.command.sh - Workdir - NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/29/5e1704094d2b9d086a8b55b4896493/.command.sh
Size: 373 bytes
Task: NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV (1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

#!/bin/bash -euo pipefail
agat_convert_sp_gff2tsv.pl \
    --gff 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.gtf \
    --output 1173_D6K_T1_RNA_SLD_01_A23T55JLT4_1.tsv \


cat <<-END_VERSIONS > versions.yml
"NFCORE_RNAFUSION:RNAFUSION:FUSIONINSPECTOR_WORKFLOW:AGAT_CONVERTSPGFF2TSV":
    agat: $(agat_convert_sp_gff2tsv.pl --help | sed '3!d; s/.*v//' | sed 's/ .*//')
END_VERSIONS