Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a3/e4f11f1a9d82c307fe4c57718e16b9/1173_H2E_T1_RNA_SLD_01_A23T55JLT4_1.star_alignment.Aligned.sortedByCoord.out.cram
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/b0af0533bd113fded809ebf422601a/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bb/b0af0533bd113fded809ebf422601a/.command.run
==> STAGING COMPLETE (3 inputs)

ls: *.bai: No such file or directory
ls: *.csi: No such file or directory