AIH curated blacklist: matched 12 fusion rows (breakpoint_ID in qualified set)
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ARRIBA FILTERING SUMMARY
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Total fusions: 385
Pass (FILTER=PASS): 63 (16.4%)
Fail (FILTER=FAIL): 322 (83.6%)
AIH curated blacklist (blacklisted flag):
Total blacklisted: 12
All 12 blacklisted rows have FILTER=FAIL
Failure reasons (top 15):
confidence_below_min(low<high);total_reads_below_min(1.0<8.0): 65
confidence_below_min(medium<high): 55
confidence_below_min(medium<high);total_reads_below_min(5.0<8.0): 25
confidence_below_min(medium<high);total_reads_below_min(3.0<8.0): 23
confidence_below_min(medium<high);total_reads_below_min(6.0<8.0): 21
confidence_below_min(low<high): 21
confidence_below_min(low<high);total_reads_below_min(2.0<8.0): 18
confidence_below_min(low<high);total_reads_below_min(3.0<8.0): 16
confidence_below_min(low<high);total_reads_below_min(0.0<8.0): 15
confidence_below_min(low<high);total_reads_below_min(5.0<8.0): 12
confidence_below_min(low<high);total_reads_below_min(4.0<8.0): 10
confidence_below_min(medium<high);total_reads_below_min(4.0<8.0): 10
confidence_below_min(medium<high);aih_curated_blacklist: 5
confidence_below_min(medium<high);total_reads_below_min(2.0<8.0): 4
confidence_below_min(low<high);total_reads_below_min(6.0<8.0): 4
Breakdown by confidence:
high: 63 pass, 6 fail (total: 69)
low: 0 pass, 169 fail (total: 169)
medium: 0 pass, 147 fail (total: 147)
Arriba filter: 385 rows -> 63 PASS; wrote FFPE_HD789_01_RNA_13_A23T55JLT4_1.arriba.fusions.filtered.tsv and FFPE_HD789_01_RNA_13_A23T55JLT4_1.arriba.fusions.filtered_pass_only.tsv
Summary written to: FFPE_HD789_01_RNA_13_A23T55JLT4_1.arriba.fusions.filter_summary.txt