File Info

Filename
fi_workdir/Log.final.out
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/a139fda5b95c0ee9652423e4acf70e/fi_workdir/Log.final.out
Size
2.0 KB
Attempt
                                 Started job on |	Jun 08 09:28:42
                             Started mapping on |	Jun 08 09:35:35
                                    Finished on |	Jun 08 10:10:21
       Mapping speed, Million of reads per hour |	263.86

                          Number of input reads |	152890127
                      Average input read length |	223
                                    UNIQUE READS:
                   Uniquely mapped reads number |	144546816
                        Uniquely mapped reads % |	94.54%
                          Average mapped length |	222.19
                       Number of splices: Total |	133582648
            Number of splices: Annotated (sjdb) |	131447924
                       Number of splices: GT/AG |	131990950
                       Number of splices: GC/AG |	906949
                       Number of splices: AT/AC |	129318
               Number of splices: Non-canonical |	555431
                      Mismatch rate per base, % |	0.28%
                         Deletion rate per base |	0.02%
                        Deletion average length |	2.08
                        Insertion rate per base |	0.00%
                       Insertion average length |	1.76
                             MULTI-MAPPING READS:
        Number of reads mapped to multiple loci |	5696972
             % of reads mapped to multiple loci |	3.73%
        Number of reads mapped to too many loci |	342998
             % of reads mapped to too many loci |	0.22%
                                  UNMAPPED READS:
  Number of reads unmapped: too many mismatches |	0
       % of reads unmapped: too many mismatches |	0.00%
            Number of reads unmapped: too short |	1868529
                 % of reads unmapped: too short |	1.22%
                Number of reads unmapped: other |	434812
                     % of reads unmapped: other |	0.28%
                                  CHIMERIC READS:
                       Number of chimeric reads |	0
                            % of chimeric reads |	0.00%