[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 194,360
[index] number of k-mers: 112,035,259
[quant] running in paired-end mode
[quant] will process pair 1: 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz
                             1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz
[quant] finding pseudoalignments for the reads ...
[progress] 1M reads processed (98.1% mapped)             
[progress] 2M reads processed (98.1% mapped)             
[progress] 3M reads processed (98.1% mapped)             
[progress] 4M reads processed (98.1% mapped)             
[progress] 5M reads processed (98.1% mapped)             
[progress] 6M reads processed (98.1% mapped)             
[progress] 7M reads processed (98.1% mapped)             
[progress] 8M reads processed (98.1% mapped)             
[progress] 9M reads processed (98.1% mapped)             
[progress] 10M reads processed (98.1% mapped)             
[progress] 11M reads processed (98.1% mapped)              done
[quant] processed 11,357,275 reads, 11,145,767 reads pseudoaligned
[quant] estimated average fragment length: 111.8
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 1,289 rounds