EM: Round [220] log likelihood: -3519734.802426 EM: Round [221] log likelihood: -3519734.801977 EM: Round [222] log likelihood: -3519734.801535 EM: Round [223] log likelihood: -3519734.801101 EM: Round [224] log likelihood: -3519734.800675 EM: Round [225] log likelihood: -3519734.800257 EM: Round [226] log likelihood: -3519734.799847 EM: Round [227] log likelihood: -3519734.799443 EM: Round [228] log likelihood: -3519734.799047 EM: Round [229] log likelihood: -3519734.798658 EM: Round [230] log likelihood: -3519734.798276 EM: Round [231] log likelihood: -3519734.797900 EM: Round [232] log likelihood: -3519734.797531 EM: Round [233] log likelihood: -3519734.797169 EM: Round [234] log likelihood: -3519734.796812 EM: Round [235] log likelihood: -3519734.796462 EM: Round [236] log likelihood: -3519734.796118 EM: Round [237] log likelihood: -3519734.795780 EM: Round [238] log likelihood: -3519734.795447 EM: Round [239] log likelihood: -3519734.795121 EM: Round [240] log likelihood: -3519734.794799 EM: Round [241] log likelihood: -3519734.794484 EM: Round [242] log likelihood: -3519734.794173 EM: Round [243] log likelihood: -3519734.793868 EM: Round [244] log likelihood: -3519734.793567 EM: Round [245] log likelihood: -3519734.793272 EM: Round [246] log likelihood: -3519734.792981 EM: Round [247] log likelihood: -3519734.792696 EM: Round [248] log likelihood: -3519734.792415 EM: Round [249] log likelihood: -3519734.792138 EM: Round [250] log likelihood: -3519734.791866 EM: Round [251] log likelihood: -3519734.791599 EM: Round [252] log likelihood: -3519734.791335 EM: Round [253] log likelihood: -3519734.791076 EM: Round [254] log likelihood: -3519734.790821 EM: Round [255] log likelihood: -3519734.790570 EM: Round [256] log likelihood: -3519734.790323 EM: Round [257] log likelihood: -3519734.790080 EM: Round [258] log likelihood: -3519734.789841 EM: Round [259] log likelihood: -3519734.789605 EM: Round [260] log likelihood: -3519734.789373 EM: Round [261] log likelihood: -3519734.789145 EM: Round [262] log likelihood: -3519734.788920 EM: Round [263] log likelihood: -3519734.788699 EM: Round [264] log likelihood: -3519734.788481 EM: Round [265] log likelihood: -3519734.788266 EM: Round [266] log likelihood: -3519734.788054 EM: Round [267] log likelihood: -3519734.787846 EM: Round [268] log likelihood: -3519734.787641 EM: Round [269] log likelihood: -3519734.787439 EM: Round [270] log likelihood: -3519734.787239 EM: Round [271] log likelihood: -3519734.787043 EM: Round [272] log likelihood: -3519734.786850 EM: Round [273] log likelihood: -3519734.786659 EM: Round [274] log likelihood: -3519734.786471 EM: Round [275] log likelihood: -3519734.786286 EM: Round [276] log likelihood: -3519734.786103 EM: Round [277] log likelihood: -3519734.785923 EM: Round [278] log likelihood: -3519734.785746 EM: Round [279] log likelihood: -3519734.785571 EM: Round [280] log likelihood: -3519734.785399 EM: Round [281] log likelihood: -3519734.785229 EM: Round [282] log likelihood: -3519734.785061 EM: Round [283] log likelihood: -3519734.784896 EM: Round [284] log likelihood: -3519734.784733 EM: Round [285] log likelihood: -3519734.784572 EM: Round [286] log likelihood: -3519734.784414 EM: Round [287] log likelihood: -3519734.784257 EM: Round [288] log likelihood: -3519734.784103 EM: Round [289] log likelihood: -3519734.783951 EM: Round [290] log likelihood: -3519734.783801 EM: Round [291] log likelihood: -3519734.783653 EM: Round [292] log likelihood: -3519734.783506 EM: Round [293] log likelihood: -3519734.783362 EM: Round [294] log likelihood: -3519734.783220 EM: Round [295] log likelihood: -3519734.783079 EM: Round [296] log likelihood: -3519734.782941 EM: Round [297] log likelihood: -3519734.782804 EM: Round [298] log likelihood: -3519734.782669 EM: Round [299] log likelihood: -3519734.782535 EM: Round [300] log likelihood: -3519734.782404 EM: Round [301] log likelihood: -3519734.782274 EM: Round [302] log likelihood: -3519734.782145 EM: Round [303] log likelihood: -3519734.782019 EM: Round [304] log likelihood: -3519734.781893 EM: Round [305] log likelihood: -3519734.781770 EM: Round [306] log likelihood: -3519734.781648 EM: Round [307] log likelihood: -3519734.781527 EM: Round [308] log likelihood: -3519734.781408 EM: Round [309] log likelihood: -3519734.781290 EM: Round [310] log likelihood: -3519734.781174 EM: Round [311] log likelihood: -3519734.781059 EM: Round [312] log likelihood: -3519734.780946 EM: Round [313] log likelihood: -3519734.780834 EM: Round [314] log likelihood: -3519734.780723 EM: Round [315] log likelihood: -3519734.780614 EM: Round [316] log likelihood: -3519734.780506 EM: Round [317] log likelihood: -3519734.780399 EM: Round [318] log likelihood: -3519734.780293 EM: Round [319] log likelihood: -3519734.780189 EM: Round [320] log likelihood: -3519734.780086 EM: Round [321] log likelihood: -3519734.779984 EM: Round [322] log likelihood: -3519734.779883 EM: Round [323] log likelihood: -3519734.779783 EM: Stopping iterations at round 323 due to insufficient improvement in likelihood. EM: Starting log likelihood: -3518258.357531 EM: Round [1] log likelihood: -3517864.619537 EM: Round [2] log likelihood: -3517730.197141 EM: Round [3] log likelihood: -3517669.405647 EM: Round [4] log likelihood: -3517637.548694 EM: Round [5] log likelihood: -3517619.271474 EM: Round [6] log likelihood: -3517608.078734 EM: Round [7] log likelihood: -3517600.839652 EM: Round [8] log likelihood: -3517595.921840 EM: Round [9] log likelihood: -3517592.430682 EM: Round [10] log likelihood: -3517589.855834 EM: Round [11] log likelihood: -3517587.894647 EM: Round [12] log likelihood: -3517586.360486 EM: Round [13] log likelihood: -3517585.133738 EM: Round [14] log likelihood: -3517584.134882 EM: Round [15] log likelihood: -3517583.309239 EM: Round [16] log likelihood: -3517582.618057 EM: Round [17] log likelihood: -3517582.033142 EM: Round [18] log likelihood: -3517581.533499 EM: Round [19] log likelihood: -3517581.103184 EM: Round [20] log likelihood: -3517580.729881 EM: Round [21] log likelihood: -3517580.403931 EM: Round [22] log likelihood: -3517580.117663 EM: Round [23] log likelihood: -3517579.864912 EM: Round [24] log likelihood: -3517579.640675 EM: Round [25] log likelihood: -3517579.440851 EM: Round [26] log likelihood: -3517579.262055 EM: Round [27] log likelihood: -3517579.101470 EM: Round [28] log likelihood: -3517578.956735 EM: Round [29] log likelihood: -3517578.825861 EM: Round [30] log likelihood: -3517578.707160 EM: Round [31] log likelihood: -3517578.599193 EM: Round [32] log likelihood: -3517578.500728 EM: Round [33] log likelihood: -3517578.410705 EM: Round [34] log likelihood: -3517578.328205 EM: Round [35] log likelihood: -3517578.252433 EM: Round [36] log likelihood: -3517578.182694 EM: Round [37] log likelihood: -3517578.118384 EM: Round [38] log likelihood: -3517578.058967 EM: Round [39] log likelihood: -3517578.003976 EM: Round [40] log likelihood: -3517577.952996 EM: Round [41] log likelihood: -3517577.905659 EM: Round [42] log likelihood: -3517577.861640 EM: Round [43] log likelihood: -3517577.820647 EM: Round [44] log likelihood: -3517577.782421 EM: Round [45] log likelihood: -3517577.746728 EM: Round [46] log likelihood: -3517577.713360 EM: Round [47] log likelihood: -3517577.682128 EM: Round [48] log likelihood: -3517577.652864 EM: Round [49] log likelihood: -3517577.625412 EM: Round [50] log likelihood: -3517577.599634 EM: Round [51] log likelihood: -3517577.575405 EM: Round [52] log likelihood: -3517577.552608 EM: Round [53] log likelihood: -3517577.531140 EM: Round [54] log likelihood: -3517577.510905 EM: Round [55] log likelihood: -3517577.491816 EM: Round [56] log likelihood: -3517577.473792 EM: Round [57] log likelihood: -3517577.456762 EM: Round [58] log likelihood: -3517577.440656 EM: Round [59] log likelihood: -3517577.425415 EM: Round [60] log likelihood: -3517577.410979 EM: Round [61] log likelihood: -3517577.397298 EM: Round [62] log likelihood: -3517577.384322 EM: Round [63] log likelihood: -3517577.372007 EM: Round [64] log likelihood: -3517577.360311 EM: Round [65] log likelihood: -3517577.349196 EM: Round [66] log likelihood: -3517577.338626 EM: Round [67] log likelihood: -3517577.328568 EM: Round [68] log likelihood: -3517577.318992 EM: Round [69] log likelihood: -3517577.309869 EM: Round [70] log likelihood: -3517577.301172 EM: Round [71] log likelihood: -3517577.292876 EM: Round [72] log likelihood: -3517577.284959 EM: Round [73] log likelihood: -3517577.277400 EM: Round [74] log likelihood: -3517577.270177 EM: Round [75] log likelihood: -3517577.263272 EM: Round [76] log likelihood: -3517577.256668 EM: Round [77] log likelihood: -3517577.250348 EM: Round [78] log likelihood: -3517577.244297 EM: Round [79] log likelihood: -3517577.238501 EM: Round [80] log likelihood: -3517577.232945 EM: Round [81] log likelihood: -3517577.227618 EM: Round [82] log likelihood: -3517577.222507 EM: Round [83] log likelihood: -3517577.217602 EM: Round [84] log likelihood: -3517577.212892 EM: Round [85] log likelihood: -3517577.208366 EM: Round [86] log likelihood: -3517577.204016 EM: Round [87] log likelihood: -3517577.199834 EM: Round [88] log likelihood: -3517577.195810 EM: Round [89] log likelihood: -3517577.191937 EM: Round [90] log likelihood: -3517577.188208 EM: Round [91] log likelihood: -3517577.184615 EM: Round [92] log likelihood: -3517577.181153 EM: Round [93] log likelihood: -3517577.177816 EM: Round [94] log likelihood: -3517577.174597 EM: Round [95] log likelihood: -3517577.171491 EM: Round [96] log likelihood: -3517577.168493 EM: Round [97] log likelihood: -3517577.165598 EM: Round [98] log likelihood: -3517577.162801 EM: Round [99] log likelihood: -3517577.160098 EM: Round [100] log likelihood: -3517577.157486 EM: Round [101] log likelihood: -3517577.154959 EM: Round [102] log likelihood: -3517577.152514 EM: Round [103] log likelihood: -3517577.150148 EM: Round [104] log likelihood: -3517577.147858 EM: Round [105] log likelihood: -3517577.145639 EM: Round [106] log likelihood: -3517577.143490 EM: Round [107] log likelihood: -3517577.141407 EM: Round [108] log likelihood: -3517577.139387 EM: Round [109] log likelihood: -3517577.137429 EM: Round [110] log likelihood: -3517577.135529 EM: Round [111] log likelihood: -3517577.133686 EM: Round [112] log likelihood: -3517577.131896 EM: Round [113] log likelihood: -3517577.130158 EM: Round [114] log likelihood: -3517577.128470 EM: Round [115] log likelihood: -3517577.126830 EM: Round [116] log likelihood: -3517577.125236 EM: Round [117] log likelihood: -3517577.123686 EM: Round [118] log likelihood: -3517577.122179 EM: Round [119] log likelihood: -3517577.120713 EM: Round [120] log likelihood: -3517577.119287 EM: Round [121] log likelihood: -3517577.117899 EM: Round [122] log likelihood: -3517577.116547 EM: Round [123] log likelihood: -3517577.115231 EM: Round [124] log likelihood: -3517577.113949 EM: Round [125] log likelihood: -3517577.112700 EM: Round [126] log likelihood: -3517577.111483 EM: Round [127] log likelihood: -3517577.110297 EM: Round [128] log likelihood: -3517577.109140 EM: Round [129] log likelihood: -3517577.108012 EM: Round [130] log likelihood: -3517577.106911 EM: Round [131] log likelihood: -3517577.105837 EM: Round [132] log likelihood: -3517577.104789 EM: Round [133] log likelihood: -3517577.103766 EM: Round [134] log likelihood: -3517577.102767 EM: Round [135] log likelihood: -3517577.101791 EM: Round [136] log likelihood: -3517577.100838 EM: Round [137] log likelihood: -3517577.099907 EM: Round [138] log likelihood: -3517577.098997 EM: Round [139] log likelihood: -3517577.098107 EM: Round [140] log likelihood: -3517577.097238 EM: Round [141] log likelihood: -3517577.096388 EM: Round [142] log likelihood: -3517577.095556 EM: Round [143] log likelihood: -3517577.094742 EM: Round [144] log likelihood: -3517577.093946 EM: Round [145] log likelihood: -3517577.093167 EM: Round [146] log likelihood: -3517577.092405 EM: Round [147] log likelihood: -3517577.091659 EM: Round [148] log likelihood: -3517577.090928 EM: Round [149] log likelihood: -3517577.090212 EM: Round [150] log likelihood: -3517577.089511 EM: Round [151] log likelihood: -3517577.088824 EM: Round [152] log likelihood: -3517577.088151 EM: Round [153] log likelihood: -3517577.087492 EM: Round [154] log likelihood: -3517577.086846 EM: Round [155] log likelihood: -3517577.086212 EM: Round [156] log likelihood: -3517577.085591 EM: Round [157] log likelihood: -3517577.084981 EM: Round [158] log likelihood: -3517577.084384 EM: Round [159] log likelihood: -3517577.083798 EM: Round [160] log likelihood: -3517577.083223 EM: Round [161] log likelihood: -3517577.082658 EM: Round [162] log likelihood: -3517577.082105 EM: Round [163] log likelihood: -3517577.081561 EM: Round [164] log likelihood: -3517577.081027 EM: Round [165] log likelihood: -3517577.080504 EM: Round [166] log likelihood: -3517577.079989 EM: Round [167] log likelihood: -3517577.079484 EM: Round [168] log likelihood: -3517577.078988 EM: Round [169] log likelihood: -3517577.078500 EM: Round [170] log likelihood: -3517577.078021 EM: Round [171] log likelihood: -3517577.077551 EM: Round [172] log likelihood: -3517577.077088 EM: Round [173] log likelihood: -3517577.076634 EM: Round [174] log likelihood: -3517577.076187 EM: Round [175] log likelihood: -3517577.075748 EM: Round [176] log likelihood: -3517577.075316 EM: Round [177] log likelihood: -3517577.074891 EM: Round [178] log likelihood: -3517577.074474 EM: Round [179] log likelihood: -3517577.074063 EM: Round [180] log likelihood: -3517577.073659 EM: Round [181] log likelihood: -3517577.073262 EM: Round [182] log likelihood: -3517577.072870 EM: Round [183] log likelihood: -3517577.072486 EM: Round [184] log likelihood: -3517577.072107 EM: Round [185] log likelihood: -3517577.071734 EM: Round [186] log likelihood: -3517577.071367 EM: Round [187] log likelihood: -3517577.071006 EM: Round [188] log likelihood: -3517577.070650 EM: Round [189] log likelihood: -3517577.070300 EM: Round [190] log likelihood: -3517577.069955 EM: Round [191] log likelihood: -3517577.069616 EM: Round [192] log likelihood: -3517577.069281 EM: Round [193] log likelihood: -3517577.068952 EM: Round [194] log likelihood: -3517577.068627 EM: Round [195] log likelihood: -3517577.068308 EM: Round [196] log likelihood: -3517577.067992 EM: Round [197] log likelihood: -3517577.067682 EM: Round [198] log likelihood: -3517577.067376 EM: Round [199] log likelihood: -3517577.067074 EM: Round [200] log likelihood: -3517577.066777 EM: Round [201] log likelihood: -3517577.066484 EM: Round [202] log likelihood: -3517577.066195 EM: Round [203] log likelihood: -3517577.065911 EM: Round [204] log likelihood: -3517577.065630 EM: Round [205] log likelihood: -3517577.065353 EM: Round [206] log likelihood: -3517577.065080 EM: Round [207] log likelihood: -3517577.064811 EM: Round [208] log likelihood: -3517577.064545 EM: Round [209] log likelihood: -3517577.064283 EM: Round [210] log likelihood: -3517577.064024 EM: Round [211] log likelihood: -3517577.063769 EM: Round [212] log likelihood: -3517577.063518 EM: Round [213] log likelihood: -3517577.063270 EM: Round [214] log likelihood: -3517577.063025 EM: Round [215] log likelihood: -3517577.062783 EM: Round [216] log likelihood: -3517577.062544 EM: Round [217] log likelihood: -3517577.062309 EM: Round [218] log likelihood: -3517577.062076 EM: Round [219] log likelihood: -3517577.061847 EM: Round [220] log likelihood: -3517577.061620 EM: Round [221] log likelihood: -3517577.061396 EM: Round [222] log likelihood: -3517577.061176 EM: Round [223] log likelihood: -3517577.060958 EM: Round [224] log likelihood: -3517577.060742 EM: Round [225] log likelihood: -3517577.060530 EM: Round [226] log likelihood: -3517577.060319 EM: Round [227] log likelihood: -3517577.060112 EM: Round [228] log likelihood: -3517577.059907 EM: Round [229] log likelihood: -3517577.059705 EM: Round [230] log likelihood: -3517577.059505 EM: Round [231] log likelihood: -3517577.059307 EM: Round [232] log likelihood: -3517577.059112 EM: Round [233] log likelihood: -3517577.058919 EM: Round [234] log likelihood: -3517577.058729 EM: Round [235] log likelihood: -3517577.058540 EM: Round [236] log likelihood: -3517577.058354 EM: Round [237] log likelihood: -3517577.058170 EM: Round [238] log likelihood: -3517577.057989 EM: Round [239] log likelihood: -3517577.057809 EM: Round [240] log likelihood: -3517577.057631 EM: Round [241] log likelihood: -3517577.057456 EM: Round [242] log likelihood: -3517577.057282 EM: Round [243] log likelihood: -3517577.057111 EM: Round [244] log likelihood: -3517577.056941 EM: Round [245] log likelihood: -3517577.056774 EM: Round [246] log likelihood: -3517577.056608 EM: Round [247] log likelihood: -3517577.056444 EM: Round [248] log likelihood: -3517577.056282 EM: Round [249] log likelihood: -3517577.056121 EM: Round [250] log likelihood: -3517577.055963 EM: Round [251] log likelihood: -3517577.055806 EM: Round [252] log likelihood: -3517577.055651 EM: Round [253] log likelihood: -3517577.055498 EM: Round [254] log likelihood: -3517577.055346 EM: Round [255] log likelihood: -3517577.055196 EM: Round [256] log likelihood: -3517577.055047 EM: Round [257] log likelihood: -3517577.054900 EM: Round [258] log likelihood: -3517577.054755 EM: Round [259] log likelihood: -3517577.054611 EM: Round [260] log likelihood: -3517577.054469 EM: Round [261] log likelihood: -3517577.054328 EM: Round [262] log likelihood: -3517577.054189 EM: Round [263] log likelihood: -3517577.054051 EM: Round [264] log likelihood: -3517577.053915 EM: Round [265] log likelihood: -3517577.053780 EM: Round [266] log likelihood: -3517577.053646 EM: Round [267] log likelihood: -3517577.053514 EM: Round [268] log likelihood: -3517577.053383 EM: Round [269] log likelihood: -3517577.053253 EM: Round [270] log likelihood: -3517577.053125 EM: Round [271] log likelihood: -3517577.052998 EM: Round [272] log likelihood: -3517577.052872 EM: Round [273] log likelihood: -3517577.052748 EM: Round [274] log likelihood: -3517577.052625 EM: Round [275] log likelihood: -3517577.052503 EM: Round [276] log likelihood: -3517577.052382 EM: Round [277] log likelihood: -3517577.052263 EM: Round [278] log likelihood: -3517577.052144 EM: Round [279] log likelihood: -3517577.052027 EM: Round [280] log likelihood: -3517577.051911 EM: Round [281] log likelihood: -3517577.051796 EM: Round [282] log likelihood: -3517577.051683 EM: Round [283] log likelihood: -3517577.051570 EM: Round [284] log likelihood: -3517577.051458 EM: Round [285] log likelihood: -3517577.051348 EM: Round [286] log likelihood: -3517577.051238 EM: Round [287] log likelihood: -3517577.051130 EM: Round [288] log likelihood: -3517577.051022 EM: Round [289] log likelihood: -3517577.050916 EM: Round [290] log likelihood: -3517577.050811 EM: Round [291] log likelihood: -3517577.050706 EM: Round [292] log likelihood: -3517577.050603 EM: Round [293] log likelihood: -3517577.050501 EM: Round [294] log likelihood: -3517577.050399 EM: Round [295] log likelihood: -3517577.050299 EM: Round [296] log likelihood: -3517577.050199 EM: Stopping iterations at round 296 due to insufficient improvement in likelihood. CMD: /usr/local/src/STAR-Fusion/util/../FusionFilter/blast_and_promiscuity_filter.pl --out_prefix /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion --max_promiscuity 10 --min_pct_dom_promiscuity 20 --fusion_preds /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/blast_filter.pl --fusion_preds /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter --genome_lib_dir /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/promiscuity_filter.pl --fusion_preds /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter --genome_lib_dir /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir --max_promiscuity 10 --min_pct_dom_promiscuity 20 CMD: cp /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.pre_blast_filter.post_blast_filter.post_promisc_filter /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter JunctionReads,SpanningFrags > /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter.abridged CMD: ln -sf /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.filter.intermediates_dir/star-fusion.post_blast_and_promiscuity_filter /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered * Running CMD: /usr/local/src/STAR-Fusion/util/incorporate_FFPM_into_final_report.pl /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered 293303435 > /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM * Running CMD: /usr/local/src/STAR-Fusion/util/append_breakpoint_junction_info.pl /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.filtered.FFPM /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir > /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/FusionAnnotator --genome_lib_dir /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir --annotate /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo > /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot * Running CMD: /usr/local/src/STAR-Fusion/FusionFilter/util/filter_by_annotation_rules.pl --fusions /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot --genome_lib_dir /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir -done, see /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass * Running CMD: /usr/local/src/STAR-Fusion/util/filter_likely_RT_artifacts.pl --fusions /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass --genome_lib_dir /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir -filter_likely_RT_artifacts: (pass: 543, filtered: 4150) * Running CMD: /usr/local/src/STAR-Fusion/util/filter_by_min_FFPM.pl /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass 0.00001 * Running CMD: cp /tmp/nxf.KVmV9hHFJy/./star-fusion.preliminary/star-fusion.fusion_candidates.preliminary.wSpliceInfo.wAnnot.annot_filter.pass.RTartifact.pass.minFFPM.0.00001.pass star-fusion.fusion_predictions.tsv * Running CMD: /usr/local/src/STAR-Fusion/util/column_exclusions.pl star-fusion.fusion_predictions.tsv JunctionReads,SpanningFrags > star-fusion.fusion_predictions.abridged.tsv * Running CMD: /usr/local/src/STAR-Fusion/FusionAnnotator/util/fusion_to_coding_region_effect.pl --fusions star-fusion.fusion_predictions.abridged.tsv --genome_lib_dir /tmp/nxf.KVmV9hHFJy/ctat_genome_lib_build_dir > star-fusion.fusion_predictions.abridged.coding_effect.tsv WARNING, no entry stored in dbm for [ENSG00000231426.7] WARNING, no entry stored in dbm for [ENSG00000234715.2] WARNING, no entry stored in dbm for [ENSG00000226049.3] WARNING, no entry stored in dbm for [ENSG00000260404.3] WARNING, no entry stored in dbm for [ENSG00000203413.3] WARNING, no entry stored in dbm for [ENSG00000257403.2] WARNING, no entry stored in dbm for [ENSG00000189149.12] WARNING, no entry stored in dbm for [ENSG00000214433.4] WARNING, no entry stored in dbm for [ENSG00000237296.9] WARNING, no entry stored in dbm for [ENSG00000285600.1] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000280136.2] WARNING, no entry stored in dbm for [ENSG00000279821.1] WARNING, no entry stored in dbm for [ENSG00000229739.4] WARNING, no entry stored in dbm for [ENSG00000181126.13] WARNING, no entry stored in dbm for [ENSG00000285051.2] WARNING, no entry stored in dbm for [ENSG00000206341.7] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000271538.6] WARNING, no entry stored in dbm for [ENSG00000287721.1] WARNING, no entry stored in dbm for [ENSG00000229608.1] WARNING, no entry stored in dbm for [ENSG00000271699.5] WARNING, no entry stored in dbm for [IGH.g@-ext] WARNING, no entry stored in dbm for [ENSG00000261054.1] WARNING, no entry stored in dbm for [ENSG00000257817.2] WARNING, no entry stored in dbm for [ENSG00000232386.9] WARNING, no entry stored in dbm for [ENSG00000205534.6] WARNING, no entry stored in dbm for [ENSG00000214559.3] WARNING, no entry stored in dbm for [ENSG00000228463.10] WARNING, no entry stored in dbm for [ENSG00000287411.1] WARNING, no entry stored in dbm for [ENSG00000276758.1] WARNING, no entry stored in dbm for [ENSG00000270025.2] WARNING, no entry stored in dbm for [ENSG00000243289.1] WARNING, no entry stored in dbm for [ENSG00000257403.2] WARNING, no entry stored in dbm for [ENSG00000189149.12] WARNING, no entry stored in dbm for [ENSG00000287920.1] WARNING, no entry stored in dbm for [ENSG00000228463.10] WARNING, no entry stored in dbm for [ENSG00000267196.1] WARNING, no entry stored in dbm for [IGH-.g@-ext] WARNING, no entry stored in dbm for [ENSG00000249752.1] WARNING, no entry stored in dbm for [ENSG00000286675.1] WARNING, no entry stored in dbm for [ENSG00000204622.11] WARNING, no entry stored in dbm for [ENSG00000235290.1] WARNING, no entry stored in dbm for [ENSG00000233299.1] WARNING, no entry stored in dbm for [ENSG00000176826.15] WARNING, no entry stored in dbm for [ENSG00000281896.1] WARNING, no entry stored in dbm for [ENSG00000223544.1] WARNING, no entry stored in dbm for [ENSG00000254485.5] WARNING, no entry stored in dbm for [ENSG00000236491.1] WARNING, no entry stored in dbm for [ENSG00000223470.3] WARNING, no entry stored in dbm for [ENSG00000250813.1] WARNING, no entry stored in dbm for [ENSG00000225189.1] WARNING, no entry stored in dbm for [ENSG00000225466.1] WARNING, no entry stored in dbm for [ENSG00000275131.3] WARNING, no entry stored in dbm for [ENSG00000233396.8] WARNING, no entry stored in dbm for [ENSG00000178722.13] WARNING, no entry stored in dbm for [ENSG00000233117.4] WARNING, no entry stored in dbm for [ENSG00000231793.5] WARNING, no entry stored in dbm for [ENSG00000211459.2] WARNING, no entry stored in dbm for [ENSG00000260318.1] WARNING, no entry stored in dbm for [ENSG00000233902.1] WARNING, no entry stored in dbm for [ENSG00000237669.1] WARNING, no entry stored in dbm for [ENSG00000203825.4] WARNING, no entry stored in dbm for [ENSG00000272150.5] WARNING, no entry stored in dbm for [ENSG00000268650.3] WARNING, no entry stored in dbm for [ENSG00000215790.8] WARNING, no entry stored in dbm for [ENSG00000225594.1] WARNING, no entry stored in dbm for [ENSG00000198580.7] WARNING, no entry stored in dbm for [ENSG00000256694.1] WARNING, no entry stored in dbm for [ENSG00000219665.8] WARNING, no entry stored in dbm for [ENSG00000234420.7] WARNING, no entry stored in dbm for [ENSG00000285331.2] WARNING, no entry stored in dbm for [ENSG00000227598.1] WARNING, no entry stored in dbm for [ENSG00000285888.1] WARNING, no entry stored in dbm for [ENSG00000271533.1] WARNING, no entry stored in dbm for [ENSG00000228775.8] WARNING, no entry stored in dbm for [ENSG00000272655.2] WARNING, no entry stored in dbm for [ENSG00000276740.1] WARNING, no entry stored in dbm for [ENSG00000249835.2] WARNING, no entry stored in dbm for [ENSG00000275139.1] WARNING, no entry stored in dbm for [ENSG00000257511.1] WARNING, no entry stored in dbm for [ENSG00000278410.1] WARNING, no entry stored in dbm for [ENSG00000285280.2] WARNING, no entry stored in dbm for [ENSG00000259429.5] WARNING, no entry stored in dbm for [ENSG00000286572.1] WARNING, no entry stored in dbm for [ENSG00000281566.3] WARNING, no entry stored in dbm for [ENSG00000212664.5] WARNING, no entry stored in dbm for [ENSG00000214243.3] WARNING, no entry stored in dbm for [ENSG00000240549.2] WARNING, no entry stored in dbm for [ENSG00000234801.3] WARNING, no entry stored in dbm for [ENSG00000226470.1] WARNING, no entry stored in dbm for [ENSG00000226377.2] WARNING, no entry stored in dbm for [ENSG00000259357.2] WARNING, no entry stored in dbm for [ENSG00000233515.2] WARNING, no entry stored in dbm for [ENSG00000280415.1] WARNING, no entry stored in dbm for [ENSG00000225662.2] WARNING, no entry stored in dbm for [ENSG00000226625.1] WARNING, no entry stored in dbm for [ENSG00000214765.8] WARNING, no entry stored in dbm for [ENSG00000158482.10] WARNING, no entry stored in dbm for [ENSG00000158482.10] WARNING, no entry stored in dbm for [ENSG00000276721.1] WARNING, no entry stored in dbm for [ENSG00000158482.10] WARNING, no entry stored in dbm for [ENSG00000257403.2] WARNING, no entry stored in dbm for [ENSG00000224479.6] WARNING, no entry stored in dbm for [ENSG00000209482.1] WARNING, no entry stored in dbm for [ENSG00000227906.8] WARNING, no entry stored in dbm for [ENSG00000261490.1] WARNING, no entry stored in dbm for [ENSG00000264057.1] WARNING, no entry stored in dbm for [ENSG00000268170.2] WARNING, no entry stored in dbm for [ENSG00000227681.5] WARNING, no entry stored in dbm for [ENSG00000281641.3] WARNING, no entry stored in dbm for [ENSG00000265688.2] WARNING, no entry stored in dbm for [ENSG00000230929.5] WARNING, no entry stored in dbm for [ENSG00000242445.1] WARNING, no entry stored in dbm for [ENSG00000248843.1] WARNING, no entry stored in dbm for [ENSG00000236801.1] WARNING, no entry stored in dbm for [ENSG00000244237.1] WARNING, no entry stored in dbm for [ENSG00000250514.1] WARNING, no entry stored in dbm for [ENSG00000225189.1] WARNING, no entry stored in dbm for [ENSG00000225466.1] WARNING, no entry stored in dbm for [ENSG00000214019.2] WARNING, no entry stored in dbm for [ENSG00000248724.6] WARNING, no entry stored in dbm for [ENSG00000235244.4] WARNING, no entry stored in dbm for [ENSG00000258977.2] WARNING, no entry stored in dbm for [ENSG00000117242.7] WARNING, no entry stored in dbm for [ENSG00000244625.7] WARNING, no entry stored in dbm for [ENSG00000177197.7] WARNING, no entry stored in dbm for [ENSG00000244540.2] WARNING, no entry stored in dbm for [ENSG00000268204.1] WARNING, no entry stored in dbm for [ENSG00000228060.3] WARNING, no entry stored in dbm for [ENSG00000183444.10] WARNING, no entry stored in dbm for [ENSG00000205847.6] WARNING, no entry stored in dbm for [ENSG00000287765.1] WARNING, no entry stored in dbm for [ENSG00000267478.1] WARNING, no entry stored in dbm for [ENSG00000226703.1] WARNING, no entry stored in dbm for [ENSG00000248578.1] WARNING, no entry stored in dbm for [ENSG00000274002.1] WARNING, no entry stored in dbm for [ENSG00000242073.2] WARNING, no entry stored in dbm for [ENSG00000228703.1] WARNING, no entry stored in dbm for [ENSG00000272941.1] WARNING, no entry stored in dbm for [ENSG00000227173.1] WARNING, no entry stored in dbm for [ENSG00000224769.1] WARNING, no entry stored in dbm for [ENSG00000288549.1] WARNING, no entry stored in dbm for [ENSG00000180764.13] WARNING, no entry stored in dbm for [ENSG00000284311.1] WARNING, no entry stored in dbm for [ENSG00000203446.2] WARNING, no entry stored in dbm for [ENSG00000264589.4] WARNING, no entry stored in dbm for [ENSG00000100181.22] WARNING, no entry stored in dbm for [ENSG00000284428.1] WARNING, no entry stored in dbm for [ENSG00000254401.2] WARNING, no entry stored in dbm for [ENSG00000232591.2] WARNING, no entry stored in dbm for [ENSG00000224910.2] WARNING, no entry stored in dbm for [ENSG00000212694.8] WARNING, no entry stored in dbm for [ENSG00000215483.11] WARNING, no entry stored in dbm for [ENSG00000231535.7] WARNING, no entry stored in dbm for [ENSG00000241525.4] WARNING, no entry stored in dbm for [ENSG00000237854.3] WARNING, no entry stored in dbm for [ENSG00000229163.2] WARNING, no entry stored in dbm for [ENSG00000269378.1] WARNING, no entry stored in dbm for [ENSG00000227811.3] WARNING, no entry stored in dbm for [ENSG00000273419.1] WARNING, no entry stored in dbm for [ENSG00000240707.3] WARNING, no entry stored in dbm for [ENSG00000235821.1] WARNING, no entry stored in dbm for [ENSG00000258676.5] WARNING, no entry stored in dbm for [ENSG00000277072.5] WARNING, no entry stored in dbm for [ENSG00000214223.4] WARNING, no entry stored in dbm for [ENSG00000206149.10] WARNING, no entry stored in dbm for [ENSG00000261377.5] WARNING, no entry stored in dbm for [ENSG00000259845.1] WARNING, no entry stored in dbm for [ENSG00000285035.1] WARNING, no entry stored in dbm for [ENSG00000260109.1] WARNING, no entry stored in dbm for [ENSG00000253816.3] WARNING, no entry stored in dbm for [ENSG00000224458.3] WARNING, no entry stored in dbm for [ENSG00000253816.3] WARNING, no entry stored in dbm for [ENSG00000244383.2] WARNING, no entry stored in dbm for [ENSG00000227145.2] WARNING, no entry stored in dbm for [ENSG00000215866.8] WARNING, no entry stored in dbm for [ENSG00000238225.1] WARNING, no entry stored in dbm for [ENSG00000272695.2] WARNING, no entry stored in dbm for [ENSG00000224858.5] WARNING, no entry stored in dbm for [ENSG00000180211.5] WARNING, no entry stored in dbm for [ENSG00000226407.1] WARNING, no entry stored in dbm for [ENSG00000237774.3] WARNING, no entry stored in dbm for [ENSG00000233426.3] WARNING, no entry stored in dbm for [ENSG00000259663.2] WARNING, no entry stored in dbm for [ENSG00000233064.2] WARNING, no entry stored in dbm for [ENSG00000248668.3] WARNING, no entry stored in dbm for [ENSG00000247877.7] WARNING, no entry stored in dbm for [ENSG00000256995.8] WARNING, no entry stored in dbm for [ENSG00000223797.6] WARNING, no entry stored in dbm for [ENSG00000180385.8] WARNING, no entry stored in dbm for [ENSG00000271270.7] WARNING, no entry stored in dbm for [ENSG00000229132.2] WARNING, no entry stored in dbm for [ENSG00000238272.1] WARNING, no entry stored in dbm for [ENSG00000229256.1] WARNING, no entry stored in dbm for [ENSG00000234840.2] WARNING, no entry stored in dbm for [ENSG00000260261.2] WARNING, no entry stored in dbm for [ENSG00000227619.3] WARNING, no entry stored in dbm for [ENSG00000271249.1] WARNING, no entry stored in dbm for [ENSG00000264569.1] WARNING, no entry stored in dbm for [ENSG00000287041.1] WARNING, no entry stored in dbm for [ENSG00000235244.4] WARNING, no entry stored in dbm for [ENSG00000228192.8] WARNING, no entry stored in dbm for [ENSG00000285707.1] WARNING, no entry stored in dbm for [ENSG00000196167.10] WARNING, no entry stored in dbm for [ENSG00000283541.1] WARNING, no entry stored in dbm for [ENSG00000235027.1] WARNING, no entry stored in dbm for [ENSG00000227617.9] WARNING, no entry stored in dbm for [ENSG00000246366.6] WARNING, no entry stored in dbm for [ENSG00000227676.4] WARNING, no entry stored in dbm for [ENSG00000268170.2] WARNING, no entry stored in dbm for [ENSG00000240116.3] WARNING, no entry stored in dbm for [ENSG00000213592.4] WARNING, no entry stored in dbm for [ENSG00000236832.1] WARNING, no entry stored in dbm for [ENSG00000262468.6] WARNING, no entry stored in dbm for [ENSG00000285823.1] WARNING, no entry stored in dbm for [ENSG00000224775.2] WARNING, no entry stored in dbm for [ENSG00000238153.1] WARNING, no entry stored in dbm for [ENSG00000255450.1] WARNING, no entry stored in dbm for [ENSG00000250922.1] WARNING, no entry stored in dbm for [ENSG00000228956.8] WARNING, no entry stored in dbm for [ENSG00000269937.1] WARNING, no entry stored in dbm for [ENSG00000267108.1] WARNING, no entry stored in dbm for [ENSG00000233355.7] WARNING, no entry stored in dbm for [ENSG00000251600.8] WARNING, no entry stored in dbm for [ENSG00000178082.6] WARNING, no entry stored in dbm for [ENSG00000288107.1] WARNING, no entry stored in dbm for [ENSG00000270094.1] WARNING, no entry stored in dbm for [ENSG00000287078.1] WARNING, no entry stored in dbm for [ENSG00000224251.6] WARNING, no entry stored in dbm for [ENSG00000285280.2] WARNING, no entry stored in dbm for [ENSG00000286215.1] WARNING, no entry stored in dbm for [ENSG00000227678.8] WARNING, no entry stored in dbm for [ENSG00000286330.1] WARNING, no entry stored in dbm for [ENSG00000285269.2] WARNING, no entry stored in dbm for [ENSG00000267026.5] WARNING, no entry stored in dbm for [ENSG00000244265.2] WARNING, no entry stored in dbm for [ENSG00000258959.2] WARNING, no entry stored in dbm for [ENSG00000234748.1] WARNING, no entry stored in dbm for [ENSG00000213598.4] WARNING, no entry stored in dbm for [ENSG00000263266.2] WARNING, no entry stored in dbm for [ENSG00000274760.1] WARNING, no entry stored in dbm for [ENSG00000279080.1] WARNING, no entry stored in dbm for [ENSG00000249593.6] WARNING, no entry stored in dbm for [ENSG00000226310.1] WARNING, no entry stored in dbm for [ENSG00000226945.1] WARNING, no entry stored in dbm for [ENSG00000273257.2] WARNING, no entry stored in dbm for [ENSG00000258416.1] WARNING, no entry stored in dbm for [ENSG00000224016.2] WARNING, no entry stored in dbm for [ENSG00000279375.1] WARNING, no entry stored in dbm for [ENSG00000259515.1] WARNING, no entry stored in dbm for [ENSG00000279375.1] WARNING, no entry stored in dbm for [ENSG00000280193.1] WARNING, no entry stored in dbm for [ENSG00000279047.4] WARNING, no entry stored in dbm for [ENSG00000259515.1] WARNING, no entry stored in dbm for [ENSG00000279047.4] WARNING, no entry stored in dbm for [ENSG00000280193.1] WARNING, no entry stored in dbm for [ENSG00000272154.5] WARNING, no entry stored in dbm for [ENSG00000280193.1] WARNING, no entry stored in dbm for [ENSG00000274615.1] WARNING, no entry stored in dbm for [ENSG00000159712.10] WARNING, no entry stored in dbm for [ENSG00000242073.2] WARNING, no entry stored in dbm for [ENSG00000275902.1] WARNING, no entry stored in dbm for [ENSG00000280213.1] WARNING, no entry stored in dbm for [ENSG00000260563.3] WARNING, no entry stored in dbm for [ENSG00000285736.1] WARNING, no entry stored in dbm for [ENSG00000219410.6] WARNING, no entry stored in dbm for [ENSG00000225662.2] WARNING, no entry stored in dbm for [ENSG00000240695.1] WARNING, no entry stored in dbm for [ENSG00000242876.3] WARNING, no entry stored in dbm for [ENSG00000284675.1] WARNING, no entry stored in dbm for [ENSG00000224479.6] WARNING, no entry stored in dbm for [ENSG00000176349.11] WARNING, no entry stored in dbm for [ENSG00000235831.7] WARNING, no entry stored in dbm for [ENSG00000282375.1] WARNING, no entry stored in dbm for [ENSG00000287431.1] WARNING, no entry stored in dbm for [ENSG00000284648.1] WARNING, no entry stored in dbm for [ENSG00000284610.1] WARNING, no entry stored in dbm for [ENSG00000249741.2] WARNING, no entry stored in dbm for [ENSG00000246394.7] WARNING, no entry stored in dbm for [ENSG00000226886.1] WARNING, no entry stored in dbm for [ENSG00000164669.13] WARNING, no entry stored in dbm for [ENSG00000248714.7] WARNING, no entry stored in dbm for [ENSG00000285035.1] WARNING, no entry stored in dbm for [ENSG00000265936.1] WARNING, no entry stored in dbm for [ENSG00000214259.3] WARNING, no entry stored in dbm for [ENSG00000261232.2] WARNING, no entry stored in dbm for [ENSG00000259347.7] WARNING, no entry stored in dbm for [ENSG00000266980.1] WARNING, no entry stored in dbm for [ENSG00000239985.2] WARNING, no entry stored in dbm for [ENSG00000279605.1] WARNING, no entry stored in dbm for [ENSG00000259299.1] WARNING, no entry stored in dbm for [ENSG00000257530.1] WARNING, no entry stored in dbm for [ENSG00000188002.10] WARNING, no entry stored in dbm for [ENSG00000276332.1] WARNING, no entry stored in dbm for [ENSG00000261303.6] WARNING, no entry stored in dbm for [ENSG00000223698.3] WARNING, no entry stored in dbm for [ENSG00000261303.6] WARNING, no entry stored in dbm for [ENSG00000241621.1] WARNING, no entry stored in dbm for [ENSG00000260276.2] WARNING, no entry stored in dbm for [ENSG00000272800.3] WARNING, no entry stored in dbm for [ENSG00000231409.3] WARNING, no entry stored in dbm for [ENSG00000242087.2] WARNING, no entry stored in dbm for [ENSG00000233223.3] WARNING, no entry stored in dbm for [ENSG00000237844.2] WARNING, no entry stored in dbm for [ENSG00000286030.2] WARNING, no entry stored in dbm for [ENSG00000186148.13] WARNING, no entry stored in dbm for [ENSG00000240401.9] WARNING, no entry stored in dbm for [ENSG00000268543.1] WARNING, no entry stored in dbm for [ENSG00000272667.1] WARNING, no entry stored in dbm for [ENSG00000267383.7] WARNING, no entry stored in dbm for [ENSG00000255106.1] WARNING, no entry stored in dbm for [ENSG00000241741.1] WARNING, no entry stored in dbm for [ENSG00000268119.6] WARNING, no entry stored in dbm for [ENSG00000282890.1] WARNING, no entry stored in dbm for [ENSG00000068781.21] WARNING, no entry stored in dbm for [ENSG00000250407.1] WARNING, no entry stored in dbm for [ENSG00000269392.1] WARNING, no entry stored in dbm for [ENSG00000260139.6] WARNING, no entry stored in dbm for [ENSG00000280007.1] WARNING, no entry stored in dbm for [ENSG00000279467.1] WARNING, no entry stored in dbm for [ENSG00000277458.1] WARNING, no entry stored in dbm for [ENSG00000158482.10] WARNING, no entry stored in dbm for [ENSG00000277458.1] WARNING, no entry stored in dbm for [ENSG00000189149.12] WARNING, no entry stored in dbm for [ENSG00000277458.1] WARNING, no entry stored in dbm for [ENSG00000189149.12] WARNING, no entry stored in dbm for [ENSG00000237835.1] WARNING, no entry stored in dbm for [ENSG00000258891.1] WARNING, no entry stored in dbm for [ENSG00000224699.9] WARNING, no entry stored in dbm for [ENSG00000205485.13] WARNING, no entry stored in dbm for [ENSG00000254610.3] WARNING, no entry stored in dbm for [ENSG00000284605.1] WARNING, no entry stored in dbm for [ENSG00000235776.2] WARNING, no entry stored in dbm for [ENSG00000242248.2] WARNING, no entry stored in dbm for [ENSG00000279232.2] WARNING, no entry stored in dbm for [ENSG00000245105.4] WARNING, no entry stored in dbm for [ENSG00000267424.1] * STAR-Fusion complete. See output: /tmp/nxf.KVmV9hHFJy/./star-fusion.fusion_predictions.tsv (or .abridged.tsv version)