File Info

Filename
multiqc_general_stats_controls.tsv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/97/bf4e6a1b87fa8191930b4ef8a1a607/multiqc_general_stats_controls.tsv
Size
1.8 KB
Task
NFCORE_RNAFUSION:RNAFUSION:MULTIQC_EXTRACT_CONTROLS (multiqc_data)
Attempt

Content

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sample_id AFTER_FILTERING_Q30_RATE CONTAMINATION_PCT FRAC_ANTISENSE FRAC_UNMAPPED FRAGMENT_LENGTH_MEAN FRAGMENT_LENGTH_MEDIAN IS_CONTAMINATED N_Q30 PERCENT_DUPLICATION PCT_MITO_EST_COUNTS MITOCHONDRIAL_CONTAMINATION SCORE_LOG2TPM1_MEAN_CHRY_SIGNATURE UNIQUE_READS_RSEQC UNIQUELY_MAPPED_PERCENT GC_BIAS PCT_ADAPTER PCT_DUPLICATION PCT_HK_EST_COUNTS PCT_HK_TPM PCT_MALE_EST_COUNTS PCT_MALE_TPM PCT_RIBO_EST_COUNTS RIBOSOMAL_CONTAMINATION PCT_SURVIVING PERCENT_GC READS MAPPED_READS AVG_SEQUENCE_LENGTH PERCENT_DUPLICATES PERCENT_FAILS TOTAL_SEQUENCES FRAC_BASES_GT30X FRAC_READS_OFF_TARGET FRAC_READS_ON_TARGET MEAN_DEPTH Q50_DEPTH FRAC_BASES_GT100X FRAC_PAIRS_OFF_TARGET FRAC_PAIRS_ON_TARGET PAIRS_OFF_TARGET PAIRS_ON_TARGET READS_OFF_TARGET READS_ON_TARGET EXPECTED_DISTINCT FRAC_DUPES UNIQUE_READS TOTAL_READS AFTER_FILTERING_GC_CONTENT AFTER_FILTERING_Q30_BASES FILTERING_RESULT_PASSED_FILTER_READS FRAGMENT_LENGTH MEDIAN_SEQUENCE_LENGTH PERCENT_ALIGNED PROPER_PAIRS_PERCENT PSEUDOALIGNED_READS
FFPE_HD789_01_RNA_13_A23T55JLT4_1 0.971394 62.38 0.9578 0.006076 177.8 161.0 Yes 0.972526 0.413163 0.007 0.013 4.026 569256851.0 95.92 0.0 38.799315 30.0766 0.763 1.093 0.0 0.0 1.708 4.923 98.104228 588625368.0 282313801.0 0.719197 0.043803 0.945886 728.17669 298.0 0.622928 0.021449 0.978551 3643984.0 166249033.0 15195598.0 328132783.0 524299752.0 0.410652 346905145.0 9999000000.0 0.540419 78248290863.0 588625368.0 90.2105383929496
NTC_0001_0001_A23T55JLT4_1 0.889823 N/A 0.4733 0.443213 91.5 100.0 Skipped 0.93599 0.391791 0.0 0.0 0.0 288.0 17.73 0.0 50.77641531056612 29.4408 0.0 0.0 0.0 0.0 0.0 0.0 4.137061654824662 1444.0 128.0 0.0 0.352524 0.080602 0.000138 0.0 0.0 0.8 0.2 188.0 47.0 398.0 91.0 2116.0 0.218144 1129.0 9999000000.0 0.684571 119974.0 1444.0 4.687230742719283
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