File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/4355c33b7683209806e20cf4b8e5a7/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 10:39:37
                             Started mapping on |	Jun 08 10:46:22
                                    Finished on |	Jun 08 11:27:45
       Mapping speed, Million of reads per hour |	357.76

                          Number of input reads |	246755598
                      Average input read length |	228
                                    UNIQUE READS:
                   Uniquely mapped reads number |	234480160
                        Uniquely mapped reads % |	95.03%
                          Average mapped length |	227.28
                       Number of splices: Total |	210037806
            Number of splices: Annotated (sjdb) |	207219013
                       Number of splices: GT/AG |	207755924
                       Number of splices: GC/AG |	1304741
                       Number of splices: AT/AC |	164294
               Number of splices: Non-canonical |	812847
                      Mismatch rate per base, % |	0.23%
                         Deletion rate per base |	0.02%
                        Deletion average length |	1.96
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.56
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	7348188
             % of reads mapped to multiple loci |	2.98%
        Number of reads mapped to too many loci |	490629
             % of reads mapped to too many loci |	0.20%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	3918867
                 % of reads unmapped: too short |	1.59%
                Number of reads unmapped: other |	517754
                     % of reads unmapped: other |	0.21%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%