Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/9d987c5c8df046f7f4a619e267e157/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/rna/GRCh38/ensembl/Homo_sapiens.GRCh38.102.gtf Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dd/9d987c5c8df046f7f4a619e267e157/1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/cbd700059645eea2a3c03d9ece103d/.command.sh Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/76/20e95d6a200022f004e69bf9014134/kallisto Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/cbd700059645eea2a3c03d9ece103d/.command.run ==> STAGING COMPLETE (6 inputs) [quant] fragment length distribution will be estimated from the data [index] k-mer length: 31 [index] number of targets: 194,360 [index] number of k-mers: 112,035,259 [quant] running in paired-end mode [quant] will process pair 1: 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1_1.fastp.fastq.gz 1173_CRX_T1_RNA_SLD_01_A23T55JLT4_1_2.fastp.fastq.gz [quant] finding pseudoalignments for the reads ... [progress] 1M reads processed (98.1% mapped) [progress] 2M reads processed (98.1% mapped) [progress] 3M reads processed (98.1% mapped) [progress] 4M reads processed (98.1% mapped) [progress] 5M reads processed (98.1% mapped) [progress] 6M reads processed (98.1% mapped) [progress] 7M reads processed (98.1% mapped) [progress] 8M reads processed (98.1% mapped) [progress] 9M reads processed (98.1% mapped) [progress] 10M reads processed (98.1% mapped) [progress] 11M reads processed (98.1% mapped) done [quant] processed 11,357,275 reads, 11,145,767 reads pseudoaligned [quant] estimated average fragment length: 111.8 [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 1,289 rounds