File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/15/8c6933110d29eb631455c8093f16cf/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:45:23
                             Started mapping on |	Jun 08 09:51:43
                                    Finished on |	Jun 08 10:32:12
       Mapping speed, Million of reads per hour |	438.26

                          Number of input reads |	295704359
                      Average input read length |	202
                                    UNIQUE READS:
                   Uniquely mapped reads number |	283080123
                        Uniquely mapped reads % |	95.73%
                          Average mapped length |	201.14
                       Number of splices: Total |	229226313
            Number of splices: Annotated (sjdb) |	226260595
                       Number of splices: GT/AG |	226978705
                       Number of splices: GC/AG |	1218852
                       Number of splices: AT/AC |	129280
               Number of splices: Non-canonical |	899476
                      Mismatch rate per base, % |	0.26%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.92
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.51
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	8674732
             % of reads mapped to multiple loci |	2.93%
        Number of reads mapped to too many loci |	559584
             % of reads mapped to too many loci |	0.19%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	2833566
                 % of reads unmapped: too short |	0.96%
                Number of reads unmapped: other |	556354
                     % of reads unmapped: other |	0.19%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%