File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/e24d1bfe3f0f347c5b2bc07cc8e4f2/.command.log
Size
1.1 KB
Task
NFCORE_RNAFUSION:RNAFUSION:KALLISTO_TO_MULTIQC (1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1)
Attempt

Content

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  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/e24d1bfe3f0f347c5b2bc07cc8e4f2/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/e24d1bfe3f0f347c5b2bc07cc8e4f2/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/16/c77b8857fc4a5736ad5b3de1f30bf5/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f5/1b03d9c624022247f41f0548335c25/1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1.sample_qc.tsv
==> STAGING COMPLETE (4 inputs)

Processing Kallisto file: 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5
Successfully converted 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1/abundance.h5 to 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1_kallisto_mqc.tsv
  Sample: 1173_DSO_T1_RNA_SLD_01_A23T55JLT4_1
  Mean Fragment Length: 108.0 bp
  Median Fragment Length: 101.0 bp
  pct_mito_est_counts: 0.034%
  pct_ribo_est_counts: 1.129%
  pct_hk_est_counts: 0.474%
  pct_male_est_counts: 0.0%
  pct_mito_tpm: 0.069%
  pct_ribo_tpm: 3.294%
  pct_hk_tpm: 0.732%
  pct_male_tpm: 0.0%
  score_log2tpm1_mean_chry_signature: 5.467%